mRNA_D-dichotoma_M_contig1011.184.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1011.184.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI) HSP 1 Score: 265 bits (676), Expect = 2.240e-67 Identity = 418/1355 (30.85%), Postives = 550/1355 (40.59%), Query Frame = 3
Query: 876 LTVADRVVTEYERLLEAMPTLAKHMGRVQAETEAMAMGLEKRVQDLVSGYRELGDLAEQAPLHVMQTASDYANALGCSPVXXXXXXXXGGGNSPGVDEEFNVEAIHREIFALRETKIALDKSVAPLPGYETREEDQ-------------IAGRAN--AQGADGKGQASAPASSGS-RLHSATLARSPAETVAGRQRGR-----------GGGIDRGKVARGRRRPGVSSAVTRRALVELQVDPDRPLPLPAFPGVSTM-------------PLQAEGRNT--ATMKHHGATDGAAR-----EGR-HRYPVPGAVTPKQRQSHGLPQELRAIATIPTPEGRSGVNERRRARRPR------------PDGLSAAGGGIRPPAPPIRVPG---------GSGKSPPPRPLPGSVEAAALAREQRRHAIKAVEELKKEMRDRXXXXXXXXXXXXXXXXXXXXEGGSPPNPIRESASKAAVVPVVAAATGASGRRSPPCGQQRYDPTSVYLAPASVGGRDRDRRAKSVNTKGTQRKAGANTTIERKTKGGXXXXRAEADRAEDGAKVREPLPSPAEAVDARVQTASDDAGGVXXXXXXXXXXXXXPAAPAKAADAFMQTDGVRLYLNPVSGSGAEL---VSSSSTKGDGRGTNRDVTPAGVGTCTRLDNVAEQPGLVLSSPLSSVGGG-------LERVLDAQL-VMPPPPVVFVEGDGRNAAWRPCDDDDLLRQQ---------ERAGTGREPGARFSEAPVRTVLAQRSAVIDDSESRGPGEREPSTALPVDVERAVDQPIRLTTGRLYED---PSSCVDDGERWVEGDNLLPLVASEGRNGVGVEAPAPATPAVKER---ELTAPETTTVSSLILPPELIELLREVVGQRRSVEEERSALMQTLRAEVEARRDLLADQASSSIREREVTSLSPGERPPEVGDLAMQPSTADAEARPSEILPDGQDGDERSSRETSEEVEVSGSSXXXXXXXXXXXXXXXXGE---VVDDPGGRDGGVGDMHGSETRIDSNGSQAGVQGKKPGVPAPAKAEAVQGTYHEFRSNLGRMLAGGESWSRLPLAESP--APRRTFSXXXXXXXXXXXXXXXXXXXXXXXXXXTETPRDHLADGRVALGDSDEDVQGILWGAPGGAGDGDGGEATSPIHDGASRQAAALESRRFFGSKNKSEKQKHWLQSCRGAESSLDSQGCGLDANIPVEGVDSCVQTEEPGIDLHHPRVLRAADA----------------STAMGRGRLELSLATAVLSMTQRMTQMESEAWARAQNAETAAKEALEESKRQAVTSRERQSEVMLRLEQMEKGSHERAAVVTTEVARLREEARLAKEGV 4592
L VAD VVTEYE+LL A+PT+A+HMG++Q +TE MA GLE+RV+ LV GYREL +L +QAP+ V AS+YA ALG G G G DE +VE IHRE+FAL+E KIALD ++ P T+ + + +A RA+ QG + +A A G R + T+A GG+ R RP RRALVE+QVDPDRPLPLP FPG + QA N+ +KH G+ G EG H Y VPG V PKQRQSHGLP+ELRAI+TIPTPE R P AA + PP P R P RP PGS A A AR+QRR +AV+ L+KEM +R XX XXXXXXXXX A G + G A + ++ + +G A+ D E+G + P+ + DA+ QTA+D GV+L+L+P L + S +G G ++ G + V E L +S LSSV GG L R L +L V PP PVVFVEG+GRN WRP DDD LLR + + TG R +LA + +D++ P ERE IRLTTGRL P S V DG WVE +L + A AP A P++ E E A +++T ++ PEL++L+REVVGQ+R + EER R E Q + +R P +R P T++ +A +E E SGS XXXX V D GG + + G GV ++P P + FRSNLGR+LA G W +PL E A + F XXX A G+ D VQ +LW A GD G A SP ++A+ALESRRF + ++SE ++ + L S G +D G RL LSLATAVLS+ QR++ +E A ARA+ AE A++A+EE++++ R+RQSEVM RLE+ME GS +RA VV E+A LREE RL ++ +
