mRNA_D-dichotoma_M_contig1016.223.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1016.223.1
Unique NamemRNA_D-dichotoma_M_contig1016.223.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: A0A0A1WFC7_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WFC7_ZEUCU)

HSP 1 Score: 72.0 bits (175), Expect = 7.220e-13
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLI 240
            ++ QP  FQ+     D   V +L +SLYGL  S + WN  +++ L+EMG++A  SEPC+Y + QG +  ++ +YVDD +I
Sbjct:  808 YMRQPEMFQQ-----DNDCVLKLKKSLYGLKQSGRVWNSRLDEVLKEMGFSACNSEPCLYTKNQGRKLNIIAVYVDDLMI 882          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.460e-12
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLI 240
            ++ Q  G++ T + T  P V +L +SLYGL  S + +     + ++E+G+ A  S+PC+Y  G G  YA+L +YVDDC +
Sbjct:  118 YVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTL 197          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.700e-12
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLI 240
            ++ Q  G++ T + T  P V +L +SLYGL  S + +     + ++E+G+ A  S+PC+Y  G G  YA+L +YVDDC +
Sbjct: 1014 YVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTL 1093          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: UPI000901B00D (uncharacterized protein LOC109158510 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901B00D)

HSP 1 Score: 68.9 bits (167), Expect = 7.690e-12
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   13 PPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLITS 246
            PPGFQ T K+     V RL RSLYGL  +++ WN  ++ AL   G+  + S+P ++ +GQG Q+ ++++YVDD L+TS
Sbjct:    4 PPGFQ-TKKQGQ---VCRLLRSLYGLKQASRQWNSRLSNALMSKGFEQSKSDPSLFIKGQGMQFIVILVYVDDILVTS 77          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: O61636_9DIPT (Reverse transcriptase (Fragment) n=3 Tax=Cellia TaxID=44534 RepID=O61636_9DIPT)

HSP 1 Score: 63.5 bits (153), Expect = 1.410e-11
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLV 216
            F+ QP GF+E     +K  V RL RSLYGL  +++AWN   +  +  +G+  + S+PC+Y +G G  Y +LV
Sbjct:    9 FMTQPEGFEE-----NKNLVCRLKRSLYGLKQASRAWNTRFHVFVERLGFTRSLSDPCLYVKGSGSSYVILV 75          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: A0A409X4K8_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X4K8_9AGAR)

HSP 1 Score: 68.2 bits (165), Expect = 1.620e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLIT 243
            +LEQP G+   +K   K YV+RL +SLYGL   A+ W   + +AL E+G+    ++  ++ + +GE   +LV++VDDCL+T
Sbjct:  506 YLEQPKGY---AKADPKVYVFRLEKSLYGLKQGARNWYAALRKALEELGFKRMEADHGVFVKNEGECLLILVVHVDDCLLT 583          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: Q2Z1I8_MUSAC (Reverse transcriptase (Fragment) n=2 Tax=Musa acuminata TaxID=4641 RepID=Q2Z1I8_MUSAC)

HSP 1 Score: 63.5 bits (153), Expect = 2.060e-11
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCL 237
            ++EQP GF+   K+    +V +L +SLYGL  + + W    +  + E G+  TAS+ C+Y +  GE + +L+LYVDD L
Sbjct:   13 YMEQPEGFKVKGKDN---FVCKLKKSLYGLKQAPRQWYRKFDSFMTENGYKRTASDHCVYIKWFGEDFIILLLYVDDML 88          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: UPI001A452E0F (uncharacterized protein n=3 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A452E0F)

HSP 1 Score: 66.2 bits (160), Expect = 7.340e-11
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   58 VWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLI 240
            V+++ + LYGL  S + WN   N++LR MG+      PCIY +GQGE  A++V+YVDD L+
Sbjct:   27 VYKVVKGLYGLKQSGREWNQEFNRSLRCMGFFQVECAPCIYTKGQGEDMAIVVIYVDDTLV 87          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: UPI0008706EB1 (uncharacterized protein LOC108866135 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI0008706EB1)

HSP 1 Score: 65.5 bits (158), Expect = 7.430e-11
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    4 LEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLITS 246
            ++QP GF + S  T   YVW+L +SL GL  + +AWN      L  +G+ A+AS+  ++ +  G    +L+LYVDD ++TS
Sbjct:    1 MKQPQGFVDVSHLT---YVWKLVKSLCGLKQAPRAWNSKFTAYLGALGFCASASDTSLFVKQDGSDIIILLLYVDDIIVTS 78          
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Match: A0A067T6Q3_GALM3 (Uncharacterized protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T6Q3_GALM3)

