mRNA_D-dichotoma_M_contig1014.212.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1014.212.1
Unique NamemRNA_D-dichotoma_M_contig1014.212.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1014.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1014contigD-dichotoma_M_contig1014:76752..77981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size211
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.4266768-CDS-D-dichotoma_M_contig1014:76752..768601622927498.4266768-CDS-D-dichotoma_M_contig1014:76752..76860Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 76753..76860 -
1690798002.6777961-CDS-D-dichotoma_M_contig1014:76752..768601690798002.6777961-CDS-D-dichotoma_M_contig1014:76752..76860Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 76753..76860 -
1622927498.449692-CDS-D-dichotoma_M_contig1014:77879..779811622927498.449692-CDS-D-dichotoma_M_contig1014:77879..77981Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 77880..77981 -
1690798002.6863503-CDS-D-dichotoma_M_contig1014:77879..779811690798002.6863503-CDS-D-dichotoma_M_contig1014:77879..77981Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 77880..77981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1014.212.1prot_D-dichotoma_M_contig1014.212.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1014 76753..77981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1014.212.1

>prot_D-dichotoma_M_contig1014.212.1 ID=prot_D-dichotoma_M_contig1014.212.1|Name=mRNA_D-dichotoma_M_contig1014.212.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=70bp
PAATTVSGGTTDSSNVIFEAFMAGTEAEGASDKGILRMDGGTEWKGEFDE
ICDRERIRREVVPPHSPQFN
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mRNA from alignment at D-dichotoma_M_contig1014:76752..77981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1014.212.1 ID=mRNA_D-dichotoma_M_contig1014.212.1|Name=mRNA_D-dichotoma_M_contig1014.212.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:76752..77981- (Dictyota dichotoma ODC1387m male)
CCTGCTGCTACTACAGTAAGCGGTGGGACGACAGATTCTTCGAATGTGAT
TTTCGAAGCGTTCATGGCGGGGACCGAGGCGGAGGGTGCTTCAGACAAAG
GTGTGTCAGAGTTCGGTTTGAGTGGGCATGTTAGTAGGGTTGAGTCGCGC
CCGTATCCTGATATTTCAATGTTTGTAAATGCAGTCAAGGCAGATGGTAA
ACCGGCCCTGTTCGAGTGGGCTGCTGATTCCGGTAGCAGCCGGCATGTGA
CCAACTCGAGAATAGGGATGAGAAAGTTTAAGCCTGAGACTAACTATCAC
TTGGGTACTGCAGGTTTGGGCCAAAGTATCGAGGTGCTTGGTAGAGGCGA
TCTTGAAGTTGCGTTTAAGTCAGACTCGGCTGAGAATCCAGGAGTGATGC
ATACTTTCATCGTGCTTCTCAAAGACGTACTGTATGCTCCCAACCTCGCG
TTGAATCTTGTTTCCTTGCGCGCACTTGATGCCAACGGAGTGGAATACGT
TGGTAAGAGGGGCATGATCTCGTTGTTTGGGGAGAAGTTACGCTTTCAAG
TCAAGGATAATTTGTACAAGCTTGCGGGTTATCCAGTGACCAGAAACATG
AAACTTGAAATGGAAGATTCCGGTAATATTCACATGTGCAATCAATTTGG
AGGTGTGAGTGAGCCTGTATGTGAAACGCCTGACCAGCCTGGTGAACCAC
CTGATCAAGCGTGTAGAGCTGTTGTTGCACCTGCTCGAACTCCTCTTAAA
GAGGTAGATTGGAACGTGTTCCATGCTTCTGTAGGTCATATGAGTAAGGA
ATTGCTTGCAGCATCGGCGAAATCCATGGGCGTAACGTTGACCGGTCATT
TGCATCCATGCGAAGGCTGTCTAGCAGCTAAGGGGATCAGAAACCAATCC
CGAAGACAACCGAAACCCGTTCTGAGAAAATTTTGGGCCGCGTGTATTGC
GATAATGCGAGCCCTAAAGAGACGATGGGTAGGGGGGGCAAGCGATATGC
GATAGTGTTCCGAGATGACCTGTCACGCCTATTGCGGGTCTACTATCTTG
CTAAGAAGAGTGATGCCCCGCGAGCGCTTGAAATGTTTTTGTCTGATACG
CGTCCTGATGGTTCGGTAGAGATTCTCCGGATGGATGGTGGAACAGAGTG
GAAGGGCGAGTTTGATGAAATCTGCGACAGGGAGAGGATTCGAAGGGAGG
TGGTTCCACCTCATTCGCCCCAGTTCAACG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1014:76752..77981-

>mRNA_D-dichotoma_M_contig1014.212.1 ID=mRNA_D-dichotoma_M_contig1014.212.1|Name=mRNA_D-dichotoma_M_contig1014.212.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=420bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:76752..77981- (Dictyota dichotoma ODC1387m male)
CCTGCTGCTACTACAGTAAGCGGTGGGACGACAGATTCTTCGAATGTGAT
TTTCGAAGCGTTCATGGCGGGGACCGAGGCGGAGGGTGCTTCAGACAAAG
GTCCTGCTGCTACTACAGTAAGCGGTGGGACGACAGATTCTTCGAATGTG
ATTTTCGAAGCGTTCATGGCGGGGACCGAGGCGGAGGGTGCTTCAGACAA
AGGTATTCTCCGGATGGATGGTGGAACAGAGTGGAAGGGCGAGTTTGATG
AAATCTGCGACAGGGAGAGGATTCGAAGGGAGGTGGTTCCACCTCATTCG
CCCCAGTTCAACATTCTCCGGATGGATGGTGGAACAGAGTGGAAGGGCGA
GTTTGATGAAATCTGCGACAGGGAGAGGATTCGAAGGGAGGTGGTTCCAC
CTCATTCGCCCCAGTTCAAC
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