mRNA_D-dichotoma_M_contig1014.215.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1014.215.1
Unique NamemRNA_D-dichotoma_M_contig1014.215.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1014.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1014contigD-dichotoma_M_contig1014:208689..209252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.489105-CDS-D-dichotoma_M_contig1014:208688..2089441622927498.489105-CDS-D-dichotoma_M_contig1014:208688..208944Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 208689..208944 +
1690798002.6969216-CDS-D-dichotoma_M_contig1014:208688..2089441690798002.6969216-CDS-D-dichotoma_M_contig1014:208688..208944Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 208689..208944 +
1622927498.5035906-CDS-D-dichotoma_M_contig1014:208977..2092521622927498.5035906-CDS-D-dichotoma_M_contig1014:208977..209252Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 208978..209252 +
1690798002.7105234-CDS-D-dichotoma_M_contig1014:208977..2092521690798002.7105234-CDS-D-dichotoma_M_contig1014:208977..209252Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 208978..209252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1014.215.1prot_D-dichotoma_M_contig1014.215.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1014 208689..209252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1014.215.1

>prot_D-dichotoma_M_contig1014.215.1 ID=prot_D-dichotoma_M_contig1014.215.1|Name=mRNA_D-dichotoma_M_contig1014.215.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=177bp
LCSDTATSRLVDAYERTVVACDEASDRLNMSIAIADGFAEEAIDLQTEAD
RLYQEYMKTPTIARISVSSSASADAVKAVADKAIKSTAKQIQRVGEQGLT
TMKVYETPAIQDREQAMVAMNGLSLAEQFLEEEAQGGEDKCDEVLVMCLS
EMKELRQRYFMPAVAEDAASCHGHVSG
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mRNA from alignment at D-dichotoma_M_contig1014:208689..209252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1014.215.1 ID=mRNA_D-dichotoma_M_contig1014.215.1|Name=mRNA_D-dichotoma_M_contig1014.215.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=564bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:208689..209252+ (Dictyota dichotoma ODC1387m male)
TTATGCAGCGACACTGCCACCAGTAGACTCGTAGATGCCTACGAGAGAAC
AGTTGTCGCTTGCGACGAGGCATCGGATAGGCTAAATATGTCTATCGCCA
TCGCCGACGGTTTTGCAGAAGAAGCCATTGATCTACAAACCGAAGCGGAC
AGGTTGTACCAAGAGTACATGAAGACACCGACTATCGCCAGGATTTCGGT
AAGTAGTAGTGCCTCTGCGGATGCCGTCAAGGCGGTCGCTGACAAGGCCA
TAAAAACGTACGACGAAAAGAAGGGGGCCGCAAACGACTGCACAGCGAAG
CAAATCCAGCGTGTGGGTGAACAGGGGCTTACGACGATGAAGGTGTACGA
GACCCCGGCGATACAAGACAGAGAGCAGGCTATGGTGGCGATGAATGGCT
TGAGCTTGGCGGAGCAGTTTCTGGAAGAAGAGGCTCAAGGAGGTGAAGAT
AAATGCGACGAGGTGTTGGTCATGTGTCTCTCGGAAATGAAAGAACTACG
GCAAAGGTACTTCATGCCGGCCGTCGCAGAGGACGCCGCGTCATGTCACG
GGCACGTATCGGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1014:208689..209252+

>mRNA_D-dichotoma_M_contig1014.215.1 ID=mRNA_D-dichotoma_M_contig1014.215.1|Name=mRNA_D-dichotoma_M_contig1014.215.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1062bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:208689..209252+ (Dictyota dichotoma ODC1387m male)
TTATGCAGCGACACTGCCACCAGTAGACTCGTAGATGCCTACGAGAGAAC
AGTTGTCGCTTGCGACGAGGCATCGGATAGGCTAAATATGTCTATCGCCA
TCGCCGACGGTTTTGCAGAAGAAGCCATTGATCTACAAACCGAAGCGGAC
AGGTTGTACCAAGAGTACATGAAGACACCGACTATCGCCAGGATTTCGGT
AAGTAGTAGTGCCTCTGCGGATGCCGTCAAGGCGGTCGCTGACAAGGCCA
TAAAAATTATGCAGCGACACTGCCACCAGTAGACTCGTAGATGCCTACGA
GAGAACAGTTGTCGCTTGCGACGAGGCATCGGATAGGCTAAATATGTCTA
TCGCCATCGCCGACGGTTTTGCAGAAGAAGCCATTGATCTACAAACCGAA
GCGGACAGGTTGTACCAAGAGTACATGAAGACACCGACTATCGCCAGGAT
TTCGGTAAGTAGTAGTGCCTCTGCGGATGCCGTCAAGGCGGTCGCTGACA
AGGCCATAAAAAGCACAGCGAAGCAAATCCAGCGTGTGGGTGAACAGGGG
CTTACGACGATGAAGGTGTACGAGACCCCGGCGATACAAGACAGAGAGCA
GGCTATGGTGGCGATGAATGGCTTGAGCTTGGCGGAGCAGTTTCTGGAAG
AAGAGGCTCAAGGAGGTGAAGATAAATGCGACGAGGTGTTGGTCATGTGT
CTCTCGGAAATGAAAGAACTACGGCAAAGGTACTTCATGCCGGCCGTCGC
AGAGGACGCCGCGTCATGTCACGGGCACGTATCGGGCGCACAGCGAAGCA
AATCCAGCGTGTGGGTGAACAGGGGCTTACGACGATGAAGGTGTACGAGA
CCCCGGCGATACAAGACAGAGAGCAGGCTATGGTGGCGATGAATGGCTTG
AGCTTGGCGGAGCAGTTTCTGGAAGAAGAGGCTCAAGGAGGTGAAGATAA
ATGCGACGAGGTGTTGGTCATGTGTCTCTCGGAAATGAAAGAACTACGGC
AAAGGTACTTCATGCCGGCCGTCGCAGAGGACGCCGCGTCATGTCACGGG
CACGTATCGGGC
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