mRNA_D-dichotoma_M_contig101.167.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig101.167.1
Unique NamemRNA_D-dichotoma_M_contig101.167.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig101.167.1 vs. uniprot
Match: A0A6H5KJI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-15
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:  610 IRAIPRLEIVQMLRRQQLLRTRALASGALRPIVSDDHFIKAFLSHPAS-EDGKLTEDEFVLFGLVAAEVHPWYK 828
            + ++PR+E+++MLR+Q  LR +A+AS ALRPI+ D HF KAFLSHP S E+  +TEDE  LFG V AEV  WYK
Sbjct: 1317 VASVPRVEVLRMLRKQGHLRQKAMASDALRPILIDQHFTKAFLSHPGSAEEAAVTEDELALFGSVVAEVDRWYK 1390
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig101.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJI9_9PHAE1.160e-1558.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig101contigD-dichotoma_M_contig101:501933..505189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size830
Cds size828
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig101.167.1prot_D-dichotoma_M_contig101.167.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig101 501935..505189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.4572165-CDS-D-dichotoma_M_contig101:501934..5020331622927488.4572165-CDS-D-dichotoma_M_contig101:501934..502033Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 501935..502033 -
1690797997.7676241-CDS-D-dichotoma_M_contig101:501934..5020331690797997.7676241-CDS-D-dichotoma_M_contig101:501934..502033Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 501935..502033 -
1622927488.4710567-CDS-D-dichotoma_M_contig101:503272..5038431622927488.4710567-CDS-D-dichotoma_M_contig101:503272..503843Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 503273..503843 -
1690797997.775915-CDS-D-dichotoma_M_contig101:503272..5038431690797997.775915-CDS-D-dichotoma_M_contig101:503272..503843Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 503273..503843 -
1622927488.4819493-CDS-D-dichotoma_M_contig101:504519..5046381622927488.4819493-CDS-D-dichotoma_M_contig101:504519..504638Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 504520..504638 -
1690797997.787233-CDS-D-dichotoma_M_contig101:504519..5046381690797997.787233-CDS-D-dichotoma_M_contig101:504519..504638Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 504520..504638 -
1622927488.4945157-CDS-D-dichotoma_M_contig101:505150..5051891622927488.4945157-CDS-D-dichotoma_M_contig101:505150..505189Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 505151..505189 -
