mRNA_D-dichotoma_M_contig1014.210.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1014.210.1
Unique NamemRNA_D-dichotoma_M_contig1014.210.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1014.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1014contigD-dichotoma_M_contig1014:30346..31143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size778
Cds size771
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1014.210.1prot_D-dichotoma_M_contig1014.210.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1014 30352..31143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.3472848-UTR-D-dichotoma_M_contig1014:30345..303511622927498.3472848-UTR-D-dichotoma_M_contig1014:30345..30351Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1014 30346..30351 +
1690798002.6482139-UTR-D-dichotoma_M_contig1014:30345..303511690798002.6482139-UTR-D-dichotoma_M_contig1014:30345..30351Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1014 30346..30351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.3620503-CDS-D-dichotoma_M_contig1014:30351..306011622927498.3620503-CDS-D-dichotoma_M_contig1014:30351..30601Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 30352..30601 +
1690798002.6572297-CDS-D-dichotoma_M_contig1014:30351..306011690798002.6572297-CDS-D-dichotoma_M_contig1014:30351..30601Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 30352..30601 +
1622927498.378295-CDS-D-dichotoma_M_contig1014:30622..311431622927498.378295-CDS-D-dichotoma_M_contig1014:30622..31143Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 30623..31143 +
1690798002.6681302-CDS-D-dichotoma_M_contig1014:30622..311431690798002.6681302-CDS-D-dichotoma_M_contig1014:30622..31143Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1014 30623..31143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1014.210.1

>prot_D-dichotoma_M_contig1014.210.1 ID=prot_D-dichotoma_M_contig1014.210.1|Name=mRNA_D-dichotoma_M_contig1014.210.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=257bp
MSASSRQVINSRDVTWKTLGPAAEPSSGDATPMGNNNGVSAINEVGQTEG
HPDGQTAARTTVMTLTESRPPSGNLGSVSRNIGGVNRNIGPANRYIGPPN
RNIGTSDRDTGIASGNVGPPTTAEEYHDPRLARGEVSNEQDIVEGSEGGV
GPPSPSTEPSSGDFNNDDAAVDALRRSNREGLPGATDRDQDADPSVGDLR
DNPSIRDEDDSPSVVDPRDNSPMGDPGTISDGAEPQHLHPDQRNTAATTA
QRQLGGH
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mRNA from alignment at D-dichotoma_M_contig1014:30346..31143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1014.210.1 ID=mRNA_D-dichotoma_M_contig1014.210.1|Name=mRNA_D-dichotoma_M_contig1014.210.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=798bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:30346..31143+ (Dictyota dichotoma ODC1387m male)
AGGTTGATGTCTGCGAGCTCGCGTCAGGTCATCAACTCCCGTGACGTTAC
