mRNA_D-dichotoma_M_contig1011.188.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1011.188.1
Unique NamemRNA_D-dichotoma_M_contig1011.188.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1011.188.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.020e-7
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:  241 QTACNSIGCPNGLVPIPNADTVVCEEDPCSVDQCCLA 351
            +T CNSIGCP G  PIPNA  V C++DPC V QCC A
Sbjct:    5 KTYCNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1011.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPS1_9PHAE5.020e-764.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1011contigD-dichotoma_M_contig1011:246115..249007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1504
Cds size945
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.8710706-UTR-D-dichotoma_M_contig1011:246114..2465891622927494.8710706-UTR-D-dichotoma_M_contig1011:246114..246589Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1011 246115..246589 -
1690798000.046895-UTR-D-dichotoma_M_contig1011:246114..2465891690798000.046895-UTR-D-dichotoma_M_contig1011:246114..246589Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1011 246115..246589 -
1622927494.8805735-UTR-D-dichotoma_M_contig1011:246729..2467471622927494.8805735-UTR-D-dichotoma_M_contig1011:246729..246747Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1011 246730..246747 -
1690798000.0578427-UTR-D-dichotoma_M_contig1011:246729..2467471690798000.0578427-UTR-D-dichotoma_M_contig1011:246729..246747Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1011 246730..246747 -
1622927494.9259646-UTR-D-dichotoma_M_contig1011:248941..2490071622927494.9259646-UTR-D-dichotoma_M_contig1011:248941..249007Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1011 248942..249007 -
1690798000.110278-UTR-D-dichotoma_M_contig1011:248941..2490071690798000.110278-UTR-D-dichotoma_M_contig1011:248941..249007Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1011 248942..249007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.8892646-CDS-D-dichotoma_M_contig1011:246747..2473051622927494.8892646-CDS-D-dichotoma_M_contig1011:246747..247305Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 246748..247305 -
1690798000.0715764-CDS-D-dichotoma_M_contig1011:246747..2473051690798000.0715764-CDS-D-dichotoma_M_contig1011:246747..247305Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 246748..247305 -
1622927494.8976128-CDS-D-dichotoma_M_contig1011:247650..2478571622927494.8976128-CDS-D-dichotoma_M_contig1011:247650..247857Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 247651..247857 -
