mRNA_D-dichotoma_M_contig1012.196.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1012.196.1
Unique NamemRNA_D-dichotoma_M_contig1012.196.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 1.280e-126
Identity = 182/263 (69.20%), Postives = 207/263 (78.71%), Query Frame = 1
Query:    1 RQVSDQLKAIGLDYSSSTVRRWFAAEGAHKVVRRIKPSLSDAQKKRRIDFICDQVDETAGDYLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRPDPSHDFDGKIGIWCICVMKTAERSSKK-------------------RKRG----EEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLK 720
            RQVSDQL  +GL++   TVRRWF+  GA K   RIKPSLSDAQK+ R+DFI D+VDE  G+YLD GNV+HLDESWF+L+R+KEKVR+F GE++PG PRV H+S LPK MVIVAN RPDP+HDFDGKIGIW ICV++TA+RSSKK                   R R     EEYE DCTIDAEWYK WYID LLPAIK+KMPWLRSKRVVVQQDG SPHTGK NPEIL+ AG+ RGW+VELVTQPAQSPDLN+NDLG FASLK
Sbjct:   87 RQVSDQLTDLGLEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLK 349          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A6G0X1B6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1B6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.570e-37
Identity = 86/238 (36.13%), Postives = 128/238 (53.78%), Query Frame = 1
Query:   43 SSSTVRRWFAAEGAHKVVRRIKPSLSDAQKKRRIDFICDQVDETAG-------DYLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRP--DPSHD--FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            S+ T+ R+       +   R+KP L+D  K++R+ F C  VD +A        D+ DM +V+HLDE WF   +D+ KV +   +E P   R + K  +PK M + A  RP  D +    FDGKIG+W   V   A R S+ R  G      C + AE Y+ + +++++PA+K +MP   SK VV+Q D  +PH   ++  +        GW   +  QP  SPDLNV DLGFFAS+++
Sbjct:    8 STGTLARYLKLGTLQRKSSRLKPLLNDQNKRQRLWFCCSHVDRSAHAGAQQEFDFFDMFDVVHLDEKWFNADKDRRKVYLTK-DEAPEVRRCKSKRFIPKVMFLAAVARPRWDNARSCFFDGKIGMWPFVVQVPAARGSRNRPAGTMVTKVCNVTAEAYRDFVVNKVIPAVKSEMP-STSKCVVLQHDNATPHRSVDDAVLS--PCCTDGWTFRVSCQPPNSPDLNVLDLGFFASIQA 241          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.920e-37
Identity = 74/215 (34.42%), Postives = 125/215 (58.14%), Query Frame = 1
Query:  100 RIKPSLSDAQKKRRIDFICDQVDETAGD---YLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRP--DPSHD--FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            R+KP L+D  K  R+ F+   +   A     + DM + +H+DE WF++ +   +  ++  E +P + + + K  + K M + A  RP  D  +   +DG+IG+W     + A RSSK RKRG++     T+  + Y+++ ID+++PA++ K P  +  ++ +QQD   PH   N+P ++  AG   GW + L +QPAQSPDLNV DLG+F +++S
Sbjct:    7 RLKPMLTDKHKSDRMAFVQRHLRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLWSDEAVP-TRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVVA-AGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQS 219          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A6G0WM27_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM27_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.110e-36
Identity = 87/248 (35.08%), Postives = 131/248 (52.82%), Query Frame = 1
