mRNA_D-dichotoma_M_contig1014.213.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1014.213.1
Unique NamemRNA_D-dichotoma_M_contig1014.213.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 7.840e-85
Identity = 176/485 (36.29%), Postives = 261/485 (53.81%), Query Frame = 1
Query:    1 PKCKTVLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAPLSKGDGSQTDAEISNRRDT------PYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIE-YKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYLLNI 1434
            P+ +  + T+ +F  K  + GL+  +K R  A+GF Q+ G  +  SSS  PA  SI +A+A            D++ AY  A + EELY+ + DG      +V ++++A+YGL  +G     +    L   G+E+  A+PCVFR+   GKVV II++ VDD++ + + E+ E+L L  LR + P+KDLGE + Y GC I RD +  T T  Q+ Y+  + + F    T   PA               +AE+  +RD       P R+A+G LMW  T TRPD +   + V   +  P    WKA+ + L YL  T+DLG+TY  G+ G+ L  +VDA +A     RRSV+G+AV +    +S  S+ Q + + +TSE+EY+A  E V E  F+  V  F+ P     KI   EDN+GAI +    FSS R++HID   +  R+      + VEY+ + EQ AD+LTKAL     E HR  L+NI
Sbjct:  775 PEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEEL-LTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPAD-------------PNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGS-GLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 1244          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 6.640e-84
Identity = 178/479 (37.16%), Postives = 261/479 (54.49%), Query Frame = 1
Query:    1 PKCKTVLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIE-YKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYLLNI 1434
            P+ +  + T+ +F  K  + GL+  +K R  A+GF Q+ G  +  SSS  PA  SI +A+A            D++ AY  A + EELY+ + DG      +V ++++A+YGL  +G     +    L   G+E+  A+PCVFR+   GKVV II++ VDD++ + + E+ E+L L  LR + P+KDLGE + Y GC I RD +  T T  Q+ Y+  + + F    T   PA    A L    G + D E     D P R+A+G LMW  T TRPD +   + V   +  P    WKA+ + L YL  T+DLG+TY  G+ G+ L  +VDA +A     RRSV+G+AV +    +S  S+ Q + + +TSE+EY+A  E V E  F+  V  F+ P     KI   EDN+GAI +    FSS R++HID   +  R+      + VEY+ + EQ AD+LTKAL     E HR  L+NI
Sbjct: 1328 PEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEEL-LTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPN-ADL----GPKRDDEPGV--DKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGS-GLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 1797          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 2.400e-82
Identity = 173/470 (36.81%), Postives = 259/470 (55.11%), Query Frame = 1
Query:    1 PKCKTVLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTA-GMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIE-YKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTF 1404
            P+   V+  R +FK K  + G + K K R  A+GF+Q  G+ + E+ SPT    SI + +AL    + E   LD+E A+ ++ +  E+ ++LP G      ++ RL K++YGL  A     K+   +L + GFE+S ++PCV R     +V+ II + VDD+L  + T++  ++ +E L  S P K+LGEV  + GC  +RDR+A T+   Q  Y+++V E F+  +T  IPAS    P +       D E     D P+RE VG LMWI   TRP+ S     VA  S  P  + WKA QK L YLK T  L + Y   T   +    +VDAD A+    RRSVSG  V++    +SWFS  Q   + +TSE+EY+A+ + V E  F++ + + + P  +  KI+ +EDN+GAI +A    SS R++HID   +  R+  +   + V +V S EQ AD+LTKAL    F