HSP 1 Score: 66.2 bits (160), Expect = 7.810e-11
Identity = 30/82 (36.59%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGWAATASEPCIYQRGQGEQYALLVLYVDDCLITS 246
            +++QPPG+++ +     P V  L RSLYGL  +   WN  +N+AL E+G+    ++ C Y R  G++Y +L+++VDD +  S
Sbjct:  987 YMQQPPGYEDGT-----PRVCILIRSLYGLKQAGNIWNRELNRALAEIGFTQLKTDYCCYIRRNGDEYTILLIWVDDFISAS 1063          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1016.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A1WFC7_ZEUCU7.220e-1340.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JVC8_9PHAE1.460e-1237.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE4.700e-1237.50Integrase catalytic domain-containing protein n=1 ... [more]
UPI000901B00D7.690e-1243.59uncharacterized protein LOC109158510 n=1 Tax=Ipomo... [more]
O61636_9DIPT1.410e-1140.28Reverse transcriptase (Fragment) n=3 Tax=Cellia Ta... [more]
A0A409X4K8_9AGAR1.620e-1139.51Integrase catalytic domain-containing protein (Fra... [more]
Q2Z1I8_MUSAC2.060e-1137.97Reverse transcriptase (Fragment) n=2 Tax=Musa acum... [more]
UPI001A452E0F7.340e-1145.90uncharacterized protein n=3 Tax=Ustilago hordei Ta... [more]
UPI0008706EB17.430e-1138.27uncharacterized protein LOC108866135 n=1 Tax=Pyrus... [more]
A0A067T6Q3_GALM37.810e-1136.59Uncharacterized protein (Fragment) n=1 Tax=Galerin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1016contigD-dichotoma_M_contig1016:7898..8143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.3
Seed ortholog evalue7.6e-12
Seed eggNOG ortholog28377.ENSACAP00000022210
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3E4E9@33213,48KK2@7711,49MPT@7742,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.9543426-CDS-D-dichotoma_M_contig1016:7897..81431622927499.9543426-CDS-D-dichotoma_M_contig1016:7897..8143Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1016 7898..8143 +
1690798003.4465852-CDS-D-dichotoma_M_contig1016:7897..81431690798003.4465852-CDS-D-dichotoma_M_contig1016:7897..8143Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1016 7898..8143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1016.223.1prot_D-dichotoma_M_contig1016.223.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1016 7898..8143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1016.223.1

>prot_D-dichotoma_M_contig1016.223.1 ID=prot_D-dichotoma_M_contig1016.223.1|Name=mRNA_D-dichotoma_M_contig1016.223.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=82bp
FLEQPPGFQETSKETDKPYVWRLARSLYGLATSAKAWNPTVNQALREMGW
AATASEPCIYQRGQGEQYALLVLYVDDCLITS
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mRNA from alignment at D-dichotoma_M_contig1016:7898..8143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1016.223.1 ID=mRNA_D-dichotoma_M_contig1016.223.1|Name=mRNA_D-dichotoma_M_contig1016.223.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=246bp|location=Sequence derived from alignment at D-dichotoma_M_contig1016:7898..8143+ (Dictyota dichotoma ODC1387m male)
TTTCTTGAACAACCACCTGGATTCCAAGAGACGAGCAAGGAGACCGACAA GCCATACGTATGGAGACTAGCAAGATCGTTGTATGGACTCGCCACGAGCG CAAAGGCATGGAATCCAACCGTCAATCAAGCACTGAGGGAGATGGGATGG GCAGCAACAGCTTCCGAACCATGTATCTATCAACGAGGACAAGGAGAGCA ATATGCCTTACTTGTTCTCTATGTAGATGACTGTCTCATCACGAGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1016:7898..8143+

>mRNA_D-dichotoma_M_contig1016.223.1 ID=mRNA_D-dichotoma_M_contig1016.223.1|Name=mRNA_D-dichotoma_M_contig1016.223.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=492bp|location=Sequence derived from alignment at D-dichotoma_M_contig1016:7898..8143+ (Dictyota dichotoma ODC1387m male)
TTTCTTGAACAACCACCTGGATTCCAAGAGACGAGCAAGGAGACCGACAA
GCCATACGTATGGAGACTAGCAAGATCGTTGTATGGACTCGCCACGAGCG
CAAAGGCATGGAATCCAACCGTCAATCAAGCACTGAGGGAGATGGGATGG
GCAGCAACAGCTTCCGAACCATGTATCTATCAACGAGGACAAGGAGAGCA
ATATGCCTTACTTGTTCTCTATGTAGATGACTGTCTCATCACGAGCTTTC
TTGAACAACCACCTGGATTCCAAGAGACGAGCAAGGAGACCGACAAGCCA
TACGTATGGAGACTAGCAAGATCGTTGTATGGACTCGCCACGAGCGCAAA
GGCATGGAATCCAACCGTCAATCAAGCACTGAGGGAGATGGGATGGGCAG
CAACAGCTTCCGAACCATGTATCTATCAACGAGGACAAGGAGAGCAATAT
GCCTTACTTGTTCTCTATGTAGATGACTGTCTCATCACGAGC
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