mRNA_D-dichotoma_M_contig101.170.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig101.170.1
Unique NamemRNA_D-dichotoma_M_contig101.170.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig101.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig101contigD-dichotoma_M_contig101:593080..597660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1292
Cds size1290
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig101.170.1prot_D-dichotoma_M_contig101.170.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig101 593080..597660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.5899382-CDS-D-dichotoma_M_contig101:593079..5932651622927488.5899382-CDS-D-dichotoma_M_contig101:593079..593265Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 593080..593265 -
1690797997.843563-CDS-D-dichotoma_M_contig101:593079..5932651690797997.843563-CDS-D-dichotoma_M_contig101:593079..593265Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 593080..593265 -
1622927488.6006951-CDS-D-dichotoma_M_contig101:594052..5950391622927488.6006951-CDS-D-dichotoma_M_contig101:594052..595039Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 594053..595039 -
1690797997.8573623-CDS-D-dichotoma_M_contig101:594052..5950391690797997.8573623-CDS-D-dichotoma_M_contig101:594052..595039Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 594053..595039 -
1622927488.6125681-CDS-D-dichotoma_M_contig101:595466..5955351622927488.6125681-CDS-D-dichotoma_M_contig101:595466..595535Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 595467..595535 -
1690797997.86625-CDS-D-dichotoma_M_contig101:595466..5955351690797997.86625-CDS-D-dichotoma_M_contig101:595466..595535Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 595467..595535 -
1622927488.6231732-CDS-D-dichotoma_M_contig101:597612..5976601622927488.6231732-CDS-D-dichotoma_M_contig101:597612..597660Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 597613..597660 -
1690797997.8750823-CDS-D-dichotoma_M_contig101:597612..5976601690797997.8750823-CDS-D-dichotoma_M_contig101:597612..597660Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 597613..597660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig101.170.1

