mRNA_D-dichotoma_M_contig1017.231.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1017.231.1
Unique NamemRNA_D-dichotoma_M_contig1017.231.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1017.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1017contigD-dichotoma_M_contig1017:92229..92734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.0638444-CDS-D-dichotoma_M_contig1017:92228..922771622927501.0638444-CDS-D-dichotoma_M_contig1017:92228..92277Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 92229..92277 +
1690798004.1580336-CDS-D-dichotoma_M_contig1017:92228..922771690798004.1580336-CDS-D-dichotoma_M_contig1017:92228..92277Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 92229..92277 +
1622927501.1246746-CDS-D-dichotoma_M_contig1017:92497..927331622927501.1246746-CDS-D-dichotoma_M_contig1017:92497..92733Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 92498..92733 +
1690798004.1702116-CDS-D-dichotoma_M_contig1017:92497..927331690798004.1702116-CDS-D-dichotoma_M_contig1017:92497..92733Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 92498..92733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1017.231.1prot_D-dichotoma_M_contig1017.231.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1017 92229..92733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1017.231.1

>prot_D-dichotoma_M_contig1017.231.1 ID=prot_D-dichotoma_M_contig1017.231.1|Name=mRNA_D-dichotoma_M_contig1017.231.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=95bp
RRPRSADCLPRELRMGGWCRVRGLSAPSYPVRAIYSPPGNNSCVQGNNGG
RGVVDRRILDARHHRFRCRFVGSAAGFLVGGGRATRRPRLQRRWV
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mRNA from alignment at D-dichotoma_M_contig1017:92229..92734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1017.231.1 ID=mRNA_D-dichotoma_M_contig1017.231.1|Name=mRNA_D-dichotoma_M_contig1017.231.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=506bp|location=Sequence derived from alignment at D-dichotoma_M_contig1017:92229..92734+ (Dictyota dichotoma ODC1387m male)
AGACGCCCGCGAAGCGCAGACTGCCTTCCCAGAGAACTACGTATGGGAGG
TGAGTTTGCAACGTGCATCGGGGCCGGAGAGCGGCAAGCTGGATCAGAGT
TGTGTTGTCCCCAGGATGACGGTGTTCCCCCCTCAGTACCTCCGCGACGG
CTCGATATCACGTCCAGGGGGGACGCAGTCACCGCCCACATTTTGCCCCG
TTCGTTACACCGGTGGCTTTCCCCCGCCCGGTTCCTCCGACCACCCTCTC
TTCCGCATGTCCTCGGCAGGTTGGTGCCGGGTTCGAGGCCTCTCTGCTCC
GAGTTATCCCGTACGAGCGATATATTCCCCTCCGGGTAACAACTCCTGCG
TCCAAGGCAACAACGGCGGACGCGGCGTCGTCGATCGACGGATCCTCGAT
GCACGGCACCATCGTTTCCGTTGCCGATTCGTCGGATCAGCGGCTGGCTT
CCTCGTGGGCGGCGGCCGGGCGACGCGGCGGCCGCGGCTGCAGCGGCGGT
GGGTGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1017:92229..92734+

>mRNA_D-dichotoma_M_contig1017.231.1 ID=mRNA_D-dichotoma_M_contig1017.231.1|Name=mRNA_D-dichotoma_M_contig1017.231.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=570bp|location=Sequence derived from alignment at D-dichotoma_M_contig1017:92229..92734+ (Dictyota dichotoma ODC1387m male)
AGACGCCCGCGAAGCGCAGACTGCCTTCCCAGAGAACTACGTATGGGAGA
GACGCCCGCGAAGCGCAGACTGCCTTCCCAGAGAACTACGTATGGGAGGT
TGGTGCCGGGTTCGAGGCCTCTCTGCTCCGAGTTATCCCGTACGAGCGAT
ATATTCCCCTCCGGGTAACAACTCCTGCGTCCAAGGCAACAACGGCGGAC
GCGGCGTCGTCGATCGACGGATCCTCGATGCACGGCACCATCGTTTCCGT
TGCCGATTCGTCGGATCAGCGGCTGGCTTCCTCGTGGGCGGCGGCCGGGC
GACGCGGCGGCCGCGGCTGCAGCGGCGGTGGGTGGTTGGTGCCGGGTTCG
AGGCCTCTCTGCTCCGAGTTATCCCGTACGAGCGATATATTCCCCTCCGG
GTAACAACTCCTGCGTCCAAGGCAACAACGGCGGACGCGGCGTCGTCGAT
CGACGGATCCTCGATGCACGGCACCATCGTTTCCGTTGCCGATTCGTCGG
ATCAGCGGCTGGCTTCCTCGTGGGCGGCGGCCGGGCGACGCGGCGGCCGC
GGCTGCAGCGGCGGTGGGTG
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