1690798000.080779-CDS-D-dichotoma_M_contig1011:247650..2478571690798000.080779-CDS-D-dichotoma_M_contig1011:247650..247857Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 247651..247857 -
1622927494.9064796-CDS-D-dichotoma_M_contig1011:248258..2483351622927494.9064796-CDS-D-dichotoma_M_contig1011:248258..248335Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 248259..248335 -
1690798000.0906558-CDS-D-dichotoma_M_contig1011:248258..2483351690798000.0906558-CDS-D-dichotoma_M_contig1011:248258..248335Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 248259..248335 -
1622927494.917029-CDS-D-dichotoma_M_contig1011:248838..2489411622927494.917029-CDS-D-dichotoma_M_contig1011:248838..248941Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 248839..248941 -
1690798000.1007547-CDS-D-dichotoma_M_contig1011:248838..2489411690798000.1007547-CDS-D-dichotoma_M_contig1011:248838..248941Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1011 248839..248941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1011.188.1prot_D-dichotoma_M_contig1011.188.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1011 246748..248941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1011.188.1

>prot_D-dichotoma_M_contig1011.188.1 ID=prot_D-dichotoma_M_contig1011.188.1|Name=mRNA_D-dichotoma_M_contig1011.188.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=315bp
MVRAATFVSLFFVASPSFEGVLYGSAVPHGIPNNGQGEVNAMELGGNTGE
KGNLRRNLQTACNSIGCPNGLVPIPNADTVVCEEDPCSVDQCCLAFCNSI
GCPNGLIPIPNANTVLCEEDPCSTNQCCEAYCSSFPCPNGLTPIPFASST
LCPGNDCTQDECCEALCSGFPCPDSFVPVENANTIVCPGQDCTVGLCCID
WTAETTDSNVYCNSIGCPNGLIPITNANLVPCTGNICTTDQCCEAFCSSF
PCPNGLTPIPSASSTLCPGNDCTQEECCEALCSGFPCPNGLVPVVNANTI
VCPSQVCTEFLCCM*
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mRNA from alignment at D-dichotoma_M_contig1011:246115..249007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1011.188.1 ID=mRNA_D-dichotoma_M_contig1011.188.1|Name=mRNA_D-dichotoma_M_contig1011.188.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2893bp|location=Sequence derived from alignment at D-dichotoma_M_contig1011:246115..249007- (Dictyota dichotoma ODC1387m male)
CATCAACCGAAGCACCCACCCTCTCTCAGTCTACCTCCCAGTCCTACACC
CATCTTCGTAGCTACAATGGTTCGTGCGGCGACTTTCGTGTCCCTCTTCT
TCGTTGCCAGCCCATCATTTGAGGGCGTTCTGTACGGCTCGGCCGTACCG
CACGGCATCCCCAACAATGGTGAGATTCTTCTCGCTTTCTGCCATGCTTG
CGCTGCACTTCATGGATTAGACCATCCACCTAAGTTGCAGCGAATGAAGC
CTACTGTAGCTGATGGCGTAGTGTAAATCTCACATGAACGCTTTGAAATG