Sbjct: 93 LNVADAVVTEYEKLLAAVPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPVRVSDAASEYAQALGLRRTQGSPLLGDGAGMD-GSDEALDVEGIHRELFALKEAKIALDAAIMLAPTDPTQRQQRRGALDRHSTSSARVANRASRGVQGVSRRSGITAVAGGGGERSYRRTVAXXXXXXXXXXXXXXXXXXXXXXXXAAGGVTR--------RPS-----DRRALVEMQVDPDRPLPLPTFPGHGKLLGGEAKHXXXXXXXXQAPSGNSLPGDLKHPGSGGGGGEADQPGEGHYHGYFVPGVVAPKQRQSHGLPRELRAISTIPTPEKRPASRATASXXXXXXXXXXXXXLAQPPSARRAAAVPVAPPLP--RQPAEXXXXXXXXXXXXXSASRPDPGSSAALASARDQRRSTRRAVDALRKEMLEREARLEXXLDRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGKRRGSTAA-AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSRDSVGEEAEG------ADNDD-EEGGRGSRPVARSVDTADAQAQTAAD---------------------------------GVQLFLHPQPAIREALRVPANQPSPEGHAVGAHQQTRSTG-------NVVEEHYYLDDASFLSSVSGGGEEDGSGLGRQLGGRLHVSPPGPVVFVEGEGRNRYWRPADDDRLLRGEGGSSAAAFGATSATGASGAEALHSGDARLILAAK----EDNDDGRP-ERE----------------IRLTTGRLEAAAVAPES-VQDGA-WVELAGMLAMSA----------APPTARPSISETLSGEGQAGKSSTEAAAA-SPELLDLMREVVGQQREMGEER-------REEEGKSGSADGGQGEQQLVDRPT----PTDR--------FWPITSEHDA--------------------AELAEESGSGTNGEGXXXXVQGQGVAAAKVVAVRDDGGTE-------------EEKGEAGGVSAQQP----PPQT---------FRSNLGRLLAAGSGWKDVPLEEDGDGAAEKVFKTSLXXXLAGGPGGALKGEAGVLGVGGGANSGSSRTGTSRAAGEPD--VQELLWEA---GRRGDTG-ALSP-ETAVRKRASALESRRFLSAVSESEAKR----CAEERDGGLSSPGSDVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDGQGGERLHLSLATAVLSVAQRLSAVEERALARAEGAEGLARQAMEETRKEGADGRQRQSEVMHRLEEMEHGSEKRARVVAREIAELREEGRLERQRI 1273
BLAST of mRNA_D-dichotoma_M_contig1011.184.1 vs. uniprot
Match: A0A6H5K2S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S2_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.900e-21 Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 3
Query: 876 LTVADRVVTEYERLLEAMPTLAKHMGRVQAETEAMAMGLEKRVQDLVSGYRELGDLAEQAPLHVMQTASDYANALG 1103
LTVAD VVTEYE+LL A+PT+A+HMG++Q +TE MA GLE+RV+ LV GYREL +L +QAP V AS+YA ALG
Sbjct: 43 LTVADAVVTEYEKLLAAIPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPARVSDAASEYAQALG 118
BLAST of mRNA_D-dichotoma_M_contig1011.184.1 vs. uniprot
Match: A0A6H5L5H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H4_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.120e-20 Identity = 210/655 (32.06%), Postives = 268/655 (40.92%), Query Frame = 3
Query: 1491 RRALVELQVDPDRPLPLPAFPGVSTMPLQAEGRNTAT----------------MKHHGATDGAAREGR------HRYPVPGAVTPKQRQSHGLPQELRAIATIPTPEGRSG-------VNERRRAR------RPRPDGLSAAGGGIRPPAPPIRVP--------GGSGKSPPPRPLPGSVEAAALAREQRRHAIKAVEELKKEMRDRXXXXXXXXXXXXXXXXXXXXEGGSPPNPIRESASKAAVVPVVAAATGASGRRSPPCGQQRYD--------------PTSVYLAPASVGGRDRDRRAKSVNTKGTQRKAGANTTIERKTKGGXXXXRAEADRAEDGAKVREPLPSPAEAVDARVQTASDDAGGVXXXXXXXXXXXXXPAAPAKAADAFMQTDGVRLYLNPVSGSGAEL---VSSSSTKGDGRGTNRDVTPAGVGTCTRLDNVAEQPGLVLSSPLSSVGGGLERVLDAQL-VMPPPPVVFVEGDGRNAAWRPCDDDDLLRQQERAGTGREPGARFSEAPVRTVLAQRSAVIDDSESR-----GPGEREPSTALPVDVERAVDQPIRLTTGRLYED---PSSCVDDGERWVEGDNLLPLVASEGRNGVGVEAPAPATPAVKERELTAPE----TTTVSSLILPPELIELLR 3236