>prot_D-dichotoma_M_contig101.170.1 ID=prot_D-dichotoma_M_contig101.170.1|Name=mRNA_D-dichotoma_M_contig101.170.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=430bp
LVLVSNADFIEMKITQAGDTLLRSRDCAGQLICSPPASRRHRLSILSGTI
PQALRSLQIPKLSPLGDLARSKGRLLGLVIKRATKMSSLKKDSRESNGKE
TVEGARAAAAGEETIPREFESKKSESHALLESKRAVGEGLMSSLQKASQS
LTRARQSFARVGQSLTRRTQSPVGEQVKHAVKAIVEANPSEVGNRANDLD
NSLLAAVSDGIKTKERVRSISGIGMKNPDGEQLSDKPGADGCSESEVGCE
VTRLAAEGFDIEKDDEKLAAASPENSIAMVSRSGHSTVLGPPASAAGGAD
SEGGDRDGTHNNDGDEPFPSMLGIGADQSTVAPMASVSATSQFDSRKKSR
ATFPQGVGSLDDKVKGPRAKLLLEMEGRGLGRDPAYHRDHGAKAIRSPYL
WRTQGSSRVAAESIPGSGQKVTTNLKHVL*
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mRNA from alignment at D-dichotoma_M_contig101:593080..597660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig101.170.1 ID=mRNA_D-dichotoma_M_contig101.170.1|Name=mRNA_D-dichotoma_M_contig101.170.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4581bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:593080..597660- (Dictyota dichotoma ODC1387m male)
CTGGTTCTCGTGAGCAACGCTGACTTCATCGAGATGAAGATAACGCAGGT
ATGGTTATGTGCAAGCGCTCTCTGGGCTCAGATCCGGGGTAACCAGTGGA
GGTCTAAAATAGCAGCAATCTTTTTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTAGGTGCTCCAAAGTTCTGATACAGAGGACAAAGCCGAGTGGAA
GCTTTTCCGCGGGTAGAGAGTATGAAACGTAGGGCACTGGTGCTCAGTAG
TCAAAAGGAAATGGGTTGGTAAGATGTCAACTTAGCCCGCCGTCTGAATG
GCTCCATCCGCGGTCGACTGCAGTAGCATGTTCGTTCACGATGTGTGTGT
GTGTGTGTGTGTGTATTTGTTTCGAGGTACTCCCCAAGTTGGGTGTCAAG
TTAAGATGCGAAAAATTGCAAGCCAGCCACGCTGGTACTAGTGTACTATC
TAGTGTGTCGACAGTACATTGTATTGTATTTCAATGTAGTGAAGGATAGT
TTATTGCAAAGGTGTCGCGCCGGGGCCAATAATACAGGAGTATCCCTCAA
ATCCCACACATGCGGTGCGGATTTCGCTGAGTTAGCAAAGGAGCAACCGC
TGGAATTGCCCGGAATCAATCTTTCGAGCAAGTACTGTAGAGTCATGTGC
ACTTCACCGTTAGGTTCATGCGACTAATTTGAGCTGTCGCTAAGAATAAC
GTTGGTCTATGACATATCTTTGCATTTACGTTCAACTCGAAATAATCCTA
CAGTAGTTGACGGGGCAAAAATGCGCCATCTGGGACTCGCGATCAAGGCG
CTATGGTTTTTCTCGGAACTAACCGATCAAAAGGACTTGAATGCATTTCG
ACGGACTTAGACGGGTGTCAACCGACTCCAGCATATTTTCGACGGAGTTA
AACGGATATGTTTCCCTTCCGCTGCCTGCGTCTTCCTCGCATGAGTAATT
CAAGCTAAGGTGTTACCTTTCTAACTCAGCGAAACACATAATTTATGGAA
TTTGACGAGTAGTAGATTCCATCGTAATACTCAAGACGCGAGACGCGAGA
CGTGATAGACGAAACTGCCGAGACGAGGTCCCTCCAGCAGCGATGGCGAT