Sbjct:  252 PEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY-AGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPAS----PANDSRSVMEDEEAG---DVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM)

HSP 1 Score: 262 bits (669), Expect = 2.060e-78
Identity = 161/479 (33.61%), Postives = 262/479 (54.70%), Query Frame = 1
Query:    1 PKCKTVLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGR--LQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGII--PASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIEYKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYL 1425
            P+ K  +G + +F+ K   +G V K+K R  A+G+ Q  G+ F ++ +P   + SI  +LA  A  D E   +DV+ A+L  DV EELY++ PDG+ +  N   +  L++A+YG   A    + K    LE +GF RS+A+PCV+ RRS  +  ++++  VDDL+L S T++  +     L+  F +K+LGE+    G  I R+R+ +T+  +QR Y++ +AE F   K   +  PA      +     ++ +A ++     PYRE VGALM++ T TRPD +     VA F +    +HW A ++ L+YLK T D+G+ + G   G  +  + DA+ A   DTRRS +G    L   AISW S+ Q   AT+++E+EY +L     E   L  + + M    +     Y+DN+G I +A       RT+HI  + +  RD ++   +R++Y  + E  AD +T AL   T ++HR+++
Sbjct:   20 PRDKKAIGFKWVFRIKRDPNGNVVKFKARLVAKGYTQRPGIDFTDTFAPVAREESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNSKLNKHLEDQGFRRSDADPCVYVRRSTDEYSIVVIY-VDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKM---TEEEAFVAKY---PYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDMGIVFNGAIKGEPI-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYTSLYSATQEAVRLRLLLKDMGYEDQGATLIYQDNQGCIALAKNPVYHARTKHIAIKFHFLRDKIERAVIRLDYKPTDEMIADGMTNAL---TRDKHRQFV 487          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 259 bits (663), Expect = 2.290e-77
Identity = 159/472 (33.69%), Postives = 259/472 (54.87%), Query Frame = 1
Query:   16 VLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGII--PASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIEYKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYL 1425
            V+ T+ +F +K  + G + ++K R  A GF Q+ G+ F E+ +   +  SI + L++   A +   QLDV+ A+L AD+ E++YIE P+G +   ++V +L KA+YGL  AG    K   G L   GF+   ++ C++  R+ G    I L  VDD+++   T+       + + + F +K+LG V +  G  I  DR  R ++ +Q  YV+T+ E F+ +    +  P    +  LSK DG + D + +     PYR  +G L ++   TRPD +F   +++ F +NPGP HW A  + L+YLK T D G++YGG         + DAD  T  D RRSVSG+ +M+    I + ++ Q   A ++SE+EY+AL+    E+ ++  +   +   I+  I  +EDN+GAI +A+      RT+HID   +  RD V    +++ YV++  Q AD+LTK+L  K FE  RE +
Sbjct:   37 VIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTYICLY-VDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLK-LSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFEFLRELM 506          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6A4CLK4_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CLK4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 4.280e-76
Identity = 160/466 (34.33%), Postives = 251/466 (53.86%), Query Frame = 1
Query:   19 LGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPS-ICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGII--PASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIEYKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFE 1407