Query:    1 RQVSDQLKAIGLDYSSSTVRRWFAAEGAHK-VVRRIKPSLSDAQKKRRIDFICDQVDETAGDYLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRPDPSHD------FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            RQ S  L A       +T+ R    EG  K    R++P L++   K R++F    V E   +++DM NV+H+DE WF L +   K  ++  EE+P     + K+ + K M + A  RP   HD      FDGK+G+W   + + A+R+SK R R     +  ++ +E Y    +  +LPAIK+KM ++++ ++ +QQD   PH+   N       G   GW V L  QPA SPD NV DLGFF S++S
Sbjct:  112 RQTSRSL-AHNSGIPKTTIFRHMKKEGRLKRASSRLRPLLTEVNMKARLEFAMSFVKEDR-EFVDMHNVVHVDEKWFDLTKVNGKFYVYDDEELPLR-ATKSKNFITKVMFLAAVARP--RHDEATNQFFDGKLGMWPFVIQEPAKRTSKNRARDTLISTPISVTSEVYFDMLVSNVLPAIKRKMSFMKNSKIFIQQDNAGPHSKSVNHRFNQ-VGSYDGWNVALKNQPANSPDFNVLDLGFFNSIQS 353          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A6A4ECW5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ECW5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.720e-35
Identity = 92/249 (36.95%), Postives = 131/249 (52.61%), Query Frame = 1
Query:    1 RQVSDQLKAIGLDYSSSTVRRWFAAEGAHKVVRRIKPSLSDAQKKRRIDFICDQV--DETAGDYLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRPDPSHD----FDGKIGIWCICVMKTAERSSKKRKRGE-EYESDCTIDAEWYKTWYIDQLLPAIKKKMP-WLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            R+V+ Q  A  L    S VR         +    I P L+ A K  RI      V        ++ M NV+H+DE WF   +DK+   + PGE +P   R + K  + K M + A  RP   ++    FDGKIGIW       A+ SSK R  G  E ++  T++ E YK + ++ ++PAIK K P W +S  +V+QQD  +PH    +P+IL  AG+  GW + L  QPA SPDLN  DLG+FAS+++
Sbjct:  125 RRVTQQCLAQELGVGRSVVRDALKQGLLVRHSSTIHPLLTLANKHARIRHAIRHVMHGPNGSYFVPMYNVVHVDEKWFNEDKDKKVFYLLPGETVPHRER-KSKRFIGKTMFLAAVARPRFDNNGQVLFDGKIGIWDFTHKVDAQHSSKNRPAGTLETKNLDTVNREVYKRYLLEHIIPAIKSKWPVWDKSSPIVIQQDNATPHCQPTDPDILA-AGVADGWNIRLAFQPANSPDLNTLDLGYFASIQA 371          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: UPI0019D4F374 (uncharacterized protein LOC120667773 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D4F374)

HSP 1 Score: 139 bits (350), Expect = 9.380e-35
Identity = 81/243 (33.33%), Postives = 130/243 (53.50%), Query Frame = 1
Query:   25 AIGLDYSSSTVRRWFAAEGAHKVVRRIKPSLSDAQKKRRIDFICDQVDETA-GD----YLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRPDPSHD----FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRS-KRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            A  LD   ST+ R F      +    +KP L ++ K+ R+ F    +D+T+ GD    ++DM N++H+DE W+++ +   K  + P E+ P    +Q+K+++ K M++   GRP  +      F GKIG+W       A R SKKR+RG        ++ E  + + I++++PAIK K P   + + + +QQD    H   N+P  L  A    G  + L+ QP  SPD+NV DLGFF S++S
Sbjct:  179 AKSLDVGISTLHRKFKLGLLRRHSNTLKPHLKESNKRERLQFCISMLDQTSLGDAEPRFIDMQNILHMDEKWYYMTKKARKYYLLPEEDDPER-TIQNKNNIGKVMLLTVVGRPRRNAQGIVMFSGKIGVWAFVKEVPAARRSKKRERGTLETKSVIVNREVMRQFLIEKVIPAIKSKWPQDAALETIFIQQDNARTHVSPNDPAFLQ-AVAATGLDIGLMQQPPNSPDMNVLDLGFFRSIQS 419          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.580e-34
Identity = 93/246 (37.80%), Postives = 136/246 (55.28%), Query Frame = 1
