mRNA_D-dichotoma_M_contig1013.199.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1013.199.1
Unique NamemRNA_D-dichotoma_M_contig1013.199.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1013.199.1 vs. uniprot
Match: A0A7R9ZC58_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZC58_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.470e-9
Identity = 42/123 (34.15%), Postives = 57/123 (46.34%), Query Frame = 3 
Query: 1326 FTPPYCPDFQPIELFWGDAKNSVSSTYPGEDKGRTMLKVFMSLRRGWYGG----------------DSVDGREPKAPIYFKALVRHSITKVNEAIARDEVLSGSVEDGLDNIPPYKVSRDAGL 1646
            +T PYCPD QPIELFW  AKN  +  Y     GR +  +   LR GWYG                 D +   E +  +   AL+RH++   NE +     +SG V  GL   P Y+ + +A L
Sbjct:   41 WTLPYCPDLQPIELFWAAAKNYAAQKYYS---GRKVRAMIADLRDGWYGNVYRKDDGTEEIQKGEDDEIGVLEKRGAVNCAALIRHAVKCANERMRYLPGVSGEVGKGLTVDPNYEPNPNARL 160
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BLAST of mRNA_D-dichotoma_M_contig1013.199.1 vs. uniprot
Match: A0A815DPX7_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815DPX7_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 7.280e-5
Identity = 32/106 (30.19%), Postives = 50/106 (47.17%), Query Frame = 3 
Query: 1308 DAGYMPFTPPYCPDFQPIELFWGDAKNSVSSTYPGEDKGRTMLKVFMSLRRGWYGGDSVDGREPKAPIYFKALVRHSITKVNEAIARDEVLSGSVEDGLDNIPPYK 1625
            D  Y+ +TPPYCP  QPIEL W   K  V+  +      RT+ ++    + G+YG  +    E  +    + ++ H+    N  I  D  L GS+ D L  +  Y+
Sbjct:    3 DFHYLIYTPPYCPQVQPIELVWAYVKAYVAKQFTTS---RTLQQLIEHTKEGFYGNGAE--HEGVSSEMIRKMILHTHKYCNMFIDNDCWLEGSI-DNLKTVDQYE 102
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1013.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7R9ZC58_9STRA1.470e-934.15Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A815DPX7_9BILA7.280e-530.19Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1013contigD-dichotoma_M_contig1013:33675..37074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1955
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1013.199.1prot_D-dichotoma_M_contig1013.199.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1013 36244..36882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.6782475-UTR-D-dichotoma_M_contig1013:33674..340331622927497.6782475-UTR-D-dichotoma_M_contig1013:33674..34033Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 33675..34033 +
1690798002.289406-UTR-D-dichotoma_M_contig1013:33674..340331690798002.289406-UTR-D-dichotoma_M_contig1013:33674..34033Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 33675..34033 +