1690797997.7990837-CDS-D-dichotoma_M_contig101:505150..5051891690797997.7990837-CDS-D-dichotoma_M_contig101:505150..505189Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 505151..505189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig101.167.1

>prot_D-dichotoma_M_contig101.167.1 ID=prot_D-dichotoma_M_contig101.167.1|Name=mRNA_D-dichotoma_M_contig101.167.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=276bp
EIVIGFELSLPRQSPSGRCFSRRQADPQDAIVRTSVNIQDGKRRDQETEE
LLRDVFRAARALLSGHTASLSQASTTDPNSLSMESSLESGADTSRPEQHG
GGDAASTGGGRNLGGNRQLVNNTLAADTMASAKTEQSTCTRATWKEDSGS
ELPRAIAPSSLTSKGDLWMKQTLKKEAEGIPGTDGMSDANVSDDERLKCP
RGDIRAIPRLEIVQMLRRQQLLRTRALASGALRPIVSDDHFIKAFLSHPA
SEDGKLTEDEFVLFGLVAAEVHPWYK
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mRNA from alignment at D-dichotoma_M_contig101:501933..505189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig101.167.1 ID=mRNA_D-dichotoma_M_contig101.167.1|Name=mRNA_D-dichotoma_M_contig101.167.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3257bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:501933..505189- (Dictyota dichotoma ODC1387m male)
GAAATCGTAATCGGATTCGAGCTCTCATTGCCTCGTCAGGTACGCCTCAC
CAATTTGGAAAGTTCACGAAGAATAATAACAAGATCTTCGTGTTATCGCG
AGGACACCTATCTTCTTTATTATGGCTTGACAGTTCAAGGCAGAAACTTG
CAAACGCTGTCCATGACGAGATTGAACTCAAGCGACCATGGTCCAACAGA
TTAGCCGTGTCAAATTAGCAAATCTCAGGCAATAATTCCCCAAAGAGGGG
GGGTTGATTTTACCACAGATCTTACCGCACACGGTGAGCGTATGCGATGT
ACTGTGTATGGTATCTTGTCAAAGGCTTCCCAGAAGCGGAAATTGTTTTC
GGTTGTTCCAAATTAGCCACCTTGGTCATGAAAAGCAGTTCGTTCCCGAT
AATGGATGAAACTTCCGATCCATCATCACAAACCACAAAAAAATATGCTG
AGGTTGATGTCAGGGAATTAATTTCTTCAATACCACGCACTAAGATCCAC
CGCCAGTGACAGTCGCCGTTCTGTTGGACGACTGACCTATCCCGCCAGAA
GTCACCTTCAGGTAGATGTTTTTCACGACGACAAGCAGATCCTCAAGATG
CGATTGTTCGCACCAGTGTCAACATTCAAGACGGCAAGAGGCGCGACCAA
GAAACAGAAGAGCTGCTACGGCGAGTATCTAAACAAAGGCTTGTGTAATG
CTGGATTGGGCGGCCTTCTCCATTTGTTAGTTGCCGGCTATGGTTTGCCC
AAGATTGATCATGCTCACTCGAGTCTATGTTCATTCAGTACCATGAGAAT
AGGGCCGATAGAGTCGAACGCTGGACAGGATTATCACACACTTAGTGCGA
TGCCGTGCGCTCATAGTACAAAAAAGACGGGATCCAAGGAGCACCAGATA
GTTATCATTTATTTTTCGTTTCTCCAATATTATCACACGCAAGGAGTCCA
GAGAAACCTCTGACCCCGCGACCACTCTTACAGGTGCTCGCCTCTCCTAG
ACCTTCAAGAACAGCAGTGTTGTAAGCAGTGAAGGCATTGTGATCGAGTC
TCGCGCGTCTCGCGAGTCAGGGGTGCATCTGCCAATAGGAGATTCGACAG
CACTGAAGTTATCACCTCCATATTGCCCTTCGATTATGTCCATTGCTAGT
CTTGTGATAATAGACGAAGTAGAGGAAGATATCACCACGGGCGGAGCGGT
CATACACACCACCCCGAGAAACCTCAAGATAGCTCAATTCCATCTGCTGG
CAAAATTAGGAGTTATGAAGAAGTCATTGACTTGATTCTGAATTTCCAAC
ATCTAAGACTTCGTGAAAAAAAATCTGATTTGTTTCTTCTCAACAGGGAT
GTCTTTCGCGCAGCGCGCGCATTGTTATCAGGCCATACGGCGTCTCTGAG
CCAGGCATCGACAACCGATCCAAATTCATTGAGCATGGAATCAAGCCTGG
AGTCTGGTGCAGATACGAGTCGTCCGGAACAACATGGAGGAGGTGATGCA
GCCAGCACTGGCGGGGGCAGGAACCTTGGAGGGAATCGACAGTTGGTGAA