            +G R +F +K  + G V +YK R  A+GF+Q  G+ F E+ SP     S + V L++ A  ++   QLD + A+L +++ + +Y+E+P G   +R    +L KA+YGL  A    +K         GF+   A+ CV+ +RS+   + + L  VDD+++ + T ++ +   + L+++F MK+LG      G  I  D  A T+     RY+  V E F  +    +  P + G+  LSK     TDAE +  R  PYR  +G L++ITT TRPD +FV   ++ F +NP   HW A  + L+YLK T+  G+ Y GGT  + L A+ DAD  T  D RRS SGV VM     + + S+ Q   A +++E+EY+AL+  V E+ +   +   M          +EDN+GAI + +      RT+H+D   +   + V+   V+VEYV +  Q AD+LTKAL  KT +
Sbjct:   38 IGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSTLRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLY-VDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYLKSTLQHGIIYHGGTHTVTLKAYSDADWGTSLDDRRSGSGVMVMTGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQRNATTIWEDNQGAIALVHNAGYHARTKHVDIRHHFTTENVERGTVKVEYVDTKNQLADILTKALGTKTLK 501          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.630e-75
Identity = 156/436 (35.78%), Postives = 242/436 (55.50%), Query Frame = 1
Query:  133 ESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYG-GGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIEYK-INTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYLLNI 1434
            E+ +PT A  S+ +  A+    +      D++ A++++D+ E++++ LP+G       + +L K++YGL  A           L   GF +  A+ CVFR   +G+VVV ++V VDD+  +   E+ +Q    DL +  P+K+LG++  Y GC   RD  A T+   Q+ Y + +   F  +    IP  +G+  LS+ D    D E+ +    P+RE +G+LMW+ T TRPD +     VA +  +P   HW+A    L Y+ RT DLG+T+  G  AG+ +  +VDAD+A+    RRSVSG  VM     ISWFSR Q     +T+E+EYV+LA+V+ E+ FL QV  FM P      I  +EDN+GAI +A    S+  ++HID   +  R+ V  K + + +V+S  Q AD LTKAL    FE HR Y++++
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFG-RDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD---QDEEVVS---WPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 3.200e-74
Identity = 158/446 (35.43%), Postives = 245/446 (54.93%), Query Frame = 1
Query:  103 FRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYG-GGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIEYK-INTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYLLNI 1434
            FR +      E+ +PT A  S+ +  A+    +      D++ A++++D+ E++++ LP+G       + +L K++YGL  A           L   GF +  A+ CVFR   +G+VVV ++V VDD+  +   E+ +Q    DL +  P+K+LG++  Y GC   RD  A T+   Q+ Y + +   F  +    IP  +G+  LS+ D    D E+ +    P+RE +G+LMW+ T TRPD +     VA +  +P   HW+A    L Y+ RT DLG+T+  G  AG+ +  +VDAD+A+    RRSVSG  VM     ISWFSR Q     +T+E+EYV+LA+V+ E+ FL QV  FM P      I  +EDN+GAI +A    S+  ++HID   +  R+ V  K + + +V+S  Q AD LTKAL    FE HR Y++++
Sbjct:  174 FRGLMEADCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFG-RDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD---QDEEVVS---WPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 3.950e-74
Identity = 162/490 (33.06%), Postives = 252/490 (51.43%), Query Frame = 1
Query:    1 PKCKTVLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMA-----LADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQVGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAPLSKGDGSQTDAEISNRRDT------PYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQVKEFMTPPIE-YKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDVKTFERHREYLLNI 1434
            P+ +  +G + +F  K  + GL+   K R  A+ F QI G+ F  SSS  P+  SI   +A+       LA W     DV+ AY+ A + EE Y+  P+G      +V ++++A+YGL  +G     +    L +  +E+   +PCVFR+   G+VV +I++ VDD+L+ +A E + +     L   FP+KDLGE + Y GC I  D +       Q  Y++++ + FD   T   PA+             TDA++   RD       P REA+G LMW T +TRPD +   + +   + +P    W A+ + + YL  T D G+T+  G+ G+ L  + + D       RRS +G+AV +    +   ++ Q V A +TSE+EY+A  E V E  F+  V  F+ P     KI   EDNKGA+ +    FSS R++HID   +  R+      +  EYV +GEQ AD+LTK L  +  E HR+  +N+
Sbjct:   55 PEGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHW-----DVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAA-------------TDADLGPTRDDKPAVDKPVREAIGCLMW-TKLTRPDIALPLNKLHKIAHSPTWRKWNALVRIMSYLNFTKDFGITFVRGS-GLDLSVFAEVD-------RRSTAGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREQLEYHRKARMNL 516          
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 254 bits (648), Expect = 4.010e-74
Identity = 164/472 (34.75%), Postives = 267/472 (56.57%), Query Frame = 1
Query:    1 PKCKTVLGTRIIFKRKVGKDGLVEKYKCRFGAQGFRQIKGLHFQESSSPTPAQPSICVALALMALADWEG*QLDVEMAYLEADVGEELYIELPDGYRESRNQ--VGRLQKAMYGLVHAGLL*SKKFGGELEKKGFERSEANPCVFRRRSQGKVVVIILV*VDDLLLLSATEQDEQLALEDLRSSFPMKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPASLGVAP---LSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHNVADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGT-AGMKLPAWVDADHATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNELRFLSQV-KEFMTPPIEYKINTYEDNKGAI*MANKRFSSRRTRHIDNELYIERDAVDGKNVRVEYVKSGEQQADVLTKALDV 1395
            PK K  L ++ IFK K    G +E+YK R   +G+ QIK + ++E  +P     S+ + LAL+A+ DWE  Q DV+ A+L  D+ EE+Y+  P+G  E+  +  V +L +A+YGL  A     KK    L+ KGF + +++ C++ R   G  V II + VDDLLL++ T    Q     L + F  KD+G V +  G  + R+R  +T++ DQ  Y + V E F+  +  + P      P   LSK +  + + E +  ++  YR  VG+LM++ T +RPD +F    V+ + ++PG AHW A ++ L+Y+K T+  G+   G +  G +L A+VD+D+A   DTRRSVSG  + +   AI++  ++Q   A +++E+EY++LA  V E+ FL ++  E         +N   DN+ AI MAN     +RT+HI +  +  R+ V   ++ +EYV + +  AD+LTK++ V
Sbjct:   79 PKGKRALTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEVYMIQPEGLEEAGKEDLVCQLLQALYGLKQAPRAWHKKLTDYLKSKGFVKLDSDSCIYVRTG-GSGVAIIGIYVDDLLLIADTASRIQEMKSMLSAGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQ--LNPCKTPCDPNVILSKENCPKNEDERAQMKNKDYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGLAHWNAAKRILRYVKGTIGYGLVIDGRSRTGKQLTAFVDSDYAKDIDTRRSVSGYVMQMGDCAITYSCKSQRTVALSSTEAEYMSLAHGVKEMLFLRELLMELGVQQHSTAVNV--DNQSAIAMANNPVHHQRTKHIHSRYHFVRERVAMGDIFIEYVGTKDNVADLLTKSVTV 545          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1014.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE7.840e-8536.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE6.640e-8437.16Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.400e-8236.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3G9E3_PHYRM2.060e-7833.