1622927497.6910856-UTR-D-dichotoma_M_contig1013:35478..362431622927497.6910856-UTR-D-dichotoma_M_contig1013:35478..36243Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 35479..36243 +
1690798002.2977061-UTR-D-dichotoma_M_contig1013:35478..362431690798002.2977061-UTR-D-dichotoma_M_contig1013:35478..36243Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 35479..36243 +
1622927497.721744-UTR-D-dichotoma_M_contig1013:36882..370741622927497.721744-UTR-D-dichotoma_M_contig1013:36882..37074Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 36883..37074 +
1690798002.3245049-UTR-D-dichotoma_M_contig1013:36882..370741690798002.3245049-UTR-D-dichotoma_M_contig1013:36882..37074Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1013 36883..37074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.707094-CDS-D-dichotoma_M_contig1013:36243..368821622927497.707094-CDS-D-dichotoma_M_contig1013:36243..36882Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1013 36244..36882 +
1690798002.3084521-CDS-D-dichotoma_M_contig1013:36243..368821690798002.3084521-CDS-D-dichotoma_M_contig1013:36243..36882Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1013 36244..36882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1013.199.1

>prot_D-dichotoma_M_contig1013.199.1 ID=prot_D-dichotoma_M_contig1013.199.1|Name=mRNA_D-dichotoma_M_contig1013.199.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=213bp
MKCMTRGKKHVEYDVPCKRGAFANALKGPTVAEVGLLLSRQLRRIGLKIF
LPAQRSGSRTHDAGYMPFTPPYCPDFQPIELFWGDAKNSVSSTYPGEDKG
RTMLKVFMSLRRGWYGGDSVDGREPKAPIYFKALVRHSITKVNEAIARDE
VLSGSVEDGLDNIPPYKVSRDAGLEALETGDDIGLLAVDVEDQGDLEEAE
NSPEAMFNALEM*
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mRNA from alignment at D-dichotoma_M_contig1013:33675..37074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1013.199.1 ID=mRNA_D-dichotoma_M_contig1013.199.1|Name=mRNA_D-dichotoma_M_contig1013.199.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3400bp|location=Sequence derived from alignment at D-dichotoma_M_contig1013:33675..37074+ (Dictyota dichotoma ODC1387m male)
ATAGGCTTTGGTAGGCTGATAATCTACTATACTATACAGCAGTTCAGCAT
CAAATGGTATACGGACTGTGTAAGAGCATGCTGTGGTCTGAAATCCAGTT
GGACACTGTATCTCCAGTTCCTTGCCCTGTCTTTGTTCTGTTCTTTCTCG
AGAGCCATGCCTCGCAAGAGTAAGGGAGCTCTACAGTACCAAAAGCAGCC
GCAAGGCTGGTGGAATCCAATGAAACGAGACACCGTAACCGCTTGATGAG
GGAAGAGAGGGAACAGAGAAAAGAGGGGCCTAAAGCACGCGGAAGGCTTT
