mRNA_D-dichotoma_M_contig1013.201.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1013.201.1
Unique NamemRNA_D-dichotoma_M_contig1013.201.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1013.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1013contigD-dichotoma_M_contig1013:95101..95807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size707
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.2038505-CDS-D-dichotoma_M_contig1013:95100..954721622927497.2038505-CDS-D-dichotoma_M_contig1013:95100..95472Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1013 95101..95472 +
1690798002.133877-CDS-D-dichotoma_M_contig1013:95100..954721690798002.133877-CDS-D-dichotoma_M_contig1013:95100..95472Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1013 95101..95472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.2190602-UTR-D-dichotoma_M_contig1013:95472..958071622927497.2190602-UTR-D-dichotoma_M_contig1013:95472..95807Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 95473..95807 +
1690798002.1449075-UTR-D-dichotoma_M_contig1013:95472..958071690798002.1449075-UTR-D-dichotoma_M_contig1013:95472..95807Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 95473..95807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1013.201.1prot_D-dichotoma_M_contig1013.201.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1013 95101..95472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1013.201.1

>prot_D-dichotoma_M_contig1013.201.1 ID=prot_D-dichotoma_M_contig1013.201.1|Name=mRNA_D-dichotoma_M_contig1013.201.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=124bp
PVTTPLARCNRWCTVLCPYCTVPTAATALDRTDIIPRSPVATNYATRYPH
RTVLGAAAVLRCNSTVPQPFQQLRGIGSSSNDPCLVPRHQIVASNQLLTS
CTTTGMLRTFMRPWSKGPALTKL*
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mRNA from alignment at D-dichotoma_M_contig1013:95101..95807+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1013.201.1 ID=mRNA_D-dichotoma_M_contig1013.201.1|Name=mRNA_D-dichotoma_M_contig1013.201.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=707bp|location=Sequence derived from alignment at D-dichotoma_M_contig1013:95101..95807+ (Dictyota dichotoma ODC1387m male)
CCCGTGACAACTCCCCTTGCTCGCTGCAATCGTTGGTGTACTGTTCTATG
CCCGTACTGCACCGTTCCCACCGCAGCTACAGCACTGGACCGTACCGACA
TCATACCTCGCTCCCCCGTCGCAACCAACTACGCTACACGGTACCCGCAT
CGTACCGTGCTCGGCGCAGCCGCGGTGCTAAGATGTAATAGTACTGTACC
ACAACCGTTCCAACAGCTTCGAGGTATAGGATCTTCAAGTAACGATCCGT
GTCTCGTCCCGAGGCATCAAATCGTGGCATCAAATCAGCTGTTGACCTCT
TGCACCACGACAGGCATGTTAAGGACATTCATGCGACCCTGGTCGAAGGG
CCCCGCCCTGACCAAACTGTAGCTCCACGCTTCTACCACCATCAATTTGA
GTTTACTGTCACATCTCCCACTGATGAGGCTCTCCTCCCCCGCGATCTCG
TAGGTAACATCCCACGTTTCAGCGCCCACGCAGCAAATACGAGCCTCCTC
GCTAACCCTCTCCATCGTCCCTACCCGGCCGGCACCCCAGGCAACGCTTT
CCGTCAGCCAACTTCACCTCCCCCAGACAGCAGACGCACCTTCACACCGG
GATCCCAGGCGACCTCCCCCAGCAGTACGAACCCCAACGTCGACTCCACC
CTAATCCCTACACCCACACCCTCAGGCGGCAGCTCCGAGCCCAACGCGGC
AGGCAAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1013:95101..95807+

>mRNA_D-dichotoma_M_contig1013.201.1 ID=mRNA_D-dichotoma_M_contig1013.201.1|Name=mRNA_D-dichotoma_M_contig1013.201.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=744bp|location=Sequence derived from alignment at D-dichotoma_M_contig1013:95101..95807+ (Dictyota dichotoma ODC1387m male)
CCCGTGACAACTCCCCTTGCTCGCTGCAATCGTTGGTGTACTGTTCTATG
CCCGTACTGCACCGTTCCCACCGCAGCTACAGCACTGGACCGTACCGACA
TCATACCTCGCTCCCCCGTCGCAACCAACTACGCTACACGGTACCCGCAT
CGTACCGTGCTCGGCGCAGCCGCGGTGCTAAGATGTAATAGTACTGTACC
ACAACCGTTCCAACAGCTTCGAGGTATAGGATCTTCAAGTAACGATCCGT
GTCTCGTCCCGAGGCATCAAATCGTGGCATCAAATCAGCTGTTGACCTCT
TGCACCACGACAGGCATGTTAAGGACATTCATGCGACCCTGGTCGAAGGG
CCCCGCCCTGACCAAACTGTAGCCCGTGACAACTCCCCTTGCTCGCTGCA
ATCGTTGGTGTACTGTTCTATGCCCGTACTGCACCGTTCCCACCGCAGCT
ACAGCACTGGACCGTACCGACATCATACCTCGCTCCCCCGTCGCAACCAA
CTACGCTACACGGTACCCGCATCGTACCGTGCTCGGCGCAGCCGCGGTGC
TAAGATGTAATAGTACTGTACCACAACCGTTCCAACAGCTTCGAGGTATA
GGATCTTCAAGTAACGATCCGTGTCTCGTCCCGAGGCATCAAATCGTGGC
ATCAAATCAGCTGTTGACCTCTTGCACCACGACAGGCATGTTAAGGACAT
TCATGCGACCCTGGTCGAAGGGCCCCGCCCTGACCAAACTGTAG
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