Query:   28 IGLDYSSSTVRRWFAAEGAHKVVRRIKPSLSDAQKKRRI----DFICDQVDET------AGDYLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRPDPSHD----FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            +GL Y+  T+ R   A    +    + PSL+DA K +R+     F+  ++ +T      A  +  M + IHLDE WFFL +DK    +  GEE+P S   +HKS +PK M + A GRP   H     FDGK+GI+   +  TA+RSS+ + +G       T+  + Y    ++ +LPAI  K P  R K + +QQDG  PH     PE++  A    G  ++LVTQPA SPDLN+ DLGFFA++++
Sbjct:   88 VGLPYT--TLFRKLKAGVIRRATSTLSPSLTDACKYKRLLHCLSFL--RLSKTTRSCPAAFKFHAMLDWIHLDEKWFFLDKDKRTFYLVKGEELP-SRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFP-SRWKTLYIQQDGARPHCTDGCPELVASAA-SFGLNIKLVTQPANSPDLNILDLGFFAAIQT 326          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A485KSH5_9STRA (Aste57867_11065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSH5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.170e-34
Identity = 91/262 (34.73%), Postives = 129/262 (49.24%), Query Frame = 1
Query:    1 RQVSDQLKAIGLDYSSST------VRRWFAAEGAHKVVRRIKPSLSDAQKKRRIDFICDQVDETAGD-----------YLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRP----DPSHDFDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            ++V ++ ++   D S +T      + R        +   R+KP LSD  K  RI F    V   A D           + DM + +HLDE WF    D+ KV + PGEE P     + K  LPK M +     P    +   +FDGKIG+W I     A R+S+ R  G        IDA  Y  + +++++PAIK+K P   +KRVV+Q D  +PH+      +   +    GW   +  QPAQSPDLNV DLGFFAS++S
Sbjct:   88 QEVPEEQRSTMRDISEATGLSVGMIHRNLKTGAIERQSTRLKPLLSDEHKLERITFCKSYVRREAPDTIALLAGQEFEFFDMWDAVHLDEKWFNADIDRRKVYLVPGEE-PKRRACKFKRFLPKVMFLAVVAHPRFNIEGECEFDGKIGLWPIVKYAPAIRNSRNRAAGTIEAKSINIDAVVYLDFVVNKVIPAIKRKFP-SSNKRVVLQHDNATPHSSVTTASLSRVST--DGWKFVVKCQPAQSPDLNVLDLGFFASIQS 345          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: W4GF08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GF08_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.370e-34
Identity = 75/232 (32.33%), Postives = 131/232 (56.47%), Query Frame = 1
Query:   49 STVRRWFAAEGAHKVVRRIKPSLSDAQKKRRIDFICDQV-DETAGD--YLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRP--DPSHD--FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            +T+ R   ++   +   R+KP  +D  K  R+ F+   +  E +G   + DM + +H+DE WF++ +   +  ++  + +P + + + K D+ K M + A  RP  D  +   +DG+IG+      + A RSSK RKRG++     T+  + Y ++ ID+++PA++ K P     ++ +QQD   PH   N+P ++  AG   GW + L +QPAQSPDLNV DLG+F +++S
Sbjct:  115 TTLWRLLQSKVMKRCTSRLKPMQTDKHKSDRMAFVQRHLRTEASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLWSDKAVP-TRKCRSKMDIMKVMFLTAVARPRYDARNKRMWDGRIGMRPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYPSFLIDKVIPAVRSKWPSSMKNQIWIQQDNAKPHVSVNDPAVIA-AGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQS 344          
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.330e-33
Identity = 83/227 (36.56%), Postives = 123/227 (54.19%), Query Frame = 1
Query:   85 HKVVRR---------IKPSLSDAQKKRRIDFICDQVDETAGDYLDMGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVANGRP--DPSHD--FDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSK-RVVVQQDGVSPHTGKNNPEILH*AGMGRGWMVELVTQPAQSPDLNVNDLGFFASLKS 723