CTAAGCAAGTGAAGAGGGAGCTCAAGCGGGTAAAAAGAGAAATCATTTCG
TACGGCCAGGTAGGACGCAGCGTCGAGAAGAGTTCTTCACCGACTAACCC
ACCTGATGAATCGAAGTTATTGCACTGTGTTGTTTTGGAAGCCACGCCCT
ATTTCCCGAAAACAGTAATCTGCTTCGTCGCGTTTGGGCCCGAGCTACAT
TTTGCGGACGAGATTACTGTAGGGTGTTGTACACTAGTACACTCATGGCA
TATATCCAATTCGTCTCATTGAGTTCACATTAACATCCTTGCGTACGCAA
TCCGAAGCCAACGACTTCGAGCTTTGCGACTGGAGGCTGAGAGCAGGAAA
CTTGCACTGTACATCAGATTAAAAAGTATCAGATTTACAGCGAAACACAG
GCTCACCAGAGTACAGTATTTGCGTCGTCGAAGAAGCCTGCCCTTAGGGT
TTAGGGTTACGTTGGTATGGTAAAACTCACGGTAGATGAAACTGCGGTTC
CAAAGAGAAATTTCTGTACTGTAGCTGTATTCTTGTCAGTAAGACCGGTT
CTTACAAGGCCCAAAAAAACAGTTTTTTTGGGTCTTCGGTAGAACATCAG
CCAACGAAACTCAAACATTTGGTTACCTTTCACGAAGAGCTTGAATTTCG
TTGGTTGATGTTCTACCGACAGACCCCAAAATACTGTTTTTTGGAGCCTT
ATAAGAAGGGGCCTAAGGGCTATTCAAAGGCCCGAGCTACATTTTCCGGG
CGAGATTAGGCCCCTTTTTATAAGGCCCCAAAAAACAGTTTTTTGGGGTC
TGTCGGTAGAACATCAACCAACAAAATTCAAGCTCGTCGTGAAAGGTAAC
CAAATACTTGAGTTTCGTTGGCTGATGTTCTACCGAAGACCCCAAAAAAC
TGTTTTTTGGGTCTTATAAGAACCGGTCTTACTGTAGGGTGTTGTGCACT
AGTACACTCATGGCATATATCCAATGCGTCTCATTGAGTTCACATGAAAA
TCCTTGCGTACGCAATCCGAAGCCAACGACTTCGAGCTTTGCGACTGGAG
GTTGAGAGCAGGAAACTTGCCCTGTACATCAGATTTAAAAATATCAGATT
TACAGTGAAACACAGGCTCATTAGAGTACAGTATTTGGGTCGTCGAAGAA
GCGCGCCCTTAGGGATTAGGGTTACGTTAGTATGGTAAAACTCACGCTAG
ATGAAACTGCCGGTTCCAAAGAGAAATTTCTGTACTGTAGCTGTAGTCTT
GTCAGTAAGGGCTATTGTAGGCCCTTCCTTTCACTATGTGTGGCTGAAAT
GACTCCTCGATGCAGCAAGGTGAAGTGCCCTACAGTATTTCAGCCTCTCT
TTGAAATCGCCGTTATCGATGTCGCCAGTGCGCCCACTACGTACATCCTG
TTCTTGAAACAGTACATTCTGTACCGTGCTGACATAAATTCTTCATCCCA
ATCACTTCAGTATAACCAAAAGCTATCCTCCTTGCTTGCCATAAATTACC
GCAGATGAGGCTGGTGCTGCTCCTTTACTTTCACCTCGTGTTGAAGAAGA
AACTAAAAAATGGCGATGCTCTGACATTCGTAAGCGAGGCGCTCGGGATC
GGGAAATCTACCATCAGGGACGCAAGAGGAGTTTGTAGAGCATGGGACGG
TACGTACGGGGGATCGTTCGAAACGTGGACTTAGGCGTGGACCCAAGACC
CCACCAGGCCCGATCCTTCTTCTGAAAGAAAAGGTGGAGGAAATGAACAA
AGCGGGCCGCCAGGTAACGGTAACTGGGCTGCAGACTTGGCTTGCTAGTG
CTCCGTGTGAGAATGAAACTAGGATCCCAATCCAAGTCAGCAACAGGACC
GTTCGCAACTGGCTTGGTAACGTTGGCTTTCATAGAGCGAAGGGGAAGCC
TGGTTACACGGTGACAGAAGAAAGGCCCGCATACGCGAATACCTGATCGA
CTTCACAAATGCGTATAAACTCGACCTCGACGATAACTCCCCGTATAAGA
TGGTGTACATGGACGAGTCGTATCTCCACGGGAACCACAGGAATGACTTT
TCTTGGCTCGAGGTCGACGGAGACTATCGGTCCACGAATAAAAAAGGGGC
GTGGGCAACGGATACTCATTGTCCATGCCATGACGAAGGACGGTCCAGTG
ATTGCTGACGAGTGGCGCAAGGGTGGGAGAAGGGAATGATTTCCCAAGGC
AGAAGGGTGGTCTGCAGCAGGGGATGGACGGCGTGGTTCAAAGAAGGGCA
AGGGTCTTTCTAAGGATTCATGAAGTGTATGACCCGCGGCAAGAAGCACG
TCGAGTACGATGTACCGTGTAAGCGTGGTGCATTCGCCAACGCTCTGAAA
GGGCCCACGGTTGCTGAGGTCGGCTTGCTGCTTTCAAGGCAGTTAAGGAG