GTGCTGATAACTGACCTGTGTTCACCCCGCATAAATGTATGTCGCATACC
AGTGCCCGCTGATGCAAATGCATGGCTTTGGGGGTGATGACATCTTGACT
ATATACCGTAGATAGCATCTTGGTGAGCGGCGGAATTCACGACTGCGGAT
CTCGGTTAGGCTCGTACATGATGCTGGGCAGTATGCACCCCAGCACAAAG
CTGGATTTTTCTGTTATGTAGGGTCACGTGTCGTCAAACCTAGAGGGCGC
GTCTGCTTGAGTACGAGTTGAACCCCGGGTTGTATCATTTCCCATGATCT
TGTTTCTCCGCTAAAGCTGAACGGAAGTTGATTTTTCTTTCAACATGCCG
AAACCTATCATGCATCGAGCAGGCCAAGGCGAGGTCAACGCAATGGAACT
TGGTGGCAATACTGGGGAGAAGGGCAACTTAAGACGCAATCTTCAAACGG
TGAGAAACGACGTCGTAAAAAGAGTTTCTGTGTCCAAGAGAGGTTTGGCG
GACAGAATTCTGTAACCGGCGCATGAGCCGATCATCTGCACATGATAACC
CACGTGAAGCGCCCGTGACAGACAGGATACTGTATATGGCATGGGTATCT
CAAGCAGTTGGCTAGAACGGAGTGCTCTATCTCGAGTACCCCTCAGGTGG
AAGCGTTTCCTCCCGTGGGTAGTTTCCTCATCTTTACCCCATGTGGTGCC
AATGCCCGTGAAGGCAGGTCTTGAATTGGCGATGCCGCGAGATGTCTCAA
CTCTGGAAAGCAATTATCATATTGTCTACGAACTGTCCCAACAAACCGTG
CTGAAGAATAACTTGCCGACCCTCACATGCCTTCCCGCCATCTGCCCCAG
GCGTGCAACTCCATCGGCTGCCCCAATGGTCTCGTCCCCATCCCAAACGC
CGACACCGTAGTCTGCGAGGAAGATCCTTGTTCCGTGGATCAGTGCTGCT
TAGCGTTCTGCAATTCCATCGGCTGTCCCAATGGTCTCATTCCCATCCCA
AACGCCAACACCGTACTCTGCGAGGAAGATCCTTGCTCCACGAATCAGTG
CTGTGAGGCGTACTGCTCGAGCTTCCCCTGCCCGAACGGCCTCACCCCCA
TCCCCTTCGCGTCGTCCACCCTGTGCCCGGGCAACGTTTGCCTCCAAGAC
GAGTGCTGCGAGGCCCTCTGCTCTGGATTCCCCTGTCCCGATTCCTTCGT
GCCGGTCGAGAACGCGAACACGATCGTGTGCCCGGGCCAAGACTGCACGG
TGGGACTGTGCTGCATCGACTGGACTGCGGAAACCACCGACTCGAACGTG
TACTGTAACTCCATCGGCTGCCCCAATGGTCTCATCCCCATCCCAAACGC
CAACCTTGTCCCGTGCACGGGCGACACCTGCACTACAGACCAGTGCTGTG
AGGCGTACTGCTCGAGCTTCCCCTGCCCGAACGGCCTCACCCCCATCCCC
TTCGCGTCGTCCACCCTGTGCCCGGGGAACGATTGCACCCAAGACGAGTG
CTGCGAGGCCCTCTGCTCTGGATTCCCCTGTCCCGATTCCTTCGTGCCGG
TTGAGAATGCGAACACGATCGTGTGCCCGGGCCAAGACTGCACGGTGGGA
CTGTGCTGCATCGACTGGACTGCGGAAACCACCGACTCGAACGTGTACTG
TAACTCCATCGGCTGCCCCAATGGTCTCATCCCCATCACTAACGCCAACC
TTGTCCCGTGCACGGGCAACATCTGTACTACAGACCAGTGCTGTGAGGCG
TTCTGCTCGAGCTTCCCCTGCCCGAACGGCCTCACCCCCATCCCCTCCGC
GTCGTCCACCCTGTGCCCGGGGAACGATTGCACCCAAGAAGAGTGCTGCG
AGGCCCTCTGCTCTGGATTCCCCTGCCCCAACGGGTTGGTTCCCGTCGTA
AATGCGAACACAATCGTGTGCCCTTCACAGGTTTGCACCGAATTCCTGTG
CTGCATGTAACGACCAGTACTTGCTCAGGTGAGGCGTGTATCCAAGGGTT
TTGTGTCGACTTCACGACTGTCTCCCACTATCATAAAAACCAGATGAAGT
CAAGTAGACCTGACTCACTAGATGTACCTTCCTTTCGTCGTGTTCGATCG
AATCGTGGCCTACGGCAGGAATGAGGACGCCTGTGCTTAAAGGGAGTACT
ACGCGTGAGGTCTAGGACGCGGCGCATCGTGTTACATTGGGTTTCTGCGG
ACAACTCGGCCCCGTAGAGCGGTGTGAAGTCGTCTGTTGGAGAAGGCACG
ACGTATAGAACGTTGTGACGGGTGAACGCTTGGAAAATGTTGGTTCCGGA
CACGAGCACGTGTGTGAGGGCCTCTGAACGGCATGTAGACAGGAGTAAGA
GACCATCAACCAGTACGCCTAAGGACTCCGGAGCCCACCAGTTCCAAACG
AACAGCTCACGTTCGTTGGGCTGCCATTAGATGGGGAAAACGCTTGAGGC
