mRNA_D-dichotoma_M_contig1015.220.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1015.220.1
Unique NamemRNA_D-dichotoma_M_contig1015.220.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.130e-29
Identity = 61/105 (58.10%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  107 SANSNAESVGTNMRRPAIIERELRRYLTEDIRPEEDGFSLVQFWLRRSKPNTCTETGDVEAGLPHVALIARLHDAVESPSCQAERNFSALSNLVGDYAARWYPAR 421
            SA   A +  +  RR AI+ERELR YL ED   EE  FSL++FW RRSKP TC ETG+VE GLPH+ALIARL   +ES SCQAERNFSAL+ L+G   +   P +
Sbjct:  349 SAGRAAPAAVSTARRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGK 453
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BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.140e-29
Identity = 61/105 (58.10%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  107 SANSNAESVGTNMRRPAIIERELRRYLTEDIRPEEDGFSLVQFWLRRSKPNTCTETGDVEAGLPHVALIARLHDAVESPSCQAERNFSALSNLVGDYAARWYPAR 421
            SA   A +  +  RR AI+ERELR YL ED   EE  FSL++FW RRSKP TC ETG+VE GLPH+ALIARL   +ES SCQAERNFSAL+ L+G   +   P +
Sbjct:  677 SAGRAAPAAVSTARRGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGK 781
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BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.470e-17
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2 
Query:   92 AKSRDSANSNAESVGTNMRRPAIIERELRRYLTEDIRPEEDGFSLVQFWLRRSKPNTCTETGDVE--AGLPHVALIARLHDAVESPSCQAERNFSALSNLVG 391
            A S   A+ + ++ G+   R  +IERE+  YL E  + E D F+++ FW RR   + C+ TG+V   A +P++A IARL   +E+ SCQAERNFSALS+L+G
Sbjct:  104 AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIG 205
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BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.530e-17
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 2 
Query:  125 ESVGTNMRRPAIIERELRRYLTEDIRPEEDGFSLVQFWLRRSKPNTCTETGDVE--AGLPHVALIARLHDAVESPSCQAERNFSALSNLVGDY 397
            ++ GT  R   +IERE+  YL E  + + D F+L+ FW RR   +    TG V   A +P++A IARLH  +E+ SCQAERNFSAL++L+GD+
Sbjct:  112 QAAGTGRR--VLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDF 202
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BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.070e-16
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2 
Query:   92 AKSRDSANSNAESVGTNMRRPAIIERELRRYLTEDIRPEEDGFSLVQFWLRRSKPNTCTETGDVE--AGLPHVALIARLHDAVESPSCQAERNFSALSNLVG 391
            A S   A+ + ++ G+   R  +IERE+  YL E  + E D F+++ FW RR   + C+ TG+V   A +P++A IARL   +E+ SCQAERNFSALS+L+G
Sbjct:  669 AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIG 770
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BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.960e-5
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:  239 LRRSKPNTCTETGDVE--AGLPHVALIARLHDAVESPSCQAERNFSALSNLVGDYAARWYPARW 424
            L R   +    TG V   A +P++A IARL+  +E+ SCQAERNFSA S+L+G    +  P+++
Sbjct:  324 LERGTSSVSPTTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKF 387
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1015.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE2.130e-2958.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE5.140e-2958.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJT6_9PHAE5.470e-1744.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE6.530e-1746.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE3.070e-1644.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.960e-542.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1015contigD-dichotoma_M_contig1015:168696..169149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size291
