mRNA_D-dichotoma_M_contig1012.189.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1012.189.1
Unique NamemRNA_D-dichotoma_M_contig1012.189.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1012.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1012contigD-dichotoma_M_contig1012:11923..13954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1012.189.1prot_D-dichotoma_M_contig1012.189.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1012 12030..13954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927495.6641471-UTR-D-dichotoma_M_contig1012:11922..120291622927495.6641471-UTR-D-dichotoma_M_contig1012:11922..12029Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1012 11923..12029 +
1690798000.738635-UTR-D-dichotoma_M_contig1012:11922..120291690798000.738635-UTR-D-dichotoma_M_contig1012:11922..12029Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1012 11923..12029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927495.6750576-CDS-D-dichotoma_M_contig1012:12029..122631622927495.6750576-CDS-D-dichotoma_M_contig1012:12029..12263Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1012 12030..12263 +
1690798000.749998-CDS-D-dichotoma_M_contig1012:12029..122631690798000.749998-CDS-D-dichotoma_M_contig1012:12029..12263Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1012 12030..12263 +
1622927495.6859548-CDS-D-dichotoma_M_contig1012:13909..139541622927495.6859548-CDS-D-dichotoma_M_contig1012:13909..13954Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1012 13910..13954 +
1690798000.7960212-CDS-D-dichotoma_M_contig1012:13909..139541690798000.7960212-CDS-D-dichotoma_M_contig1012:13909..13954Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1012 13910..13954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1012.189.1

>prot_D-dichotoma_M_contig1012.189.1 ID=prot_D-dichotoma_M_contig1012.189.1|Name=mRNA_D-dichotoma_M_contig1012.189.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=93bp
MPGHAMDVSEMTGQEGRGFLGEFLSRFADAAQGRNETAISTGSDGGSSLV
IDASRETNRLLVKTAGDVFFHCSAQLAQFAHETQGIDVGGRNT
back to top