GACGGGAACGGGGAATTTTGGGGGGTACCTCCAGCGACGTAGGTATTATT
CTGGGTGGTTGAGCTGTCTTTCGGGAGGAGTAACCCATTGCTTGCAGGCA
AGAACCTGGTGCTCTCCACGCTGTAGCTATTCCATGCCGCGAGTTTACAA
GGCGTCAAAGCTGGCGTCACCCTGTGAGCCTTTCAGAATCTGTACAACAG
TCTGTCGGAGTAGCACTCTATTCCTAGACGAGGGATGGATCTGCTAGGTT
GATTCGTATCGGGGGCAATTTCGAAGAAGATTTCCGTGAGTTCGCAATCC
TAACTTCGAGTTGGAGCCCATCTGTTGTTCGACAAGTCAAAAGGCAGGTC
TACTCATCATCCCCTGAACGACTTTATCCATGCGAATACTGTGCTATGGC
CAGCTTTGAAATCAACCCTGTTGGGCACGAGGTGTGGTGAGTTATATAGC
GAAAGTTGCGCACGTGCTTCAAGGTCTTGCAATACCAACTTGAGGTTCTA
TCTCCCTCTAAAGTAGATGGTGTTGTTGTAGAATATGGTGGCTCGACAGT
GTTTGGCCAAGGGCTTTCAGGCAATGAATACATTCGATTATCCAAATTCC
AAAATTCTGCCTTCAACATATAAAAAAACGGATGTTTTCCGATTATAGGC
TACGCTTCGAATATCGATATCACGGAAATCGTGTCATGAAGGATCGAGAT
CGAACACAAGGTCTCATTGTCATTGATCCCCGGGCAGCTAGCTCCCAATA
CGTTATCATCATGCTACGCCGAGCCTCTGTAAGTTCTCTTCCTCTGACAA
CCGGTCGGGCACGCATCAGGGAAGGTGGTCGTTGGGCAAGTCTATGAAGG
GCGTTGGACACGAGGTTTAGAGGATGAGGGGCATGTCGGTGTCGGTGTCG
ATGTTGGTGTCGGGTTTGGTGCCGGTGTTGGTGTCGGTGTCGTCTCGGTG
CCCCTCCACCTCTCAACACCTCACGTACACCAGCGCCTGATCGCCATGTA
TCGTTGACGTGGGTGCCGCGTACAGGCTGGGGATACTCTCTTACGCTCAC
GCGATTGCGCTGGGCAGCTCATCTGTTCTCCCCCCGCGTCCAGAGTGAGT
GTTCGACCATCAATCCGCCTCTACCTGCATGGTGTATAGCATATGCAGTT
TCAACGTCTGGGAGATCGTTCACGTGCCGATAGTTCCTAATCCTATATTC
GCCATTCGGTCTGATTTTCGACTCTTGTCGATGCTTCTGATTAGCTTTTG
TAATATTGGAGATGGCGATGATGAAGTGCTGGTAGTGGTAATGATGGAAG
TGATGGCAGTCACATGATGAATTGGTGGTGGTGGTGGTGGTGGTGGTGAG
AGAGACGAAAATAATAGGATTAGGAGCAACGATGTTGAAAATCAGCACCA
AAAACACACCAGACCGCCGGCGTCTACTGTGACTAGAGAAGGAGAAACAC
AAGAAAGCACTGGTGACCCTAACAAAGATCCCTCGTCCCATCTGTTGGCT
TTTGTATCCTACAATGAACAGCGTCATCGCCTCTCAATCCTGTCAGGCAC
GATTCCTCAAGCTCTCCGTTCATTGCAAATTCCGAAGTTGTCGCCTCTTG
GCGACCTGGCAAGGAGCAAAGGCAGACTCCTAGGTCTCGTCATCAAGCGT
GCAACCAAGATGAGCTCCTTGAAGAAGGATTCAAGGGAGAGTAACGGGAA
GGAAACCGTGGAAGGCGCCCGAGCAGCGGCGGCGGGTGAAGAGACTATTC
CCCGCGAGTTCGAGAGCAAGAAATCCGAATCTCATGCGCTACTGGAAAGC
AAGAGAGCAGTAGGCGAAGGTTTGATGAGTTCTCTGCAGAAGGCGAGCCA
GTCATTGACAAGGGCTAGACAATCATTCGCAAGGGTCGGCCAGTCGTTGA
CGAGGCGAACCCAATCACCGGTGGGGGAGCAGGTGAAACATGCAGTTAAA
GCGATTGTCGAGGCGAACCCTTCAGAGGTCGGGAACAGGGCTAACGACCT
CGATAATAGCCTCTTGGCAGCAGTAAGCGATGGGATCAAAACTAAGGAAA
GGGTGAGGTCCATTTCAGGCATCGGAATGAAAAATCCAGACGGCGAGCAA
CTCAGCGACAAACCGGGGGCTGACGGATGCAGCGAAAGTGAGGTCGGGTG
