mRNA_D-dichotoma_M_contig1010.177.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1010.177.1
Unique NamemRNA_D-dichotoma_M_contig1010.177.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1010.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1010contigD-dichotoma_M_contig1010:58946..59544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size599
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1010.177.1prot_D-dichotoma_M_contig1010.177.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1010 59091..59399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.6939983-UTR-D-dichotoma_M_contig1010:58945..590901622927493.6939983-UTR-D-dichotoma_M_contig1010:58945..59090Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1010 58946..59090 +
1690797999.199306-UTR-D-dichotoma_M_contig1010:58945..590901690797999.199306-UTR-D-dichotoma_M_contig1010:58945..59090Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1010 58946..59090 +
1622927493.7200627-UTR-D-dichotoma_M_contig1010:59399..595441622927493.7200627-UTR-D-dichotoma_M_contig1010:59399..59544Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1010 59400..59544 +
1690797999.2207391-UTR-D-dichotoma_M_contig1010:59399..595441690797999.2207391-UTR-D-dichotoma_M_contig1010:59399..59544Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1010 59400..59544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.7103844-CDS-D-dichotoma_M_contig1010:59090..593991622927493.7103844-CDS-D-dichotoma_M_contig1010:59090..59399Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 59091..59399 +
1690797999.2079473-CDS-D-dichotoma_M_contig1010:59090..593991690797999.2079473-CDS-D-dichotoma_M_contig1010:59090..59399Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 59091..59399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1010.177.1

>prot_D-dichotoma_M_contig1010.177.1 ID=prot_D-dichotoma_M_contig1010.177.1|Name=mRNA_D-dichotoma_M_contig1010.177.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=103bp
MRLLVLTGGSVNTLLSAAIAALGYGCPTLNRPLALLVKVVHASSSAGVTV
MVAKSPRVGRSALVSLVFGRKCDDRHFDDLFLGKADGILLGICNPRRAQC
CW*
back to top

mRNA from alignment at D-dichotoma_M_contig1010:58946..59544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1010.177.1 ID=mRNA_D-dichotoma_M_contig1010.177.1|Name=mRNA_D-dichotoma_M_contig1010.177.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=599bp|location=Sequence derived from alignment at D-dichotoma_M_contig1010:58946..59544+ (Dictyota dichotoma ODC1387m male)
AGCGGTTCTAGTGTGCCTTCTTCGAGCGCTGGATGGTGTACTCGGACCAA
ACTCTTCCAGCTCATGGAAAAGCAAGTTCATCTCTCTTAGGAGCTTGGCA
CTGCGAGGTCTTCTGAACTTGTTGCGTGTTATCTTCGTCTTCTGCATGAG
ATTATTGGTATTAACCGGTGGATCGGTCAACACTCTCTTATCAGCAGCAA
TCGCTGCATTAGGATACGGATGCCCTACATTGAACCGTCCACTGGCGTTA
CTGGTCAAGGTGGTCCATGCCTCGAGCTCCGCAGGTGTGACGGTCATGGT
GGCAAAGTCGCCAAGGGTCGGTCGAAGCGCGCTAGTATCACTGGTTTTTG
GTCGGAAGTGCGACGATCGCCATTTTGATGATCTGTTCTTGGGCAAGGCT
GATGGCATCCTTCTCGGAATCTGTAATCCACGTCGAGCACAATGTTGCTG
GTAAACTGGAACCTGTTGCGAGATGATCGAATCAAGAATTCGCGAGGTGA
TAGTCACCCAATGTAGTACTGTAGCACTCCAGGACTTTGGGGAAGTCCAT
TTGTCTTGCTGTGTAGCAATGCTACGTTTGTGAAGAGGTGTTATGGATC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1010:58946..59544+

>mRNA_D-dichotoma_M_contig1010.177.1 ID=mRNA_D-dichotoma_M_contig1010.177.1|Name=mRNA_D-dichotoma_M_contig1010.177.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=618bp|location=Sequence derived from alignment at D-dichotoma_M_contig1010:58946..59544+ (Dictyota dichotoma ODC1387m male)
ATGAGATTATTGGTATTAACCGGTGGATCGGTCAACACTCTCTTATCAGC
AGCAATCGCTGCATTAGGATACGGATGCCCTACATTGAACCGTCCACTGG
CGTTACTGGTCAAGGTGGTCCATGCCTCGAGCTCCGCAGGTGTGACGGTC
ATGGTGGCAAAGTCGCCAAGGGTCGGTCGAAGCGCGCTAGTATCACTGGT
TTTTGGTCGGAAGTGCGACGATCGCCATTTTGATGATCTGTTCTTGGGCA
AGGCTGATGGCATCCTTCTCGGAATCTGTAATCCACGTCGAGCACAATGT
TGCTGGTAAATGAGATTATTGGTATTAACCGGTGGATCGGTCAACACTCT
CTTATCAGCAGCAATCGCTGCATTAGGATACGGATGCCCTACATTGAACC
GTCCACTGGCGTTACTGGTCAAGGTGGTCCATGCCTCGAGCTCCGCAGGT
GTGACGGTCATGGTGGCAAAGTCGCCAAGGGTCGGTCGAAGCGCGCTAGT
ATCACTGGTTTTTGGTCGGAAGTGCGACGATCGCCATTTTGATGATCTGT
TCTTGGGCAAGGCTGATGGCATCCTTCTCGGAATCTGTAATCCACGTCGA
GCACAATGTTGCTGGTAA
back to top