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.63589-UTR-D-dichotoma_M_contig1015:168695..1688371622927499.63589-UTR-D-dichotoma_M_contig1015:168695..168837Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1015 168696..168837 +
1690798003.296841-UTR-D-dichotoma_M_contig1015:168695..1688371690798003.296841-UTR-D-dichotoma_M_contig1015:168695..168837Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1015 168696..168837 +
1622927499.6608167-UTR-D-dichotoma_M_contig1015:169128..1691491622927499.6608167-UTR-D-dichotoma_M_contig1015:169128..169149Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1015 169129..169149 +
1690798003.321572-UTR-D-dichotoma_M_contig1015:169128..1691491690798003.321572-UTR-D-dichotoma_M_contig1015:169128..169149Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1015 169129..169149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.6478279-CDS-D-dichotoma_M_contig1015:168837..1691281622927499.6478279-CDS-D-dichotoma_M_contig1015:168837..169128Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1015 168838..169128 +
1690798003.3114035-CDS-D-dichotoma_M_contig1015:168837..1691281690798003.3114035-CDS-D-dichotoma_M_contig1015:168837..169128Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1015 168838..169128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1015.220.1prot_D-dichotoma_M_contig1015.220.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1015 168838..169128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1015.220.1

>prot_D-dichotoma_M_contig1015.220.1 ID=prot_D-dichotoma_M_contig1015.220.1|Name=mRNA_D-dichotoma_M_contig1015.220.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=97bp
MRRPAIIERELRRYLTEDIRPEEDGFSLVQFWLRRSKPNTCTETGDVEAG
LPHVALIARLHDAVESPSCQAERNFSALSNLVGDYAARWYPARWRN*
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mRNA from alignment at D-dichotoma_M_contig1015:168696..169149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1015.220.1 ID=mRNA_D-dichotoma_M_contig1015.220.1|Name=mRNA_D-dichotoma_M_contig1015.220.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=454bp|location=Sequence derived from alignment at D-dichotoma_M_contig1015:168696..169149+ (Dictyota dichotoma ODC1387m male)
GGCTTCCTCAGCTGGTGAGGCCATGGGCAGCGGAAGTGGCGATGGCGGCG
GATCCACCTAATCTGCATATAACAAGTGAAAGACCACTTCCGCCAAGTCC
AGGGACTCTGCTAACAGCAATGCGGAGTCTGTGGGGACTAACATGCGGCG
ACCCGCAATCATTGAACGGGAGTTGCGAAGGTACTTGACGGAAGACATTC
GTCCGGAGGAGGATGGTTTCTCACTTGTGCAATTCTGGCTGCGACGGAGC
AAGCCCAACACGTGCACTGAGACAGGCGATGTCGAAGCGGGTCTGCCACA
TGTGGCACTTATTGCCCGGCTTCACGACGCGGTTGAATCCCCGAGCTGCC
AGGCGGAGAGGAACTTTTCAGCTCTCTCCAATCTTGTGGGCGACTACGCA
GCACGATGGTATCCGGCAAGGTGGAGAAACTGATGCTCCTTCGACTCAAC
AGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1015:168696..169149+

>mRNA_D-dichotoma_M_contig1015.220.1 ID=mRNA_D-dichotoma_M_contig1015.220.1|Name=mRNA_D-dichotoma_M_contig1015.220.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=582bp|location=Sequence derived from alignment at D-dichotoma_M_contig1015:168696..169149+ (Dictyota dichotoma ODC1387m male)
ATGCGGCGACCCGCAATCATTGAACGGGAGTTGCGAAGGTACTTGACGGA
AGACATTCGTCCGGAGGAGGATGGTTTCTCACTTGTGCAATTCTGGCTGC
GACGGAGCAAGCCCAACACGTGCACTGAGACAGGCGATGTCGAAGCGGGT
CTGCCACATGTGGCACTTATTGCCCGGCTTCACGACGCGGTTGAATCCCC
GAGCTGCCAGGCGGAGAGGAACTTTTCAGCTCTCTCCAATCTTGTGGGCG
ACTACGCAGCACGATGGTATCCGGCAAGGTGGAGAAACTGAATGCGGCGA
CCCGCAATCATTGAACGGGAGTTGCGAAGGTACTTGACGGAAGACATTCG
TCCGGAGGAGGATGGTTTCTCACTTGTGCAATTCTGGCTGCGACGGAGCA
AGCCCAACACGTGCACTGAGACAGGCGATGTCGAAGCGGGTCTGCCACAT
GTGGCACTTATTGCCCGGCTTCACGACGCGGTTGAATCCCCGAGCTGCCA
GGCGGAGAGGAACTTTTCAGCTCTCTCCAATCTTGTGGGCGACTACGCAG
CACGATGGTATCCGGCAAGGTGGAGAAACTGA
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