mRNA_D-dichotoma_M_contig101.169.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig101.169.1
Unique NamemRNA_D-dichotoma_M_contig101.169.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig101.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig101contigD-dichotoma_M_contig101:558315..562787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig101.169.1prot_D-dichotoma_M_contig101.169.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig101 558315..562787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.5313385-CDS-D-dichotoma_M_contig101:558314..5587721622927488.5313385-CDS-D-dichotoma_M_contig101:558314..558772Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 558315..558772 -
1690797997.809743-CDS-D-dichotoma_M_contig101:558314..5587721690797997.809743-CDS-D-dichotoma_M_contig101:558314..558772Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 558315..558772 -
1622927488.542408-CDS-D-dichotoma_M_contig101:560362..5604421622927488.542408-CDS-D-dichotoma_M_contig101:560362..560442Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 560363..560442 -
1690797997.8194919-CDS-D-dichotoma_M_contig101:560362..5604421690797997.8194919-CDS-D-dichotoma_M_contig101:560362..560442Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 560363..560442 -
1622927488.5542393-CDS-D-dichotoma_M_contig101:562755..5627871622927488.5542393-CDS-D-dichotoma_M_contig101:562755..562787Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 562756..562787 -
1690797997.832104-CDS-D-dichotoma_M_contig101:562755..5627871690797997.832104-CDS-D-dichotoma_M_contig101:562755..562787Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 562756..562787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig101.169.1

>prot_D-dichotoma_M_contig101.169.1 ID=prot_D-dichotoma_M_contig101.169.1|Name=mRNA_D-dichotoma_M_contig101.169.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=190bp
EATTYRECNERPSHASREGLSVSRCSRTWQSKDYLMSVMNPAERIPTCHE
LKLASRVERARILFEPGGYLPSSDVRSEPETNSPPDVQDFAVKASNSLAM
LDPNAQPPAITAQTISSNSGGESDVFQGASRGAALGKSEYNSQVARPACA
EQARKPNHKCKEELSRGVGAARHEAQTRTAISVVFNIIGG
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mRNA from alignment at D-dichotoma_M_contig101:558315..562787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig101.169.1 ID=mRNA_D-dichotoma_M_contig101.169.1|Name=mRNA_D-dichotoma_M_contig101.169.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4473bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:558315..562787- (Dictyota dichotoma ODC1387m male)
GAAGCCACAACATATCGAGAGTGCAACGAAAGGTACACTATACACAATCC
AGATCTGCTCCAGGAATGAATCGTCATTTTTCTACTGAGGTTAGTTGCAT
CCTCCAAGTGGCTGCATCGGAATCATCTACTCCTGTGAAGAGAAAGGATA
GAATATAATCTGAAGTGCTCCGATCATCCGCATCATGCCTGTTGCACGCA
GAGTCGTGACCTGGTTTAATGATGGCGTTAGCCTGGATGTTGCATTTACC
CTGTCTTTTCTCCTGTTTTCCATCAGTCGGAATTTCCCCTACCACGTGGT
ACTAAACCCTGATACTGTAAACATCGTTCGCCAAAGGAATCAGTCGACCT
