mRNA_D-dichotoma_M_contig1010.176.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1010.176.1
Unique NamemRNA_D-dichotoma_M_contig1010.176.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1010.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1010contigD-dichotoma_M_contig1010:57503..58512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size394
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1010.176.1prot_D-dichotoma_M_contig1010.176.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1010 57504..58512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.6356528-CDS-D-dichotoma_M_contig1010:57503..576331622927493.6356528-CDS-D-dichotoma_M_contig1010:57503..57633Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 57504..57633 -
1690797999.1615608-CDS-D-dichotoma_M_contig1010:57503..576331690797999.1615608-CDS-D-dichotoma_M_contig1010:57503..57633Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 57504..57633 -
1622927493.647678-CDS-D-dichotoma_M_contig1010:58011..582331622927493.647678-CDS-D-dichotoma_M_contig1010:58011..58233Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 58012..58233 -
1690797999.1791284-CDS-D-dichotoma_M_contig1010:58011..582331690797999.1791284-CDS-D-dichotoma_M_contig1010:58011..58233Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 58012..58233 -
1622927493.6580389-CDS-D-dichotoma_M_contig1010:58471..585121622927493.6580389-CDS-D-dichotoma_M_contig1010:58471..58512Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 58472..58512 -
1690797999.1898267-CDS-D-dichotoma_M_contig1010:58471..585121690797999.1898267-CDS-D-dichotoma_M_contig1010:58471..58512Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1010 58472..58512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1010.176.1

>prot_D-dichotoma_M_contig1010.176.1 ID=prot_D-dichotoma_M_contig1010.176.1|Name=mRNA_D-dichotoma_M_contig1010.176.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=131bp
REKLREEVKAREKSQIETIHRATQLARDLGEAFVYIPHRTGGKVNVLKAD
VIKHVKGKGGEQDSAKPNSSDCGRVMSFDFFLKTEKARLEKEFYKRREGR
RQATQEEAMVSSSAGCPPSRLVPTTIRRDTG
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mRNA from alignment at D-dichotoma_M_contig1010:57503..58512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1010.176.1 ID=mRNA_D-dichotoma_M_contig1010.176.1|Name=mRNA_D-dichotoma_M_contig1010.176.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1010bp|location=Sequence derived from alignment at D-dichotoma_M_contig1010:57503..58512- (Dictyota dichotoma ODC1387m male)
CGGGAAAAGCTCAGGGAGGAAGTGAAGGCCAGGGAAAAAAGGTATTGCTA
CGGAGTCGACGAGTGGGAATGAGTTGCGCATTCAACGCTTGTATTTGGAG
ACCGGTGTTGGACGCGATTTTGCTATAACCTTTTTCTTCCAAACTCATAT
CGAGCTGGTCATCAACGAGACCGATGCATTATCCAGCTGGTCATCCCACA
AGGTGCCACGTGCCCTCCTCACCTGACATTTGGCGTGCCCTCCTCACCTG
ACATTTGGCGTGCCCATTTGATCTCCCAGTCAGATTGAGACCATTCACAG
GGCTACGCAACTTGCCAGAGATTTAGGAGAAGCCTTCGTCTATATCCCGC
ATCGCACGGGTGGAAAGGTCAACGTCCTTAAGGCCGATGTCATCAAGCAT
GTCAAAGGGAAAGGCGGAGAGCAAGATTCTGCCAAGCCTAATAGCAGCGA
CTGCGGCAGGGTTATGTCCTTCGATTTCTTCCTGAAGACGGAGAAAGCAA
GGTGGGCTGCATGCGCGATTCACAGAAGTAAAAATTGCAACAACACGTGG
ATTATCAAGATCCGGTATGTGTCAGTGCGTCAGACACTCAAGGTCTACCT
ACTGTAGGTCAAGGAACACCGGTCGCAGAATTATGATAGATACCTGGTAG
CTGGTCTTGGCCCCAATTCTGTGAAGAAGGTTGCGGCGTTAAGTTGAAAA
GGGTAGCCGGTCGATGTTCTACCAGATTACCTTTGTCTAGTCTCTTCGTT
TTGTCTCGCCACTTTTCTCTTTTCGTGGAGGATTCGTATCGAGAGGTCAC
CACTCTACTCACGAGACGCTCTGCGTCTTCTTGTACTCGTTTGCGGACTG
GTACTTTGCAATCGTCGTGGTGTCAGCAGGCTGGAGAAGGAATTTTACAA
ACGTCGCGAAGGCAGACGGCAAGCAACGCAGGAGGAGGCGATGGTGAGCA
GCAGCGCGGGGTGCCCCCCCTCGCGTCTCGTTCCGACAACCATCAGACGT
GATACCGGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1010:57503..58512-

>mRNA_D-dichotoma_M_contig1010.176.1 ID=mRNA_D-dichotoma_M_contig1010.176.1|Name=mRNA_D-dichotoma_M_contig1010.176.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=786bp|location=Sequence derived from alignment at D-dichotoma_M_contig1010:57503..58512- (Dictyota dichotoma ODC1387m male)
CGGGAAAAGCTCAGGGAGGAAGTGAAGGCCAGGGAAAAAAGCGGGAAAAG
CTCAGGGAGGAAGTGAAGGCCAGGGAAAAAAGTCAGATTGAGACCATTCA
CAGGGCTACGCAACTTGCCAGAGATTTAGGAGAAGCCTTCGTCTATATCC
CGCATCGCACGGGTGGAAAGGTCAACGTCCTTAAGGCCGATGTCATCAAG
CATGTCAAAGGGAAAGGCGGAGAGCAAGATTCTGCCAAGCCTAATAGCAG
CGACTGCGGCAGGGTTATGTCCTTCGATTTCTTCCTGAAGACGGAGAAAG
CAAGTCAGATTGAGACCATTCACAGGGCTACGCAACTTGCCAGAGATTTA
GGAGAAGCCTTCGTCTATATCCCGCATCGCACGGGTGGAAAGGTCAACGT
CCTTAAGGCCGATGTCATCAAGCATGTCAAAGGGAAAGGCGGAGAGCAAG
ATTCTGCCAAGCCTAATAGCAGCGACTGCGGCAGGGTTATGTCCTTCGAT
TTCTTCCTGAAGACGGAGAAAGCAAGGCTGGAGAAGGAATTTTACAAACG
TCGCGAAGGCAGACGGCAAGCAACGCAGGAGGAGGCGATGGTGAGCAGCA
GCGCGGGGTGCCCCCCCTCGCGTCTCGTTCCGACAACCATCAGACGTGAT
ACCGGAGCTGGAGAAGGAATTTTACAAACGTCGCGAAGGCAGACGGCAAG
CAACGCAGGAGGAGGCGATGGTGAGCAGCAGCGCGGGGTGCCCCCCCTCG
CGTCTCGTTCCGACAACCATCAGACGTGATACCGGA
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