mRNA from alignment at D-dichotoma_M_contig1012:11923..13954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1012.189.1 ID=mRNA_D-dichotoma_M_contig1012.189.1|Name=mRNA_D-dichotoma_M_contig1012.189.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2032bp|location=Sequence derived from alignment at D-dichotoma_M_contig1012:11923..13954+ (Dictyota dichotoma ODC1387m male)
AGAGACTTGGTAGATATCTCCGCTCCAGTAAGTGCGACATCCGCGCGCAC
CGCCCCCGGCAAGGGGGCGGTCAAGGTTTTCGATAAATATCTGAATCCGT
CGAGAGCATGCCGGGGCATGCGATGGATGTGTCCGAGATGACAGGGCAAG
AGGGACGTGGCTTTTTGGGCGAGTTCCTATCGCGTTTCGCGGATGCCGCG
CAAGGTCGGAATGAGACAGCAATCAGCACTGGGTCTGATGGAGGGTCATC
TCTGGTCATCGACGCAAGTCGCGAAACCAATAGACTGCTCGTGAAGACAG
CAGGGGATGTGTTCTTCCACTGCTCTGCGCAGCTGGCGCAGGTGCGTCTT
AAATTATAGATGTATGAGGCGTGCGTTCTCTTACCCGTGAAGGCGAAGTT
ATGTCGTGCTGCGCTCACCTGCCTATACTTTCCTGGATGCCGGGAATTTT
TGGAAGAGCTGCATCATTTGTGTCCGCAGCCCTATACACCGCATGTCTGT
TATAACTAGAATATGTCTTTGAGATAGTCATCCCCTCGCCTGACCTGAGG
AAAGCATTTTCGCGAGGAGGGCTTGACCAGGCACACCTGGAGTACCGCAA
GATTGTCGCGTTGTGGTCATCCTTTACTTAAACATAACAACCGTATGGAG
CGACTACAGTTAGGTGCGGTACTTCGGAGTTGTCGGAGATCATGCTGACT
GTACTCTTGCCACAGTGTTCAAGTGGAAGATAAATTGATACTTCCTCGAG
GACCTCCTAGACCTTTATGACGAATGCCCAGACCAAACTCATATTCCAGG
TTCCATCTCGCATTCGCGAGAGATCGCAAACAGTGAGGTATGATAAGATA
CGACTCGTCGTACTGAGGTGCCCCGGAGATCCCCACACGACTTCACCTTT
TGGAATGTATTAACCTTGGGCTCCGCTCCTACCCGTGATCCTACTGGTTG
GTTGCTGAAAAGCTGTGGTATGTGATGGGGAACACTTGACTGCTTCGAAG
ATTACCCTTTTCTTTCATCGTCCGTTAGCATTCGCATGGGGGACGCCCCA
AGCTGTTCAGTCCAAGCACCAAGTCCGGGACATATTACCAACTCGTATTG
GACTTTGTCCTTTTTCATTTTGGAGTCGTCCATCCAGTGCAATATTTCGC
GAGCGTGCACCAGGAGGGAGAAACTTGAAGCCGGTCATGATACCACCTGG
GGATCATGCGGTATGCGTTCATTGATTACTACTCCGCTCGCCTTACTCAC
TTATTGATAGTCTCAGGAACGTACGGTTTCGAACCCTTGTTTCCCTATAT
ACTGTTTTTGAAAAGGAGTCGATGATTCGGTATCGAGGCGCAAGTTGGAT
GTTAGTCTTTCGTATACACTTGGCCTGAATTGGATTCGAATGTACTGCAC
AGCGTGCGCAGAATGTAATAACACGTTGAGCTTCTCTCTCAAGTAAACTT
TGGCGTATGTCTCCTCACATGCATGCGGGTGGACTTCGTGTCGGGAGGCT
TGCCATGCGGTGTCTCCCCGAGGCTTCTCCTTCGAGGACGAACGAAATGG
ATCCATGTGCACGTTTTGTCTTTCAACCTCTGGATGACTACGGTGGGAGC
TCAAGTCATCAGAGCGATCGGTACCGATTTGGCAAATCATGCCTCTCGAC
CCACCCCGTCATCGATATCCAAGAAGCTCTCTGTTCTGGCACGAGAATCA
GGTCTCGACCTCCGGCCAGGTGCTGCTCATCCATCACCTGCATCCCGCGC
GACTGCTGTACTGTAGTTTCCGATCCAACCTTGAGCCAATTGATGTTTCC
TTGGTGCTGATACAGTATCAGTCAGTGTGTTTTGTCGTCGATTGGAAATG
GGCCGGACTACGCGCGTTTACCTCCGATTGCTTTGAGCCTTCCGTAGCGC
TGGCCCCTGGATTTGATACTGGAAGCCCTTTGCCCTTGCCCTTGCTCGTC
GGCTGCTCTTTGTCCCGTACCCCCCACCCACCCACAGTTTGCTCATGAAA
CACAAGGTATTGATGTGGGCGGGAGAAACACG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1012:11923..13954+

>mRNA_D-dichotoma_M_contig1012.189.1 ID=mRNA_D-dichotoma_M_contig1012.189.1|Name=mRNA_D-dichotoma_M_contig1012.189.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=558bp|location=Sequence derived from alignment at D-dichotoma_M_contig1012:11923..13954+ (Dictyota dichotoma ODC1387m male)
ATGCCGGGGCATGCGATGGATGTGTCCGAGATGACAGGGCAAGAGGGACG
TGGCTTTTTGGGCGAGTTCCTATCGCGTTTCGCGGATGCCGCGCAAGGTC
GGAATGAGACAGCAATCAGCACTGGGTCTGATGGAGGGTCATCTCTGGTC
ATCGACGCAAGTCGCGAAACCAATAGACTGCTCGTGAAGACAGCAGGGGA
TGTGTTCTTCCACTGCTCTGCGCAGCTGGCGCAGATGCCGGGGCATGCGA
TGGATGTGTCCGAGATGACAGGGCAAGAGGGACGTGGCTTTTTGGGCGAG
TTCCTATCGCGTTTCGCGGATGCCGCGCAAGGTCGGAATGAGACAGCAAT
CAGCACTGGGTCTGATGGAGGGTCATCTCTGGTCATCGACGCAAGTCGCG
AAACCAATAGACTGCTCGTGAAGACAGCAGGGGATGTGTTCTTCCACTGC
TCTGCGCAGCTGGCGCAGTTTGCTCATGAAACACAAGGTATTGATGTGGG
CGGGAGAAACACGTTTGCTCATGAAACACAAGGTATTGATGTGGGCGGGA
GAAACACG
back to top