GATTCAATCGACGTTTGACATAGTTGTGCGGGGGGTCGAATCCTGGTTTT
CGGAAGAGTGCTACCCCGCATTGATGGTACGAACTACGTGGAGAGAGGGG
TAATTCGTGAGTGTCGTCCGGGCATGGTCGGGGGCTATAGTTCGGCGGTA
AATCAAACGATAAGATGGGAATTCAGAAGTGTTTAACGGAGATATATTGA
AACTAGGTAATCCGTGTCAGGAACTCGAGGTTGTTTCGTGATGGCGGAGA
CAGGCAGAGAGACACATCGCCGTTCCTAGCTTCGTCGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGATGATTCATGCAGAAGCATTACGCGATGGAAGC
TTGCACACACGGCACTGACAAGAATGATGGCCGCACTCCGGTTGAGCGGC
AGTTTACGAGCTCTCTCGTTTCGCTTTTTTCGGTACGTTGCTACTCTAGT
AGAGGAGTAATGGTGGTGTACAACCACATAGTCACACCGCAGGCATTGAG
TTATTGTCTCATCCAGGATGTGATTATACACGATTTTCTCCACACAGGTA
ATCTTCGACATCTCTCTGAGACTTGGTGTAAGTAAAATAGACTTGGACGC
AAACGACTTTGGGATAGCAGGACAACTTCTCTAGGCGCTCGGAAGCGTAC
CTCAAAGACATGCATGAGGCGGTCACCTTATCGCCTTATCGTCTTATCCT
CTTCTCATTAGATTCATGCCCCCCCCATTGTGTACGCCTTTGATAGTTAC
CACGGGTGGGAGCTGGATGACGGGCCGATCCGAGGACCCTCAGTGCCACG
GAACGAATGGTGTAACACTCGACGGTGTAAGACAGGGACCCCGACCTCTT
TCAAGCCGTTGTCCCTCACGATGCAAAGAATCCTCTCCTGGGTAAGCATC
ACTAGACGTTCAAGAAAAAGTATTATTATTGGTTTTTCCGTCCTAGCCTA
CGCGACGGCAATGGCGAGGCAAAGCGAAAGCGGGAAGCAAAATGGCGATG
GAACTTTTGACACCCCCTCCACATCACTCAAGATACAGTCACCCTCAACG
CTATGGGTATTTTCACTTGCTGAACCGAAATCTCAGTGGAACCCAGTTTG
GGAACATAATCAATCTTGTTTGGACAAGAGGCTGTTGCCAATCATCAGCA
AGGAGACAGTTTAGCTAGAGTTTACTAGCTGCGTGTTCATATGACTTATT
TTTAACCATTTTTCGGAGCAAGCTCCCCATGCCAGGCTCCCGCAGTTCGT
TGCAAAGAAGACCCACTGTTCCCAACTAAAGGTTGTTGTTCAATCCGGCA
AACACATGCCGATTATTACCCTGTGGAGAACGCTTCGGTCCACTCAGCAT
CTTCTGAGTATACACTTTAGCCTCTTTCATGCCCAGGTGGCGATCCGTGG
TCGCACAAGCACCTAATATGTAGTGCCCCATTTGGTTCGCGGTCAGGTAG
AGATGGATGGTTACCATTGTATATTTTTCATATAGACTACAGTGTCATAG
TAATGATGATATAATGATTGTGATAATGATAATGATGATGATGATGATGA
TGATGATGATGATGATGATGATGATGATGATGGTGATGATGATGATGATA
TAATAATGATGATGCTATTGATGTCAACCCTTGGGAACTCATGAAGCGGT
ATGTTTACGTCCTGCCTTTGGTTGTACCTATTCTTGCATAGTACTTGCCG
CTGTAAACCCTCCCGGTCGTCCGCACCTGGCAATGTTTGCAGAATCCAAA
TCGTCACGAGGAGCTTGTTCCCATTTGTTCCGCAGTAGTGCCTGGGGTAA
ACCTGTTGTTAGAAACTCGATGCCTTCCCCGGAGACTTCACTCTCCACTT
CGCTCATGCCCTATGACTGAAAGTATGGTGGAATAGTTCCAATTCTGTTC
CGCTTTCTTGTTATTCCCTGGTTTCGACTCCCACTTCGTGTCTATGAACG
CCCACCTCGTACCTATGAACGCCCACGCCGTGCCTATGAACGAAGGCCTT
CACACGCGTCGAGGGAGGGGCTGAGCGTGAGTCGTTGTTCGAGGACCTGG
CAATCTAAAGACTACCTAATGAGTGGTGAGGAGCGCACGGGAACAACACT
GCTTGAGGCTGAAGTGGCGCGCTCGTCGCAACCGATGCTGCTAGGAAAAA
TCGCTCATTTGCCCTAAACTCTCACTACTTTATCACCCTCGACTTTCATG
TCGTTGGAGGAAAACTCGCGAACATCGAATTCCGCTTGCTTGTCATATTT
GGCTAAAGAAGTTATAGTTTATGGACACGAATGAGAGGATACTACTGCTG
AAATCGCGCGAGTGCTTGACCACTGAAAATGAACTTTTCTTGAGTTGTAA
AGATTGAGTAAGTTTGAGTCACCAAGGACAACAATTTCGCCTCCCTAAAA
GCCTTTGCCATGACCACGACTGATCCAACATCTAATGTCGCTGCCTGAAT
TCGCGTCGACCTCGTTGTCAACATTATATTTTGCATAAAAGAGTTCACAA
TCCAATTGTAGTTAATGACCGCTTGATATTTGGCTGAAAAGCTTCCACGA
GTTCCGTGCACCGGATCCGTTGCTGCCTTTGTTTGCTGAAACACTTTCCT
CGGGCCTGCTCCGAGTAATGAGCTCCTGGTTGAGACCTCTTCGGTCGCTC
TGCCCTATGCTTTTGCTGCGTACAGTACACTTCAAATCGTTACATAAACG
ACCTTTTTCTGATTAACTTTTGGATTTAGAGCATAGGCAACGAACGACGA
TCAATTTTGTTACAGGTTGAGCCCGCCGTGTAGCAGCTTCATAACGAAGG
AGGCGCGCCCATTGCCTGATCCACGATGGGCACGCCCATTGCCTCAACGA
