mRNA_D-dichotoma_M_contig101.168.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig101.168.1
Unique NamemRNA_D-dichotoma_M_contig101.168.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig101.168.1 vs. uniprot
Match: A0A6H5KJI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.030e-7
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   13 VAAFKGYWCHIISPVFFGRSVCSRRVNNAGGRRRQVHALAEDNNATAPS 159
            ++ ++GYWCH ISPVFFGRSV  RR+     RRRQ   +A    A  PS
Sbjct:  729 LSTWEGYWCHSISPVFFGRSVLGRRITKDMARRRQEEEVATAQLAATPS 777
[Close]
BLAST of mRNA_D-dichotoma_M_contig101.168.1 vs. uniprot
Match: D7G5G5_ECTSI (Serine/threonine-protein kinase Nek3 (NimA-related protein kinase 3) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G5_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.060e-6
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 1 
Query:    1 ENDAVAAFKGYWCHIISPVFFGRSVCSRRVNNAGGRRRQVHALAEDNNATAPSG 162
                ++ ++GYWCH +SPVFFGRSV  R +     RRRQ    A    A  PSG
Sbjct:  306 RGRVLSTWEGYWCHSLSPVFFGRSVLGRHMTKEMARRRQEEDAAAAQLAATPSG 359
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig101.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI9_9PHAE3.030e-751.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5G5_ECTSI1.060e-644.44Serine/threonine-protein kinase Nek3 (NimA-related... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig101contigD-dichotoma_M_contig101:552054..553401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.4367092-CDS-D-dichotoma_M_contig101:552053..5522361622927493.4367092-CDS-D-dichotoma_M_contig101:552053..552236Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 552054..552236 -
1690797999.0132558-CDS-D-dichotoma_M_contig101:552053..5522361690797999.0132558-CDS-D-dichotoma_M_contig101:552053..552236Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 552054..552236 -
1622927493.448043-CDS-D-dichotoma_M_contig101:553374..5534011622927493.448043-CDS-D-dichotoma_M_contig101:553374..553401Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 553375..553401 -
1690797999.0270944-CDS-D-dichotoma_M_contig101:553374..5534011690797999.0270944-CDS-D-dichotoma_M_contig101:553374..553401Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 553375..553401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig101.168.1prot_D-dichotoma_M_contig101.168.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig101 552054..553401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig101.168.1

>prot_D-dichotoma_M_contig101.168.1 ID=prot_D-dichotoma_M_contig101.168.1|Name=mRNA_D-dichotoma_M_contig101.168.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=70bp
ENDAVAAFKGYWCHIISPVFFGRSVCSRRVNNAGGRRRQVHALAEDNNAT
APSGSMDTESKLAITGRLC*
back to top

mRNA from alignment at D-dichotoma_M_contig101:552054..553401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig101.168.1 ID=mRNA_D-dichotoma_M_contig101.168.1|Name=mRNA_D-dichotoma_M_contig101.168.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1348bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:552054..553401- (Dictyota dichotoma ODC1387m male)
GAAAACGATGCCGTGGCTGCGTTCAAAGTGCGTAGTAGTGCAGCAGGACG
GCGCGAGCCCCCACACGGGAAAAAACAATCCAGCGGTTCTTCACTCAGCG
GGGATGGGGCGGGGTTGGACGGTAGAGCTTGTTACCCAGCCTGCCCAGTC
GCCTGACTTGAACGTCAACGACTTGGGCTTCTTCGCATCTCTAAAGTCAA
GGGTATGGGGGATGAACGCCAGTTCGATAGACGAGTTGGTGGAGACTATC
TTGGACCAGTACGAGAAGTACGATGGGGACACGTTGGAACGGGTTTGGCA
CAGCCTCTTTAAGGTTTACAACCAGACACTACATCAGTTGGGCAATAGCG
AATTTAGTGTGGAGCATACCGGGGTGACGGCGCGTGAGAGGGCAGGAACG
TTAGAATGGGTCGTAAAATATGATAAGGAGGCCTTCACGACGGCCTGGGA
CTACCTAGCATCAAGGCCCAGCGACGGCGAGGAGGGTTAACGATTTTGTT
TTTCCAACACTTTTTTTCCCCTGGAAAAGGGGCAAAATACGGCCTTTTTT
AGGCCGACTGGATTTTTTTCGGCCGTTCATGCATGCAGGGCGGTGTGTGC
AGAAAAAAAAACACGGGTTTCAACTCGACAAACAACGAAGATTTCAAAAA
CTATCGCCTGCGGCATCGGACACGGCTAAGGGTCCGTGTAATCATAACGG
ACTTTACTTATGGCACAGAGGAAGTATTATATTATATCTCCAACCCAACA
GGGTTGATTCGAAATTGGGTGTTGCCTTAGTCTTTGTATGGGTAAGGGCT
TTCAGGGGATGACAATGGTTTACATGATTATTCGAGGTTCTCGTAGTATG
ATACGCCGAGAAAGATTAGGGCTTCAGTTATAGCATCGCCCTCCGAGTTC
AAGCATCGCCCTCCGAGTTCAAGCATCGCCCTCCGAGTTCAAGCATCGCC
CTCCAGTTTCACGAATACTTTGTTCTATGACTTTGATCTGGTTGTGAGCT
CAGGATTATGGACGGACAAACTCGTTGCCTCAACTAATTGTGATTGTTGA
ACGGCAATAGCCTCCGTAACAATATAGAAAGGTGGTTTTCGCTTCCCTTC
GCGTGTCTCTCATGAAGCCTGTAAATAGAAACATAATCGACGTTAGAACA
TCCTTCGGTCCCCAGGGCTATTGGTGTCACATCATATCCCCGGTGTTCTT
CGGGCGAAGCGTATGCTCGCGTCGAGTCAATAATGCTGGCGGCCGTCGTC
GACAAGTACATGCACTTGCAGAAGACAACAATGCTACGGCACCATCCGGG
TCCATGGACACCGAGAGCAAATTGGCAATAACGGGTAGGTTATGCTGA
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig101:552054..553401-

>mRNA_D-dichotoma_M_contig101.168.1 ID=mRNA_D-dichotoma_M_contig101.168.1|Name=mRNA_D-dichotoma_M_contig101.168.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=420bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:552054..553401- (Dictyota dichotoma ODC1387m male)
GAAAACGATGCCGTGGCTGCGTTCAAAGAAAACGATGCCGTGGCTGCGTT
CAAAGGCTATTGGTGTCACATCATATCCCCGGTGTTCTTCGGGCGAAGCG
TATGCTCGCGTCGAGTCAATAATGCTGGCGGCCGTCGTCGACAAGTACAT
GCACTTGCAGAAGACAACAATGCTACGGCACCATCCGGGTCCATGGACAC
CGAGAGCAAATTGGCAATAACGGGTAGGTTATGCTGAGGCTATTGGTGTC
ACATCATATCCCCGGTGTTCTTCGGGCGAAGCGTATGCTCGCGTCGAGTC
AATAATGCTGGCGGCCGTCGTCGACAAGTACATGCACTTGCAGAAGACAA
CAATGCTACGGCACCATCCGGGTCCATGGACACCGAGAGCAAATTGGCAA
TAACGGGTAGGTTATGCTGA
back to top