CTGGAAGACCCTAGGCCCTGCCGCCGAGCCCTCGTCGGGGGACGCTACCC
CCATGGGCAACAACAACGGGGTCTCGGCTATCAACGAGGTAGGTCAGACA
GAGGGCCACCCTGACGGCCAGACTGCCGCGAGAACTACGGTGATGACTCT
GACTGAATCACGACCCCCCAGCGGGAACCTGGGATCCGTGAGCCGGAACA
TCGGAGGCGTGAACCGGAACGTCGGAGGCGTGAACCGGAACATCGGACCC
GCGAACCGGTACATCGGACCCCCGAACCGGAACATCGGGACCTCGGACAG
GGACACTGGGATTGCATCGGGAAACGTGGGACCACCAACTACTGCAGAAG
AATATCATGACCCAAGACTAGCAAGAGGAGAAGTTTCAAATGAGCAAGAC
ATCGTCGAGGGCAGCGAGGGGGGCGTGGGTCCGCCTTCACCATCAACCGA
GCCGTCGAGTGGAGACTTCAACAACGATGACGCTGCTGTCGATGCTCTCC
GACGGAGCAACCGAGAAGGACTGCCTGGTGCAACAGACCGAGACCAAGAC
GCCGACCCCTCAGTGGGAGATCTGCGGGACAATCCTTCAATCAGAGACGA
AGACGACAGCCCCTCGGTGGTAGATCCGCGGGACAATTCACCAATGGGGG
ATCCCGGGACAATCTCCGACGGGGCAGAGCCGCAGCATCTCCACCCGGAC
CAACGCAACACCGCGGCAACCACGGCACAACGACAACTAGGGGGCCAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1014:30346..31143+

>mRNA_D-dichotoma_M_contig1014.210.1 ID=mRNA_D-dichotoma_M_contig1014.210.1|Name=mRNA_D-dichotoma_M_contig1014.210.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1542bp|location=Sequence derived from alignment at D-dichotoma_M_contig1014:30346..31143+ (Dictyota dichotoma ODC1387m male)
ATGTCTGCGAGCTCGCGTCAGGTCATCAACTCCCGTGACGTTACCTGGAA
GACCCTAGGCCCTGCCGCCGAGCCCTCGTCGGGGGACGCTACCCCCATGG
GCAACAACAACGGGGTCTCGGCTATCAACGAGGTAGGTCAGACAGAGGGC
CACCCTGACGGCCAGACTGCCGCGAGAACTACGGTGATGACTCTGACTGA
ATCACGACCCCCCAGCGGGAACCTGGGATCCGTGAGCCGGAACATCGGAG
ATGTCTGCGAGCTCGCGTCAGGTCATCAACTCCCGTGACGTTACCTGGAA
GACCCTAGGCCCTGCCGCCGAGCCCTCGTCGGGGGACGCTACCCCCATGG
GCAACAACAACGGGGTCTCGGCTATCAACGAGGTAGGTCAGACAGAGGGC
CACCCTGACGGCCAGACTGCCGCGAGAACTACGGTGATGACTCTGACTGA
ATCACGACCCCCCAGCGGGAACCTGGGATCCGTGAGCCGGAACATCGGAG
GCGTGAACCGGAACATCGGACCCGCGAACCGGTACATCGGACCCCCGAAC
CGGAACATCGGGACCTCGGACAGGGACACTGGGATTGCATCGGGAAACGT
GGGACCACCAACTACTGCAGAAGAATATCATGACCCAAGACTAGCAAGAG
GAGAAGTTTCAAATGAGCAAGACATCGTCGAGGGCAGCGAGGGGGGCGTG
GGTCCGCCTTCACCATCAACCGAGCCGTCGAGTGGAGACTTCAACAACGA
TGACGCTGCTGTCGATGCTCTCCGACGGAGCAACCGAGAAGGACTGCCTG
GTGCAACAGACCGAGACCAAGACGCCGACCCCTCAGTGGGAGATCTGCGG
GACAATCCTTCAATCAGAGACGAAGACGACAGCCCCTCGGTGGTAGATCC
GCGGGACAATTCACCAATGGGGGATCCCGGGACAATCTCCGACGGGGCAG
AGCCGCAGCATCTCCACCCGGACCAACGCAACACCGCGGCAACCACGGCA
CAACGACAACTAGGGGGCCACGCGTGAACCGGAACATCGGACCCGCGAAC
CGGTACATCGGACCCCCGAACCGGAACATCGGGACCTCGGACAGGGACAC
TGGGATTGCATCGGGAAACGTGGGACCACCAACTACTGCAGAAGAATATC
ATGACCCAAGACTAGCAAGAGGAGAAGTTTCAAATGAGCAAGACATCGTC
GAGGGCAGCGAGGGGGGCGTGGGTCCGCCTTCACCATCAACCGAGCCGTC
GAGTGGAGACTTCAACAACGATGACGCTGCTGTCGATGCTCTCCGACGGA
GCAACCGAGAAGGACTGCCTGGTGCAACAGACCGAGACCAAGACGCCGAC
CCCTCAGTGGGAGATCTGCGGGACAATCCTTCAATCAGAGACGAAGACGA
CAGCCCCTCGGTGGTAGATCCGCGGGACAATTCACCAATGGGGGATCCCG
GGACAATCTCCGACGGGGCAGAGCCGCAGCATCTCCACCCGGACCAACGC
AACACCGCGGCAACCACGGCACAACGACAACTAGGGGGCCAC
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