            H++VRR          KP L+   K +R+++I + +D+  G + D    IH+DE WF+L R K+   + PGE  P S   + K+ + K M + A  RP  D ++   FDGKIGIW   V + A+RSS  R +G        +D E YK   ++++LPAI +K P   S   + +Q+D   PH      E+   A   +GW + + TQP  SPD+NV DLGFF S++S
Sbjct:  218 HRLVRRGDMRKHNGTTKPLLTAKNKLKRVEWILEHIDDN-GRFDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTS-KSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPHKATIREEVKA-AAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQS 441          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1012.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.280e-12669.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0X1B6_9STRA3.570e-3736.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4Z9D8_9STRA4.920e-3734.42Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WM27_9STRA2.110e-3635.08Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A6A4ECW5_9STRA2.720e-3536.95Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
UPI0019D4F3749.380e-3533.33uncharacterized protein LOC120667773 n=1 Tax=Panic... [more]
A0A6G0X8U9_9STRA1.580e-3437.80Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KSH5_9STRA5.170e-3434.73Aste57867_11065 protein n=1 Tax=Aphanomyces stella... [more]
W4GF08_9STRA5.370e-3432.33Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A448ZNT1_9STRA3.330e-3336.56Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1012contigD-dichotoma_M_contig1012:214009..214731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue7.3e-18
Seed eggNOG ortholog42099.EPrPV00000024293
EggNOG free text desc.Source PGD
EggNOG OGs1MJMG@121069,2CMKC@1,2QQNW@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1012.196.1prot_D-dichotoma_M_contig1012.196.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1012 214201..214629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.1401114-UTR-D-dichotoma_M_contig1012:214008..2142001622927497.1401114-UTR-D-dichotoma_M_contig1012:214008..214200Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1012 214009..214200 +
1690798002.0979075-UTR-D-dichotoma_M_contig1012:214008..2142001690798002.0979075-UTR-D-dichotoma_M_contig1012:214008..214200Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1012 214009..214200 +
1622927497.1615646-UTR-D-dichotoma_M_contig1012:214629..2147311622927497.1615646-UTR-D-dichotoma_M_contig1012:214629..214731Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1012 214630..214731 +
1690798002.123654-UTR-D-dichotoma_M_contig1012:214629..2147311690798002.123654-UTR-D-dichotoma_M_contig1012:214629..214731Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1012 214630..214731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.1514082-CDS-D-dichotoma_M_contig1012:214200..2146291622927497.1514082-CDS-D-dichotoma_M_contig1012:214200..214629Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1012 214201..214629 +
