mRNA_D-dichotoma_M_contig1016.226.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1016.226.1
Unique NamemRNA_D-dichotoma_M_contig1016.226.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1016.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1016contigD-dichotoma_M_contig1016:61902..62294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.8888175-CDS-D-dichotoma_M_contig1016:61901..622161622927499.8888175-CDS-D-dichotoma_M_contig1016:61901..62216Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1016 61902..62216 +
1690798003.4296198-CDS-D-dichotoma_M_contig1016:61901..622161690798003.4296198-CDS-D-dichotoma_M_contig1016:61901..62216Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1016 61902..62216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.9018767-UTR-D-dichotoma_M_contig1016:62216..622941622927499.9018767-UTR-D-dichotoma_M_contig1016:62216..62294Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1016 62217..62294 +
1690798003.4377084-UTR-D-dichotoma_M_contig1016:62216..622941690798003.4377084-UTR-D-dichotoma_M_contig1016:62216..62294Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1016 62217..62294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1016.226.1prot_D-dichotoma_M_contig1016.226.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1016 61902..62216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1016.226.1

>prot_D-dichotoma_M_contig1016.226.1 ID=prot_D-dichotoma_M_contig1016.226.1|Name=mRNA_D-dichotoma_M_contig1016.226.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=105bp
VGGGLNVYYTIQCKHYPVVENGLLLQITTYYSIALNGVSIHLRDGNGRST
DIALTGELLRSIKDKRSCCDRPRGTRDPQIERWIEDKTGSGKDPRSAKYG
WKWA*
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mRNA from alignment at D-dichotoma_M_contig1016:61902..62294+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1016.226.1 ID=mRNA_D-dichotoma_M_contig1016.226.1|Name=mRNA_D-dichotoma_M_contig1016.226.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=393bp|location=Sequence derived from alignment at D-dichotoma_M_contig1016:61902..62294+ (Dictyota dichotoma ODC1387m male)
GTGGGCGGGGGCCTCAACGTTTACTACACCATTCAGTGCAAGCATTATCC
CGTCGTAGAAAACGGACTTCTCTTACAAATTACGACCTACTACAGTATAG
CACTGAATGGAGTCTCCATCCATCTGAGGGACGGTAACGGCCGGAGCACC
GACATTGCACTGACGGGTGAGCTCCTGCGATCGATCAAGGACAAGCGGAG
CTGCTGCGACAGACCCCGAGGCACGCGCGACCCGCAGATAGAGCGGTGGA
TCGAAGACAAAACTGGAAGCGGAAAAGACCCGCGTAGCGCAAAATATGGC
TGGAAATGGGCGTAGAAAGAGCATAGATACAGCGAGCCGGGGACAGAGCA
CGAGTAGCTGCTGGAGGTCTTCACGGACTCCGGGCGCGGACCT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1016:61902..62294+

>mRNA_D-dichotoma_M_contig1016.226.1 ID=mRNA_D-dichotoma_M_contig1016.226.1|Name=mRNA_D-dichotoma_M_contig1016.226.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=630bp|location=Sequence derived from alignment at D-dichotoma_M_contig1016:61902..62294+ (Dictyota dichotoma ODC1387m male)
GTGGGCGGGGGCCTCAACGTTTACTACACCATTCAGTGCAAGCATTATCC
CGTCGTAGAAAACGGACTTCTCTTACAAATTACGACCTACTACAGTATAG
CACTGAATGGAGTCTCCATCCATCTGAGGGACGGTAACGGCCGGAGCACC
GACATTGCACTGACGGGTGAGCTCCTGCGATCGATCAAGGACAAGCGGAG
CTGCTGCGACAGACCCCGAGGCACGCGCGACCCGCAGATAGAGCGGTGGA
TCGAAGACAAAACTGGAAGCGGAAAAGACCCGCGTAGCGCAAAATATGGC
TGGAAATGGGCGTAGGTGGGCGGGGGCCTCAACGTTTACTACACCATTCA
GTGCAAGCATTATCCCGTCGTAGAAAACGGACTTCTCTTACAAATTACGA
CCTACTACAGTATAGCACTGAATGGAGTCTCCATCCATCTGAGGGACGGT
AACGGCCGGAGCACCGACATTGCACTGACGGGTGAGCTCCTGCGATCGAT
CAAGGACAAGCGGAGCTGCTGCGACAGACCCCGAGGCACGCGCGACCCGC
AGATAGAGCGGTGGATCGAAGACAAAACTGGAAGCGGAAAAGACCCGCGT
AGCGCAAAATATGGCTGGAAATGGGCGTAG
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