mRNA_D-dichotoma_M_contig1015.221.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1015.221.1
Unique NamemRNA_D-dichotoma_M_contig1015.221.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1015.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1015contigD-dichotoma_M_contig1015:175456..175809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.7936854-CDS-D-dichotoma_M_contig1015:175455..1758091622927498.7936854-CDS-D-dichotoma_M_contig1015:175455..175809Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1015 175456..175809 +
1690798002.8442144-CDS-D-dichotoma_M_contig1015:175455..1758091690798002.8442144-CDS-D-dichotoma_M_contig1015:175455..175809Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1015 175456..175809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1015.221.1prot_D-dichotoma_M_contig1015.221.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1015 175456..175809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1015.221.1

>prot_D-dichotoma_M_contig1015.221.1 ID=prot_D-dichotoma_M_contig1015.221.1|Name=mRNA_D-dichotoma_M_contig1015.221.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=118bp
MVLREDARPPTYGERYSENASRQFYMQYLEYKKRVAHANAGGAVQRQMVT
MSELIPSHVQRVFARLRNGTKTISTQQLSEAVKSHAGHEAGADVELSAAS
AAVAKAVAMNSSGKTLLE
back to top

mRNA from alignment at D-dichotoma_M_contig1015:175456..175809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1015.221.1 ID=mRNA_D-dichotoma_M_contig1015.221.1|Name=mRNA_D-dichotoma_M_contig1015.221.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=354bp|location=Sequence derived from alignment at D-dichotoma_M_contig1015:175456..175809+ (Dictyota dichotoma ODC1387m male)
ATGGTTCTGCGAGAAGATGCACGACCTCCCACGTATGGGGAAAGGTACTC
CGAGAATGCGTCTAGACAGTTCTACATGCAATATCTGGAGTACAAGAAGC
GTGTGGCACACGCAAATGCAGGAGGCGCTGTACAGCGCCAGATGGTGACG
ATGTCGGAACTCATCCCTAGCCATGTGCAGCGAGTTTTCGCTCGTCTCCG
CAATGGCACAAAGACCATTAGTACGCAGCAATTATCTGAGGCTGTGAAGA
GTCATGCTGGGCATGAGGCGGGCGCAGATGTGGAGTTATCTGCAGCGTCC
GCGGCCGTGGCGAAAGCTGTCGCCATGAATTCGAGTGGGAAGACGTTGTT
GGAG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1015:175456..175809+

>mRNA_D-dichotoma_M_contig1015.221.1 ID=mRNA_D-dichotoma_M_contig1015.221.1|Name=mRNA_D-dichotoma_M_contig1015.221.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=708bp|location=Sequence derived from alignment at D-dichotoma_M_contig1015:175456..175809+ (Dictyota dichotoma ODC1387m male)
ATGGTTCTGCGAGAAGATGCACGACCTCCCACGTATGGGGAAAGGTACTC
CGAGAATGCGTCTAGACAGTTCTACATGCAATATCTGGAGTACAAGAAGC
GTGTGGCACACGCAAATGCAGGAGGCGCTGTACAGCGCCAGATGGTGACG
ATGTCGGAACTCATCCCTAGCCATGTGCAGCGAGTTTTCGCTCGTCTCCG
CAATGGCACAAAGACCATTAGTACGCAGCAATTATCTGAGGCTGTGAAGA
GTCATGCTGGGCATGAGGCGGGCGCAGATGTGGAGTTATCTGCAGCGTCC
GCGGCCGTGGCGAAAGCTGTCGCCATGAATTCGAGTGGGAAGACGTTGTT
GGAGATGGTTCTGCGAGAAGATGCACGACCTCCCACGTATGGGGAAAGGT
ACTCCGAGAATGCGTCTAGACAGTTCTACATGCAATATCTGGAGTACAAG
AAGCGTGTGGCACACGCAAATGCAGGAGGCGCTGTACAGCGCCAGATGGT
GACGATGTCGGAACTCATCCCTAGCCATGTGCAGCGAGTTTTCGCTCGTC
TCCGCAATGGCACAAAGACCATTAGTACGCAGCAATTATCTGAGGCTGTG
AAGAGTCATGCTGGGCATGAGGCGGGCGCAGATGTGGAGTTATCTGCAGC
GTCCGCGGCCGTGGCGAAAGCTGTCGCCATGAATTCGAGTGGGAAGACGT
TGTTGGAG
back to top