TGAAACACTTCAATTCAGCTCCTCTCATGCACCTGGGAAGGCAGGAAACG
AGTATTCGAATACGTATTCCAGTCCAGAAGAACCATCTTCATGCGGAGCT
TTGTTATCTGTATTAACTTTCCATCCTGACGTGGATAGAGGGATTCGACC
ATATACCGTGCCCGAGGTTGCCATTCTGTTGGTTAAGCCTATTGGTTAAG
CCTATTGGTTAAGCCTATTGGAACACAGGTCAAACACAGATCAAACACAG
GTCAAACACATGTCAAACACAAACACAAACACAAACACAAACACAAACAC
CAGATTCGAGAGCCCGGCAGATTCGTGGCGAGGAACTCATTGACGCTTTC
AGCACGACAACGGAGTTGTCTTGAACCCCAATTGGATCGTGAACCCCTTT
TGGGATAATAGGGTGTTGAATGGTTTACATTGACCCTGAGACATGGCGAA
CATATTATTTGCTGGGAATCCCGAATGATGGTGGGCTGTTCCGTGTTCTG
CAGGTGTTGGTCAATCTATTCCATCATCTAGATGGGATCGAATGGAATAA
TATTCGACAAACCAAAGCGTCTCTCTGGGCAGGAACGTCTATAGGAGTCA
AAAATCGCTCTCCATCGGTCGGGAGTTTCTGCCTTCTTCATGTCTTCGAC
TTTCTTATTACTGGTTTGGAATGAGGTATCTCCACCATTTTCAAGTTGGA
ACCTGCGAGCCTGTGAATCCGCCAGTCTCCGCGGGAAGCCTCTGCCGGCA
GCACGTGATTTATGTATTCCATGCCTTTGGCCTCCCTGCTGAAACGTGTC
GTTTGGGTTCCATAGTCATGAACCCTGCCGAGCGCATCCCGACATGCCAC
GAGCTCAAGCTAGCATCGAGAGTGGAGAGAGCGCGAATCCTCTTTGAGCC
AGGAGGATACCTACCGTCCAGCGATGTACGCAGCGAGCCGGAGACAAATT
CACCTCCTGACGTTCAAGACTTTGCCGTGAAGGCATCAAATTCTTTGGCG
ATGCTCGACCCGAATGCGCAGCCTCCGGCGATCACGGCACAAACGATAAG
TTCGAACTCTGGAGGAGAGTCAGACGTTTTCCAAGGAGCTTCTCGAGGTG
CCGCGCTTGGGAAGAGCGAATACAACTCGCAGGTTGCTCGCCCTGCCTGT
GCCGAACAAGCAAGAAAACCGAATCACAAATGCAAGGAGGAGCTGTCGAG
GGGAGTGGGAGCCGCTCGGCACGAGGCACAAACAAGGACCGCCATTTCGG
TGGTGTTCAATATCATCGGGGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig101:558315..562787-

>mRNA_D-dichotoma_M_contig101.169.1 ID=mRNA_D-dichotoma_M_contig101.169.1|Name=mRNA_D-dichotoma_M_contig101.169.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1140bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:558315..562787- (Dictyota dichotoma ODC1387m male)
GAAGCCACAACATATCGAGAGTGCAACGAAAGGAAGCCACAACATATCGA
GAGTGCAACGAAAGGCCTTCACACGCGTCGAGGGAGGGGCTGAGCGTGAG
TCGTTGTTCGAGGACCTGGCAATCTAAAGACTACCTAATGAGTGGCCTTC
ACACGCGTCGAGGGAGGGGCTGAGCGTGAGTCGTTGTTCGAGGACCTGGC
AATCTAAAGACTACCTAATGAGTGTCATGAACCCTGCCGAGCGCATCCCG
ACATGCCACGAGCTCAAGCTAGCATCGAGAGTGGAGAGAGCGCGAATCCT
CTTTGAGCCAGGAGGATACCTACCGTCCAGCGATGTACGCAGCGAGCCGG
AGACAAATTCACCTCCTGACGTTCAAGACTTTGCCGTGAAGGCATCAAAT
TCTTTGGCGATGCTCGACCCGAATGCGCAGCCTCCGGCGATCACGGCACA
AACGATAAGTTCGAACTCTGGAGGAGAGTCAGACGTTTTCCAAGGAGCTT
CTCGAGGTGCCGCGCTTGGGAAGAGCGAATACAACTCGCAGGTTGCTCGC
CCTGCCTGTGCCGAACAAGCAAGAAAACCGAATCACAAATGCAAGGAGGA
GCTGTCGAGGGGAGTGGGAGCCGCTCGGCACGAGGCACAAACAAGGACCG
CCATTTCGGTGGTGTTCAATATCATCGGGGGCTCATGAACCCTGCCGAGC
GCATCCCGACATGCCACGAGCTCAAGCTAGCATCGAGAGTGGAGAGAGCG
CGAATCCTCTTTGAGCCAGGAGGATACCTACCGTCCAGCGATGTACGCAG
CGAGCCGGAGACAAATTCACCTCCTGACGTTCAAGACTTTGCCGTGAAGG
CATCAAATTCTTTGGCGATGCTCGACCCGAATGCGCAGCCTCCGGCGATC
ACGGCACAAACGATAAGTTCGAACTCTGGAGGAGAGTCAGACGTTTTCCA
AGGAGCTTCTCGAGGTGCCGCGCTTGGGAAGAGCGAATACAACTCGCAGG
TTGCTCGCCCTGCCTGTGCCGAACAAGCAAGAAAACCGAATCACAAATGC
AAGGAGGAGCTGTCGAGGGGAGTGGGAGCCGCTCGGCACGAGGCACAAAC
AAGGACCGCCATTTCGGTGGTGTTCAATATCATCGGGGGC
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