AATCGGCCTGAAGATATTCTTACCCGCGCAGAGAAGTGGTTCAAGGACCC
ATGATGCAGGATACATGCCGTTCACACCACCGTACTGTCCTGACTTCCAG
CCCATCGAGCTCTTCTGGGGTGATGCCAAAAACTCCGTTTCAAGCACCTA
CCCAGGAGAGGATAAAGGTCGAACGATGCTAAAGGTGTTCATGTCCTTGC
GTCGAGGATGGTACGGAGGAGACTCAGTCGATGGCCGTGAGCCAAAGGCG
CCCATATATTTTAAAGCATTGGTGCGACATAGCATAACGAAAGTGAATGA
GGCCATCGCAAGAGACGAGGTCTTAAGTGGCTCCGTAGAAGATGGACTGG
ATAACATTCCTCCTTACAAAGTTTCTCGAGACGCAGGGTTGGAGGCTCTA
GAGACAGGCGATGATATTGGGTTGCTTGCGGTTGATGTTGAGGACCAGGG
TGACCTTGAGGAAGCCGAAAACTCTCCGGAGGCAATGTTCAATGCTCTAG
AGATGTGATGAAGATGCAAAGGACATGGAAACCGCTCTGGCGACGCGGGG
AGAAGAGTAGCTTCGGTACCTTGGACTTCGTCGTCTTCGTCCCTCGGTCT
CCATTGTGAGGTCCACTCGTAAGAATATTACAGTATATAAGTGTTGCAAA
TGTCGGCTCATCTCCGGACATGTGCCAAAATATCAAATGCTGTACCCGGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1013:33675..37074+

>mRNA_D-dichotoma_M_contig1013.199.1 ID=mRNA_D-dichotoma_M_contig1013.199.1|Name=mRNA_D-dichotoma_M_contig1013.199.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1278bp|location=Sequence derived from alignment at D-dichotoma_M_contig1013:33675..37074+ (Dictyota dichotoma ODC1387m male)
ATGAAGTGTATGACCCGCGGCAAGAAGCACGTCGAGTACGATGTACCGTG
TAAGCGTGGTGCATTCGCCAACGCTCTGAAAGGGCCCACGGTTGCTGAGG
TCGGCTTGCTGCTTTCAAGGCAGTTAAGGAGAATCGGCCTGAAGATATTC
TTACCCGCGCAGAGAAGTGGTTCAAGGACCCATGATGCAGGATACATGCC
GTTCACACCACCGTACTGTCCTGACTTCCAGCCCATCGAGCTCTTCTGGG
GTGATGCCAAAAACTCCGTTTCAAGCACCTACCCAGGAGAGGATAAAGGT
CGAACGATGCTAAAGGTGTTCATGTCCTTGCGTCGAGGATGGTACGGAGG
AGACTCAGTCGATGGCCGTGAGCCAAAGGCGCCCATATATTTTAAAGCAT
TGGTGCGACATAGCATAACGAAAGTGAATGAGGCCATCGCAAGAGACGAG
GTCTTAAGTGGCTCCGTAGAAGATGGACTGGATAACATTCCTCCTTACAA
AGTTTCTCGAGACGCAGGGTTGGAGGCTCTAGAGACAGGCGATGATATTG
GGTTGCTTGCGGTTGATGTTGAGGACCAGGGTGACCTTGAGGAAGCCGAA
AACTCTCCGGAGGCAATGTTCAATGCTCTAGAGATGTGAATGAAGTGTAT
GACCCGCGGCAAGAAGCACGTCGAGTACGATGTACCGTGTAAGCGTGGTG
CATTCGCCAACGCTCTGAAAGGGCCCACGGTTGCTGAGGTCGGCTTGCTG
CTTTCAAGGCAGTTAAGGAGAATCGGCCTGAAGATATTCTTACCCGCGCA
GAGAAGTGGTTCAAGGACCCATGATGCAGGATACATGCCGTTCACACCAC
CGTACTGTCCTGACTTCCAGCCCATCGAGCTCTTCTGGGGTGATGCCAAA
AACTCCGTTTCAAGCACCTACCCAGGAGAGGATAAAGGTCGAACGATGCT
AAAGGTGTTCATGTCCTTGCGTCGAGGATGGTACGGAGGAGACTCAGTCG
ATGGCCGTGAGCCAAAGGCGCCCATATATTTTAAAGCATTGGTGCGACAT
AGCATAACGAAAGTGAATGAGGCCATCGCAAGAGACGAGGTCTTAAGTGG
CTCCGTAGAAGATGGACTGGATAACATTCCTCCTTACAAAGTTTCTCGAG
ACGCAGGGTTGGAGGCTCTAGAGACAGGCGATGATATTGGGTTGCTTGCG
GTTGATGTTGAGGACCAGGGTGACCTTGAGGAAGCCGAAAACTCTCCGGA
GGCAATGTTCAATGCTCTAGAGATGTGA
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