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL2.290e-7733.69Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6A4CLK4_9STRA4.280e-7634.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JLN0_9PHAE1.630e-7535.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.200e-7435.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1G1_9PHAE3.950e-7433.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A225WDK2_9STRA4.010e-7434.75Integrase, catalytic core protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1014contigD-dichotoma_M_contig1014:99758..101191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue9.9e-33
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1434
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1014.213.1prot_D-dichotoma_M_contig1014.213.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1014 100310..100999 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.7193859-UTR-D-dichotoma_M_contig1014:99757..1003091622927498.7193859-UTR-D-dichotoma_M_contig1014:99757..100309Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1014 99758..100309 +
1690798002.818434-UTR-D-dichotoma_M_contig1014:99757..1003091690798002.818434-UTR-D-dichotoma_M_contig1014:99757..100309Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1014 99758..100309 +
1622927498.7573261-UTR-D-dichotoma_M_contig1014:100999..1011911622927498.7573261-UTR-D-dichotoma_M_contig1014:100999..101191Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1014 101000..101191 +
1690798002.8359652-UTR-D-dichotoma_M_contig1014:100999..1011911690798002.8359652-UTR-D-dichotoma_M_contig1014:100999..101191Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1014 101000..101191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.7296145-CDS-D-dichotoma_M_contig1014:100309..1009991622927498.7296145-CDS-D-dichotoma_M_contig1014:100309..100999Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 100310..100999 +
1690798002.8281024-CDS-D-dichotoma_M_contig1014:100309..1009991690798002.8281024-CDS-D-dichotoma_M_contig1014:100309..100999Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 100310..100999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1014.213.1

>prot_D-dichotoma_M_contig1014.213.1 ID=prot_D-dichotoma_M_contig1014.213.1|Name=mRNA_D-dichotoma_M_contig1014.213.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=230bp
MKDLGEVSNYPGCHITRDRKARTVTFDQRRYVQTVAECFDTKKTGIIPAS
LGVAPLSKGDGSQTDAEISNRRDTPYREAVGALMWITTMTRPDRSFVAHN
VADFSDNPGPAHWKAVQKALQYLKRTVDLGVTYGGGTAGMKLPAWVDADH
ATGPDTRRSVSGVAVMLEWRAISWFSRAQWVAATATSESEYVALAEVVNE
LRFLSQVKEFMTPPIEYKINTYEDNKGAI*
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mRNA from alignment at D-dichotoma_M_contig1014:99758..101191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1014.213.1 ID=mRNA_D-dichotoma_M_contig1014.213.1|Name=mRNA_D-dichotoma_M_contig1014.213.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:99758..101191+ (Dictyota dichotoma ODC1387m male)
