mRNA_D-dichotoma_M_contig1013.202.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1013.202.1
Unique NamemRNA_D-dichotoma_M_contig1013.202.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1013.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1013contigD-dichotoma_M_contig1013:101031..101470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size440
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.2611544-CDS-D-dichotoma_M_contig1013:101030..1014681622927497.2611544-CDS-D-dichotoma_M_contig1013:101030..101468Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1013 101031..101468 +
1690798002.1548238-CDS-D-dichotoma_M_contig1013:101030..1014681690798002.1548238-CDS-D-dichotoma_M_contig1013:101030..101468Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1013 101031..101468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1013.202.1prot_D-dichotoma_M_contig1013.202.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1013 101031..101468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1013.202.1

>prot_D-dichotoma_M_contig1013.202.1 ID=prot_D-dichotoma_M_contig1013.202.1|Name=mRNA_D-dichotoma_M_contig1013.202.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=146bp
SLARTKIGSLRHTTTIQAHHAVRCQPPPTPRSSHARLLSLNYTFVPTTTA
IQRSFHCWGFAFVPRSSHAHPTSVPTASCPSHAPLRSLNYTSILTNPPLS
LYGHHPVATLQTPWVHPRNKRSLCLHKQLATFTPSPNRHTTLYATT
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mRNA from alignment at D-dichotoma_M_contig1013:101031..101470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1013.202.1 ID=mRNA_D-dichotoma_M_contig1013.202.1|Name=mRNA_D-dichotoma_M_contig1013.202.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=440bp|location=Sequence derived from alignment at D-dichotoma_M_contig1013:101031..101470+ (Dictyota dichotoma ODC1387m male)
TCCTTAGCCCGCACGAAAATTGGCAGCCTTCGACACACTACCACCATCCA
GGCACACCACGCTGTGCGCTGCCAACCCCCGCCTACTCCGCGTTCATCCC
ATGCCCGGCTCCTTTCTCTCAACTACACATTCGTCCCCACCACCACTGCC
ATTCAGCGCTCGTTCCATTGCTGGGGCTTCGCATTCGTTCCACGCTCCTC
ACACGCACACCCCACTTCCGTACCCACCGCTTCATGTCCGTCGCATGCCC
CGTTGCGGTCACTCAACTACACATCCATTCTCACCAATCCACCTCTCTCA
CTGTACGGACACCACCCTGTGGCCACCCTTCAAACCCCCTGGGTGCACCC
ACGTAACAAGCGTTCCCTTTGCCTGCACAAACAATTGGCAACCTTCACAC
CATCACCAAACAGGCACACCACGCTTTATGCCACCACCCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1013:101031..101470+

>mRNA_D-dichotoma_M_contig1013.202.1 ID=mRNA_D-dichotoma_M_contig1013.202.1|Name=mRNA_D-dichotoma_M_contig1013.202.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=876bp|location=Sequence derived from alignment at D-dichotoma_M_contig1013:101031..101470+ (Dictyota dichotoma ODC1387m male)
TCCTTAGCCCGCACGAAAATTGGCAGCCTTCGACACACTACCACCATCCA
GGCACACCACGCTGTGCGCTGCCAACCCCCGCCTACTCCGCGTTCATCCC
ATGCCCGGCTCCTTTCTCTCAACTACACATTCGTCCCCACCACCACTGCC
ATTCAGCGCTCGTTCCATTGCTGGGGCTTCGCATTCGTTCCACGCTCCTC
ACACGCACACCCCACTTCCGTACCCACCGCTTCATGTCCGTCGCATGCCC
CGTTGCGGTCACTCAACTACACATCCATTCTCACCAATCCACCTCTCTCA
CTGTACGGACACCACCCTGTGGCCACCCTTCAAACCCCCTGGGTGCACCC
ACGTAACAAGCGTTCCCTTTGCCTGCACAAACAATTGGCAACCTTCACAC
CATCACCAAACAGGCACACCACGCTTTATGCCACCACCTCCTTAGCCCGC
ACGAAAATTGGCAGCCTTCGACACACTACCACCATCCAGGCACACCACGC
TGTGCGCTGCCAACCCCCGCCTACTCCGCGTTCATCCCATGCCCGGCTCC
TTTCTCTCAACTACACATTCGTCCCCACCACCACTGCCATTCAGCGCTCG
TTCCATTGCTGGGGCTTCGCATTCGTTCCACGCTCCTCACACGCACACCC
CACTTCCGTACCCACCGCTTCATGTCCGTCGCATGCCCCGTTGCGGTCAC
TCAACTACACATCCATTCTCACCAATCCACCTCTCTCACTGTACGGACAC
CACCCTGTGGCCACCCTTCAAACCCCCTGGGTGCACCCACGTAACAAGCG
TTCCCTTTGCCTGCACAAACAATTGGCAACCTTCACACCATCACCAAACA
GGCACACCACGCTTTATGCCACCACC
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