CGAGGTGACACGACTCGCAGCTGAGGGATTTGATATAGAAAAAGACGACG
AGAAATTAGCGGCTGCTTCGCCAGAGAACAGCATCGCCATGGTGTCTCGT
TCTGGTCACTCAACGGTGCTCGGACCGCCAGCAAGTGCAGCAGGTGGGGC
CGATTCGGAGGGTGGTGATCGAGATGGGACACATAACAACGATGGCGATG
AACCTTTTCCATCTATGCTAGGCATCGGTGCGGATCAATCTACGGTGGCA
CCGATGGCGTCGGTGTCCGCCACATCGCAGTTTGACAGTCGAAAAAAATC
AAGGGCAACTTTTCCGCAGGGGGTTGGATCGCTCGATGACAAAGTCAAGG
GACCCAGGGTGAGCGAACGGAACTCGGTCCATGGGATCCACAGGGTCCAG
AGGGCATTGCACTCATGGACCACTACAGTAATCAATATATGACATGGACA
TGGAGATGCATCGAATGTGCACGGGTAAAGAGGGACCCCCAGTCATCCAA
CTCGAATCTGTCAGTATGTTGGCACCTGAAGCTCTGGACATTTGCACTAC
ACGGCATCCATCTCTAAACTTTAGAAGCGTTGGTATAGAACTTCAAATCG
TAAGAAAAGGGATGGATATCTTACCCATTTACTTGAATTGAAAGCGACAC
CAGTCGAAGGCCCGTTTGGTGACGATTTGAGACCCTGTAACTAAAAGAAC
CACGGTACTTCAAATCGTACCAAGCTTCATGTACTGTATCACCCATTTAC
TTGAACCTAATGCTTCATACTCTACACCAGTCAAAGCAGTCAAAGCAGTC
AAAGCAGTCAATGCAGCCCTGTTTTGTTACAATTTGGGCCCTCGTACTTC
CTTTCCAACTCCAACTCCAACTCGACTCGATTGAGACGATTAGCTCGAGA
AACGCTTCTGCTTCTATCACATGCCATGTCAAGGTACACAAGGTGGACAC
GAGGCACAAGATCGGATTGATGACCAAGGGCTTAATGTGTGATTGATCTG
CGGGGTATCACGAAAACCAAGTCCATCAGCTTGCTCAATTTCTCATTTTC
CCACTTTCCCGTTTTCCCGTTTGCCTGTTTGCCTGTCTATCCCCAACCCC
GTACTGACGTGACTCCACCCTCGTGATCGATTGTGGGACGCGAAGGCTAA
GCTCCTTCTCGAGATGGAGGGGCGGGGTCTTGGCAGAGACCCTGCATATC
ACAGGGATCACGGAGCAAAAGCGATTCGTTCTCCTTACTTGTGGCGAACC
CAAGGCTCATCAAGGGTAGCTGCGGAGTCCATCCCGGGATCTGGACAAAA
GGTGACTACGAATCTCAAGCATGTACTGTAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig101:593080..597660-

>mRNA_D-dichotoma_M_contig101.170.1 ID=mRNA_D-dichotoma_M_contig101.170.1|Name=mRNA_D-dichotoma_M_contig101.170.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2580bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:593080..597660- (Dictyota dichotoma ODC1387m male)
CTGGTTCTCGTGAGCAACGCTGACTTCATCGAGATGAAGATAACGCAGCT
GGTTCTCGTGAGCAACGCTGACTTCATCGAGATGAAGATAACGCAGGCTG
GGGATACTCTCTTACGCTCACGCGATTGCGCTGGGCAGCTCATCTGTTCT
CCCCCCGCGTCCAGAGCTGGGGATACTCTCTTACGCTCACGCGATTGCGC
TGGGCAGCTCATCTGTTCTCCCCCCGCGTCCAGACGTCATCGCCTCTCAA
TCCTGTCAGGCACGATTCCTCAAGCTCTCCGTTCATTGCAAATTCCGAAG
TTGTCGCCTCTTGGCGACCTGGCAAGGAGCAAAGGCAGACTCCTAGGTCT
CGTCATCAAGCGTGCAACCAAGATGAGCTCCTTGAAGAAGGATTCAAGGG
AGAGTAACGGGAAGGAAACCGTGGAAGGCGCCCGAGCAGCGGCGGCGGGT
GAAGAGACTATTCCCCGCGAGTTCGAGAGCAAGAAATCCGAATCTCATGC