CCCAAGTGCAAGACTGTGCTCGGCACGAGAATCATCTTCAAGAGGAAGGT CGGCAAGGACGGGCTGGTGGAAAAGTATAAATGCCGCTTCGGAGCTCAAG GTTTTCGCCAAATCAAGGGACTCCACTTCCAGGAATCATCCTCGCCGACA CCTGCGCAGCCCAGCATTTGCGTGGCTCTTGCATTGATGGCTCTGGCGGA CTGGGAAGGGTGACAGTTGGACGTCGAAATGGCATACCTCGAGGCGGACG TTGGAGAGGAACTCTACATCGAGCTTCCCGACGGGTATCGTGAGTCGCGG AATCAGGTGGGTCGACTGCAGAAAGCCATGTACGGACTCGTCCATGCGGG GCTGCTGTAGTCGAAGAAATTCGGTGGCGAGCTTGAGAAGAAGGGATTCG AGAGGTCAGAAGCAAACCCCTGTGTGTTCCGGAGGAGATCCCAAGGAAAG GTGGTCGTCATCATCCTGGTCTAAGTCGACGATCTTCTTTTGTTAAGCGC GACGGAGCAGGACGAACAGCTAGCGCTCGAGGATCTCCGATCCAGTTTCC CCATGAAGGATTTGGGGGAAGTTTCCAACTACCCGGGATGCCACATTACT CGCGACCGCAAGGCGCGGACGGTAACGTTCGACCAACGCCGTTACGTGCA GACCGTGGCCGAGTGCTTCGACACGAAGAAGACGGGCATCATACCCGCTT CACTGGGAGTGGCCCCCCTATCCAAGGGGGACGGATCGCAGACAGACGCT GAAATCTCGAACAGGCGTGACACACCATACCGGGAGGCGGTGGGGGCACT GATGTGGATCACCACCATGACACGGCCCGACCGTTCGTTCGTCGCCCACA ATGTTGCCGACTTCAGCGACAACCCAGGACCTGCGCACTGGAAGGCGGTA CAGAAGGCACTGCAGTACCTGAAGCGAACGGTGGACCTCGGGGTGACGTA CGGAGGTGGGACAGCGGGAATGAAGCTACCAGCGTGGGTCGACGCAGACC ACGCGACCGGCCCGGACACACGTCGCTCAGTCTCCGGAGTCGCAGTGATG CTCGAATGGCGAGCGATCAGTTGGTTCTCCCGTGCGCAATGGGTGGCCGC TACCGCCACGTCAGAATCAGAATATGTTGCGCTCGCAGAGGTCGTGAACG AGCTGCGTTTTCTTTCCCAGGTGAAGGAATTCATGACGCCTCCCATTGAG TACAAAATCAACACATATGAAGATAATAAAGGGGCAATTTAGATGGCGAA CAAAAGGTTTAGCAGCCGGCGTACGCGACACATAGACAACGAACTCTATA TTGAACGAGACGCAGTAGATGGGAAAAACGTCCGGGTGGAATACGTCAAG TCAGGGGAGCAGCAAGCCGATGTACTGACCAAGGCATTGGACGTTAAAAC ATTTGAGAGGCATAGAGAATATTTATTGAACATT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1014:99758..101191+

>mRNA_D-dichotoma_M_contig1014.213.1 ID=mRNA_D-dichotoma_M_contig1014.213.1|Name=mRNA_D-dichotoma_M_contig1014.213.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1380bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:99758..101191+ (Dictyota dichotoma ODC1387m male)
ATGAAGGATTTGGGGGAAGTTTCCAACTACCCGGGATGCCACATTACTCG
CGACCGCAAGGCGCGGACGGTAACGTTCGACCAACGCCGTTACGTGCAGA
CCGTGGCCGAGTGCTTCGACACGAAGAAGACGGGCATCATACCCGCTTCA
CTGGGAGTGGCCCCCCTATCCAAGGGGGACGGATCGCAGACAGACGCTGA
AATCTCGAACAGGCGTGACACACCATACCGGGAGGCGGTGGGGGCACTGA
TGTGGATCACCACCATGACACGGCCCGACCGTTCGTTCGTCGCCCACAAT
GTTGCCGACTTCAGCGACAACCCAGGACCTGCGCACTGGAAGGCGGTACA
GAAGGCACTGCAGTACCTGAAGCGAACGGTGGACCTCGGGGTGACGTACG
GAGGTGGGACAGCGGGAATGAAGCTACCAGCGTGGGTCGACGCAGACCAC
GCGACCGGCCCGGACACACGTCGCTCAGTCTCCGGAGTCGCAGTGATGCT
CGAATGGCGAGCGATCAGTTGGTTCTCCCGTGCGCAATGGGTGGCCGCTA
CCGCCACGTCAGAATCAGAATATGTTGCGCTCGCAGAGGTCGTGAACGAG
CTGCGTTTTCTTTCCCAGGTGAAGGAATTCATGACGCCTCCCATTGAGTA
CAAAATCAACACATATGAAGATAATAAAGGGGCAATTTAGATGAAGGATT
TGGGGGAAGTTTCCAACTACCCGGGATGCCACATTACTCGCGACCGCAAG
GCGCGGACGGTAACGTTCGACCAACGCCGTTACGTGCAGACCGTGGCCGA
GTGCTTCGACACGAAGAAGACGGGCATCATACCCGCTTCACTGGGAGTGG
CCCCCCTATCCAAGGGGGACGGATCGCAGACAGACGCTGAAATCTCGAAC
AGGCGTGACACACCATACCGGGAGGCGGTGGGGGCACTGATGTGGATCAC
CACCATGACACGGCCCGACCGTTCGTTCGTCGCCCACAATGTTGCCGACT
TCAGCGACAACCCAGGACCTGCGCACTGGAAGGCGGTACAGAAGGCACTG
CAGTACCTGAAGCGAACGGTGGACCTCGGGGTGACGTACGGAGGTGGGAC
AGCGGGAATGAAGCTACCAGCGTGGGTCGACGCAGACCACGCGACCGGCC
CGGACACACGTCGCTCAGTCTCCGGAGTCGCAGTGATGCTCGAATGGCGA
GCGATCAGTTGGTTCTCCCGTGCGCAATGGGTGGCCGCTACCGCCACGTC
AGAATCAGAATATGTTGCGCTCGCAGAGGTCGTGAACGAGCTGCGTTTTC
TTTCCCAGGTGAAGGAATTCATGACGCCTCCCATTGAGTACAAAATCAAC
ACATATGAAGATAATAAAGGGGCAATTTAG
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