RRALVE+QVDPDRPLPLP FPG + L E ++ + +KH G+ G + H Y VPG V P+QRQSHGLP+ELRAI+TIPTPE RS + +RRR R +P P AA PP P GG G S RP GS A A AR+QR A +AV+ L+KEM +R XXXXXXXXXXXXXXXXX A GRR P P+S AP ++ A + G + A+ E G ++G + P+ E DA+ QTA+D GV+LYL+P L + S KG G + T + NV E+ L +S LS L R L + V PP PVVFVEG+GRN +WRP DDD LLR G G A F A + +D ++R G RE D + ++ IRLTTGRL P S V +G WVE +L + A AP A P++ E E + + PEL++L+R
Sbjct: 97 RRALVEMQVDPDRPLPLPTFPGHGKL-LGGEAKHHSNKHQQQQAPSGNNLPGDLKHPGSGGGXXEADQPGGGHYHGYFVPGVVAPRQRQSHGLPRELRAISTIPTPEKRSASRATASAIGQRRRVRSRSALAQP-PSARRAAAVPAAPPLPRQSAEATAIGPGNGGYGVSTS-RPDSGSAAALASARDQRMSARRAVDALRKEMLEREARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XAIGRRRGPTASXXXXXXXXXXXXXXXXXXPSSRVQAPT-------EKPAVAGAVAGAVSRDSADEEAEGADNDG-----------DEGGRGSRPVARSVETADAQAQTAAD---------------------------------GVQLYLHPQPAIRKALRLGANQPSPKGHAAGAHHQQTRS-------AGNVVEEHYLDDASFLS-----LSRQLGGRRHVSPPGPVVFVEGEGRNRSWRPADDDRLLR-----GEGGSSAAAFGATSA--TGAGGAEDLDGGDARLILAAKEGGRE------XDDDGRPERDIRLTTGRLEAAAVAPES-VQNGA-WVELAGMLAMSA----------APPTARPSISETPSGEGEGQAGKNSTEAAAASPELLDLMR 656 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1011.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1011.184.1 >prot_D-dichotoma_M_contig1011.184.1 ID=prot_D-dichotoma_M_contig1011.184.1|Name=mRNA_D-dichotoma_M_contig1011.184.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=1917bp MFGAKATAGISKPSAGRRQAPSAEARGGRLDPAMRVKSNVVGGARSVHARback to top mRNA from alignment at D-dichotoma_M_contig1011:12714..46734- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1011.184.1 ID=mRNA_D-dichotoma_M_contig1011.184.1|Name=mRNA_D-dichotoma_M_contig1011.184.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=34021bp|location=Sequence derived from alignment at D-dichotoma_M_contig1011:12714..46734- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1011:12714..46734- >mRNA_D-dichotoma_M_contig1011.184.1 ID=mRNA_D-dichotoma_M_contig1011.184.1|Name=mRNA_D-dichotoma_M_contig1011.184.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=11502bp|location=Sequence derived from alignment at D-dichotoma_M_contig1011:12714..46734- (Dictyota dichotoma ODC1387m male)back to top |