mRNA_D-dichotoma_M_contig1016.228.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1016.228.1 vs. uniprot
Match: A0A6H5KJE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE3_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.620e-26 Identity = 198/412 (48.06%), Postives = 238/412 (57.77%), Query Frame = 1
Query: 1504 RSGSIASAERAVAAAQKGELRIMETFLAGGGDVETRDSKLGMTLLGWAAREGQEEMARLLLIKGANMKAGDASMSTPLHRACSGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXXXKTIIGNTPLHLSCDRGFVGNVKLLLEWGANPLVVNEAGKLPVDVPAPWVADSVKATLRELLSKPQVIGGDGFYDDEHPRPT--TFRPRPYGAAEADAELMATLRAERAAQKEDPNEIEMSTRSTPDGERSSSLAKPGPLKTSKEPTQGPSVLSNSSVRTLRRLASGSSAHRSRSKPGEGGLPGANRVSTTSSDISFKVDA---PSIG----------GMGKLRKMQSANLEKSRNRGSCCVVQ 2694
++ ++ +RA+ AAQ G+L M+ FL GGGD+E RDS GMTLL WA+R G E+ARLLL +GA+ A D TPLHRACSG + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXX KT+ GN +V APWV DSVKA+++ELL+ +G H RPT RPRP GAAE +A LM +R++R + E P R T S+S P + ++ + S S V+ SAHR+R++PG+GGLPG D F+ A +G GMGK RK Q + KS+ G CC VQ
Sbjct: 452 KASFLSDEDRAIEAAQGGDLAAMKAFLDGGGDIELRDSLGGMTLLAWASRRGHTELARLLLSRGASATARDGRDRTPLHRACSGCNPDVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVAAPWVEDSVKASMQELLAPRSQPSEEGSDCTSHTRPTPAVVRPRPKGAAEEEAGLMEFIRSQRNSVAECPECQRDMLRQT---HASNSNGVPIGVSSAHGTYRISSSRSPGKVKMC-------SAHRARAQPGKGGLPGL--------DDGFQRGALGDAMLGEGMSEFRPRKGMGKSRKKQLS--AKSKYEGGCCSVQ 843
BLAST of mRNA_D-dichotoma_M_contig1016.228.1 vs. uniprot
Match: D7FUD5_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD5_ECTSI) HSP 1 Score: 127 bits (319), Expect = 2.600e-26 Identity = 194/412 (47.09%), Postives = 237/412 (57.52%), Query Frame = 1
Query: 1504 RSGSIASAERAVAAAQKGELRIMETFLAGGGDVETRDSKLGMTLLGWAAREGQEEMARLLLIKGANMKAGDASMSTPLHRACSGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXXXKTIIGNTPLHLSCDRGFVGNVKLLLEWGANPLVVNEAGKLPVDVPAPWVADSVKATLRELLSKPQVIGGDGFYDDEHPRPT--TFRPRPYGAAEADAELMATLRAERAAQKEDPNEIEMSTRSTPDGERSSSLAKPGPLKTSKEPTQGPSVLSNSSVRTLRRLASGS-------SAHRSRSKPGEGGLPGANR------VSTTSSDISFKVDAPSIGGMGKLRKMQSANLEKSRNRGSCCVVQ 2694
++ ++ +RA+ AAQ G+L ++ FL GGD+E RDS GMTLL WA+R G E+ARLLL +GA+ A D TPLHRACSG + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXX KT+ GN +V APWV DSVKA+++ELL+ + +G H RPT RPRP GAAE +A LM +R++R + E P + R T + G + +S+ T R ++GS SAHR+R++PGEGGLPG + + P G MGK RK Q ++ KS+ G CC VQ
Sbjct: 280 KASFLSDEDRAIEAAQGGDLAAIKAFLDRGGDIELRDSLGGMTLLAWASRRGHTELARLLLSRGASATARDGRDRTPLHRACSGCNPDVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVAAPWVEDSVKASMQELLAPRRQPSKEGSDATSHTRPTPAVVRPRPKGAAEEEAGLMEFIRSQRNSMAECPECQQDMLRQTHAFN-----------------SDGVPIGLSSAHGTYRISSAGSPGKVKMCSAHRARAQPGEGGLPGLDEGFQRGLLGDAMLGEGMSEFRPRKG-MGKSRKKQLSS--KSKYEGGCCSVQ 671 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1016.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1016.228.1 >prot_D-dichotoma_M_contig1016.228.1 ID=prot_D-dichotoma_M_contig1016.228.1|Name=mRNA_D-dichotoma_M_contig1016.228.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=812bp MTHPEAAREAAEDGQDGGETEETATVAVGNTSSASDNYMVETKGWSGQGNback to top mRNA from alignment at D-dichotoma_M_contig1016:203178..233350+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1016.228.1 ID=mRNA_D-dichotoma_M_contig1016.228.1|Name=mRNA_D-dichotoma_M_contig1016.228.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=30173bp|location=Sequence derived from alignment at D-dichotoma_M_contig1016:203178..233350+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1016:203178..233350+ >mRNA_D-dichotoma_M_contig1016.228.1 ID=mRNA_D-dichotoma_M_contig1016.228.1|Name=mRNA_D-dichotoma_M_contig1016.228.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=4872bp|location=Sequence derived from alignment at D-dichotoma_M_contig1016:203178..233350+ (Dictyota dichotoma ODC1387m male)back to top |