ATCATAACGAGTGGTTTGAAAGATCGGATGCCTTTGTATGAAGCCTTGGA
GTATCAGGAATGAAATGATACGTGTAGCTGGCCGTGATCATGAAAGATTG
CATTAGTCTATTTAGGATTGCCAAACACAAAAGCATGGGGGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1011:246115..249007-

>mRNA_D-dichotoma_M_contig1011.188.1 ID=mRNA_D-dichotoma_M_contig1011.188.1|Name=mRNA_D-dichotoma_M_contig1011.188.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1890bp|location=Sequence derived from alignment at D-dichotoma_M_contig1011:246115..249007- (Dictyota dichotoma ODC1387m male)
ATGGTTCGTGCGGCGACTTTCGTGTCCCTCTTCTTCGTTGCCAGCCCATC
ATTTGAGGGCGTTCTGTACGGCTCGGCCGTACCGCACGGCATCCCCAACA
ATGATGGTTCGTGCGGCGACTTTCGTGTCCCTCTTCTTCGTTGCCAGCCC
ATCATTTGAGGGCGTTCTGTACGGCTCGGCCGTACCGCACGGCATCCCCA
ACAATGGCCAAGGCGAGGTCAACGCAATGGAACTTGGTGGCAATACTGGG
GAGAAGGGCAACTTAAGACGCAATCTTCAAACGGCCAAGGCGAGGTCAAC
GCAATGGAACTTGGTGGCAATACTGGGGAGAAGGGCAACTTAAGACGCAA
TCTTCAAACGGCGTGCAACTCCATCGGCTGCCCCAATGGTCTCGTCCCCA
TCCCAAACGCCGACACCGTAGTCTGCGAGGAAGATCCTTGTTCCGTGGAT
CAGTGCTGCTTAGCGTTCTGCAATTCCATCGGCTGTCCCAATGGTCTCAT
TCCCATCCCAAACGCCAACACCGTACTCTGCGAGGAAGATCCTTGCTCCA
CGAATCAGTGCTGTGAGGCGTGCAACTCCATCGGCTGCCCCAATGGTCTC
GTCCCCATCCCAAACGCCGACACCGTAGTCTGCGAGGAAGATCCTTGTTC
CGTGGATCAGTGCTGCTTAGCGTTCTGCAATTCCATCGGCTGTCCCAATG
GTCTCATTCCCATCCCAAACGCCAACACCGTACTCTGCGAGGAAGATCCT
TGCTCCACGAATCAGTGCTGTGAGGCGTACTGCTCGAGCTTCCCCTGCCC
GAACGGCCTCACCCCCATCCCCTTCGCGTCGTCCACCCTGTGCCCGGGGA
ACGATTGCACCCAAGACGAGTGCTGCGAGGCCCTCTGCTCTGGATTCCCC
TGTCCCGATTCCTTCGTGCCGGTTGAGAATGCGAACACGATCGTGTGCCC
GGGCCAAGACTGCACGGTGGGACTGTGCTGCATCGACTGGACTGCGGAAA
CCACCGACTCGAACGTGTACTGTAACTCCATCGGCTGCCCCAATGGTCTC
ATCCCCATCACTAACGCCAACCTTGTCCCGTGCACGGGCAACATCTGTAC
TACAGACCAGTGCTGTGAGGCGTTCTGCTCGAGCTTCCCCTGCCCGAACG
GCCTCACCCCCATCCCCTCCGCGTCGTCCACCCTGTGCCCGGGGAACGAT
TGCACCCAAGAAGAGTGCTGCGAGGCCCTCTGCTCTGGATTCCCCTGCCC
CAACGGGTTGGTTCCCGTCGTAAATGCGAACACAATCGTGTGCCCTTCAC
AGGTTTGCACCGAATTCCTGTGCTGCATGTAAGCGTACTGCTCGAGCTTC
CCCTGCCCGAACGGCCTCACCCCCATCCCCTTCGCGTCGTCCACCCTGTG
CCCGGGGAACGATTGCACCCAAGACGAGTGCTGCGAGGCCCTCTGCTCTG
GATTCCCCTGTCCCGATTCCTTCGTGCCGGTTGAGAATGCGAACACGATC
GTGTGCCCGGGCCAAGACTGCACGGTGGGACTGTGCTGCATCGACTGGAC
TGCGGAAACCACCGACTCGAACGTGTACTGTAACTCCATCGGCTGCCCCA
ATGGTCTCATCCCCATCACTAACGCCAACCTTGTCCCGTGCACGGGCAAC
ATCTGTACTACAGACCAGTGCTGTGAGGCGTTCTGCTCGAGCTTCCCCTG
CCCGAACGGCCTCACCCCCATCCCCTCCGCGTCGTCCACCCTGTGCCCGG
GGAACGATTGCACCCAAGAAGAGTGCTGCGAGGCCCTCTGCTCTGGATTC
CCCTGCCCCAACGGGTTGGTTCCCGTCGTAAATGCGAACACAATCGTGTG
CCCTTCACAGGTTTGCACCGAATTCCTGTGCTGCATGTAA
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