GCTACTGGAAAGCAAGAGAGCAGTAGGCGAAGGTTTGATGAGTTCTCTGC
AGAAGGCGAGCCAGTCATTGACAAGGGCTAGACAATCATTCGCAAGGGTC
GGCCAGTCGTTGACGAGGCGAACCCAATCACCGGTGGGGGAGCAGGTGAA
ACATGCAGTTAAAGCGATTGTCGAGGCGAACCCTTCAGAGGTCGGGAACA
GGGCTAACGACCTCGATAATAGCCTCTTGGCAGCAGTAAGCGATGGGATC
AAAACTAAGGAAAGGGTGAGGTCCATTTCAGGCATCGGAATGAAAAATCC
AGACGGCGAGCAACTCAGCGACAAACCGGGGGCTGACGGATGCAGCGAAA
GTGAGGTCGGGTGCGAGGTGACACGACTCGCAGCTGAGGGATTTGATATA
GAAAAAGACGACGAGAAATTAGCGGCTGCTTCGCCAGAGAACAGCATCGC
CATGGTGTCTCGTTCTGGTCACTCAACGGTGCTCGGACCGCCAGCAAGTG
CAGCAGGTGGGGCCGATTCGGAGGGTGGTGATCGAGATGGGACACATAAC
AACGATGGCGATGAACCTTTTCCATCTATGCTAGGCATCGGTGCGGATCA
ATCTACGGTGGCACCGATGGCGTCGGTGTCCGCCACATCGCAGTTTGACA
GTCGAAAAAAATCAAGGGCAACTTTTCCGCAGGGGGTTGGATCGCTCGAT
GACAAAGTCAAGGGACCCAGGCGTCATCGCCTCTCAATCCTGTCAGGCAC
GATTCCTCAAGCTCTCCGTTCATTGCAAATTCCGAAGTTGTCGCCTCTTG
GCGACCTGGCAAGGAGCAAAGGCAGACTCCTAGGTCTCGTCATCAAGCGT
GCAACCAAGATGAGCTCCTTGAAGAAGGATTCAAGGGAGAGTAACGGGAA
GGAAACCGTGGAAGGCGCCCGAGCAGCGGCGGCGGGTGAAGAGACTATTC
CCCGCGAGTTCGAGAGCAAGAAATCCGAATCTCATGCGCTACTGGAAAGC
AAGAGAGCAGTAGGCGAAGGTTTGATGAGTTCTCTGCAGAAGGCGAGCCA
GTCATTGACAAGGGCTAGACAATCATTCGCAAGGGTCGGCCAGTCGTTGA
CGAGGCGAACCCAATCACCGGTGGGGGAGCAGGTGAAACATGCAGTTAAA
GCGATTGTCGAGGCGAACCCTTCAGAGGTCGGGAACAGGGCTAACGACCT
CGATAATAGCCTCTTGGCAGCAGTAAGCGATGGGATCAAAACTAAGGAAA
GGGTGAGGTCCATTTCAGGCATCGGAATGAAAAATCCAGACGGCGAGCAA
CTCAGCGACAAACCGGGGGCTGACGGATGCAGCGAAAGTGAGGTCGGGTG
CGAGGTGACACGACTCGCAGCTGAGGGATTTGATATAGAAAAAGACGACG
AGAAATTAGCGGCTGCTTCGCCAGAGAACAGCATCGCCATGGTGTCTCGT
TCTGGTCACTCAACGGTGCTCGGACCGCCAGCAAGTGCAGCAGGTGGGGC
CGATTCGGAGGGTGGTGATCGAGATGGGACACATAACAACGATGGCGATG
AACCTTTTCCATCTATGCTAGGCATCGGTGCGGATCAATCTACGGTGGCA
CCGATGGCGTCGGTGTCCGCCACATCGCAGTTTGACAGTCGAAAAAAATC
AAGGGCAACTTTTCCGCAGGGGGTTGGATCGCTCGATGACAAAGTCAAGG
GACCCAGGGCTAAGCTCCTTCTCGAGATGGAGGGGCGGGGTCTTGGCAGA
GACCCTGCATATCACAGGGATCACGGAGCAAAAGCGATTCGTTCTCCTTA
CTTGTGGCGAACCCAAGGCTCATCAAGGGTAGCTGCGGAGTCCATCCCGG
GATCTGGACAAAAGGTGACTACGAATCTCAAGCATGTACTGTAGGCTAAG
CTCCTTCTCGAGATGGAGGGGCGGGGTCTTGGCAGAGACCCTGCATATCA
CAGGGATCACGGAGCAAAAGCGATTCGTTCTCCTTACTTGTGGCGAACCC
AAGGCTCATCAAGGGTAGCTGCGGAGTCCATCCCGGGATCTGGACAAAAG
GTGACTACGAATCTCAAGCATGTACTGTAG
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