1690798002.1085477-CDS-D-dichotoma_M_contig1012:214200..2146291690798002.1085477-CDS-D-dichotoma_M_contig1012:214200..214629Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1012 214201..214629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1012.196.1

>prot_D-dichotoma_M_contig1012.196.1 ID=prot_D-dichotoma_M_contig1012.196.1|Name=mRNA_D-dichotoma_M_contig1012.196.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=143bp
MGNVIHLDESWFFLLRDKEKVRMFPGEEIPGSPRVQHKSDLPKKMVIVAN
GRPDPSHDFDGKIGIWCICVMKTAERSSKKRKRGEEYESDCTIDAEWYKT
WYIDQLLPAIKKKMPWLRSKRVVVQQDGVSPHTGKNNPEILH*
back to top

mRNA from alignment at D-dichotoma_M_contig1012:214009..214731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1012.196.1 ID=mRNA_D-dichotoma_M_contig1012.196.1|Name=mRNA_D-dichotoma_M_contig1012.196.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=723bp|location=Sequence derived from alignment at D-dichotoma_M_contig1012:214009..214731+ (Dictyota dichotoma ODC1387m male)
AGGCAAGTGTCCGATCAGCTCAAAGCGATCGGGCTTGACTACAGCTCATC GACGGTGAGAAGGTGGTTTGCCGCTGAGGGGGCGCACAAGGTGGTTCGCC GCATAAAGCCGTCGCTTTCTGATGCCCAGAAGAAGCGCCGGATCGATTTC ATCTGCGATCAGGTGGACGAGACGGCCGGGGACTACCTCGACATGGGAAA TGTCATCCACCTGGACGAAAGCTGGTTTTTCCTTTTGAGGGACAAGGAGA AGGTTCGAATGTTCCCAGGCGAGGAAATCCCCGGGTCTCCCCGCGTTCAA CACAAGAGCGACCTTCCGAAGAAAATGGTGATCGTGGCAAACGGTCGGCC GGACCCAAGCCACGACTTCGACGGCAAGATCGGCATCTGGTGCATTTGTG TCATGAAAACCGCCGAGCGATCGTCCAAGAAGCGGAAGAGGGGGGAGGAG TACGAGTCCGACTGCACCATCGACGCGGAGTGGTACAAGACGTGGTACAT TGACCAACTCCTGCCTGCGATCAAGAAAAAGATGCCGTGGCTGCGTTCAA AGCGCGTAGTAGTGCAGCAGGACGGCGTGAGCCCCCACACGGGAAAAAAC AATCCAGAGATTCTTCACTAAGCGGGGATGGGGCGGGGTTGGATGGTAGA GCTTGTCACGCAGCCTGCCCAGTCGCCTGACTTGAACGTCAACGACTTGG GCTTCTTCGCATCTCTAAAGTCA
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1012:214009..214731+

>mRNA_D-dichotoma_M_contig1012.196.1 ID=mRNA_D-dichotoma_M_contig1012.196.1|Name=mRNA_D-dichotoma_M_contig1012.196.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=858bp|location=Sequence derived from alignment at D-dichotoma_M_contig1012:214009..214731+ (Dictyota dichotoma ODC1387m male)
ATGGGAAATGTCATCCACCTGGACGAAAGCTGGTTTTTCCTTTTGAGGGA
CAAGGAGAAGGTTCGAATGTTCCCAGGCGAGGAAATCCCCGGGTCTCCCC
GCGTTCAACACAAGAGCGACCTTCCGAAGAAAATGGTGATCGTGGCAAAC
GGTCGGCCGGACCCAAGCCACGACTTCGACGGCAAGATCGGCATCTGGTG
CATTTGTGTCATGAAAACCGCCGAGCGATCGTCCAAGAAGCGGAAGAGGG
GGGAGGAGTACGAGTCCGACTGCACCATCGACGCGGAGTGGTACAAGACG
TGGTACATTGACCAACTCCTGCCTGCGATCAAGAAAAAGATGCCGTGGCT
GCGTTCAAAGCGCGTAGTAGTGCAGCAGGACGGCGTGAGCCCCCACACGG
GAAAAAACAATCCAGAGATTCTTCACTAAATGGGAAATGTCATCCACCTG
GACGAAAGCTGGTTTTTCCTTTTGAGGGACAAGGAGAAGGTTCGAATGTT
CCCAGGCGAGGAAATCCCCGGGTCTCCCCGCGTTCAACACAAGAGCGACC
TTCCGAAGAAAATGGTGATCGTGGCAAACGGTCGGCCGGACCCAAGCCAC
GACTTCGACGGCAAGATCGGCATCTGGTGCATTTGTGTCATGAAAACCGC
CGAGCGATCGTCCAAGAAGCGGAAGAGGGGGGAGGAGTACGAGTCCGACT
GCACCATCGACGCGGAGTGGTACAAGACGTGGTACATTGACCAACTCCTG
CCTGCGATCAAGAAAAAGATGCCGTGGCTGCGTTCAAAGCGCGTAGTAGT
GCAGCAGGACGGCGTGAGCCCCCACACGGGAAAAAACAATCCAGAGATTC
TTCACTAA
back to top