CAACACATTGGCCGCAGACACAATGGCGTCAGCAAAGACTGAACAGTCGA
CGTGTACACGCGCCACGTGGAAGGAAGATTCAGGCTCTGAATTGCCCAGG
GCTATCGCGCCGAGCTCATTGACATCGAAGGGTGACTTGTGGATGAAGCA
AACGCTGAAGAAGGAAGCAGAGGGCATACCTGGAACGGATGGGATGTCCG
ACGCTAACGTTTCGGACGATGAGCGTTTAAAATGCCCCAGAGGGGATATT
CGTGCGATACCAAGGCTGGAGATTGTGCAGATGCTGCGCCGACAGCAGTT
ATTAAGGACGAGGGCTCTGGCGTCCGGTGCCTTACGCCCCATCGTATCTG
ACGATCATTTCATAAAGGTCCGGGAGAGTCTTTCAAGGCCAGACAGGCAG
CCCAATGCAGGGCAGGTCGCGTAACAAGAGTCATTCGAATTATCCTTGTG
CCAAGCGTGAACTTCACAGGATTGTTTTCAAGTGCTAGGAGAAGCATCGT
AATCTGAACGAGCGACAAGCCAACCATACGTACAACGACAACGGGATCGA
CATGAAAACAAGCAGGTTATTCGTTAAGAAATAACGCTGTATGCTTTCGA
AATACGGAGGACGCGCGGTTCTACCCCACTTCCCTCCCTGAAAGTCCCAG
TATAAACACTGGCCCTTCGAATCGACCTGTCGGGCGTGAGCTATGATGGT
GTCTTTGTGGAGCGATGAACCTGAAGAACGCGATTTTCGTGGTATCGGAA
TCCTCATATATTTCTTTATATAAATATATCGGGAATCATGCCTTTTTCAA
TGTCATCGGCAGAACACTGAATTATGTAGCTTATTCATCCCCCGAAAGCC
CTTGCCCGTACGAACCACGAAGCCCTAAGCTTTTGAAGCGATACCATTTA
GCGGGAGAATCATCGTAAATTTTGCATATGTAAGCGACCTGGAACCACAT
TCGTAACTTCCGCATAAATCCCATTATATCTCGCGCCCAACAGGGTAGGT
TTAAACGCTGATGGTGCCATAGTGCCCGTATGGGAAACGTCTTCCATCTG
GTGATGATTCTATTCGGCTATTCGGAGTTTCTTGTCGTTAAGCTGCCGAA
ATAGGCGTAGGTTCTGATTATAGGTTAGGACTCCGCGGTAACGAAAATCG
TATTCATTTTGGTTCCAGATATTTTGTCATGTCTCTTTCAGGTCTTGTCT
AAAATGACCGAATCGAATTCTCCATCTCGCCTTCTTTAATTAGATGCTAG
TAGAACTGTATATATGTATGGCAAGGGCTTCTAAGGTGAGTTATTGTCGT
TCTTGATCGCTCGAAAGATTGAAAGATTGTCTCGATATACGCTTCTTGTA
GAATGTAGAACGCCAAAAGAAAACTCTTTTTCGAATATAACTTGAATTGC
ATATATTCCAGTTGCTCGAATATTCGTTCGCTACGTGATTTGATCGATGC
ACGATAGCTCATGTACTCTAGTACCAGCGCGCGTTGCCCCTGAGCGTTCT
TGCATTTGTATTATTCTTGGAATGACGCCCAAAATACACAGTAGCCAGCT
GCGTTTGACCCCTGCATGTCTCAAAGTTTTCTTCGGATTTTGCTCAACGT
TGACAGGCGTTCCTGTCTCATCCAGCTTCGGAAGATGGTAAGCTCACAGA
GGATGAATTCGTCCTTTTCGGGCTGGTGGCAGCGGAGGTTCATCCCTGGT
ATAAGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig101:501933..505189-

>mRNA_D-dichotoma_M_contig101.167.1 ID=mRNA_D-dichotoma_M_contig101.167.1|Name=mRNA_D-dichotoma_M_contig101.167.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1656bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:501933..505189- (Dictyota dichotoma ODC1387m male)
GAAATCGTAATCGGATTCGAGCTCTCATTGCCTCGTCAGGAAATCGTAAT
CGGATTCGAGCTCTCATTGCCTCGTCAGTCACCTTCAGGTAGATGTTTTT
CACGACGACAAGCAGATCCTCAAGATGCGATTGTTCGCACCAGTGTCAAC
ATTCAAGACGGCAAGAGGCGCGACCAAGAAACAGAAGAGCTGCTACGTCA
CCTTCAGGTAGATGTTTTTCACGACGACAAGCAGATCCTCAAGATGCGAT
TGTTCGCACCAGTGTCAACATTCAAGACGGCAAGAGGCGCGACCAAGAAA
CAGAAGAGCTGCTACGGGATGTCTTTCGCGCAGCGCGCGCATTGTTATCA
GGCCATACGGCGTCTCTGAGCCAGGCATCGACAACCGATCCAAATTCATT
GAGCATGGAATCAAGCCTGGAGTCTGGTGCAGATACGAGTCGTCCGGAAC
AACATGGAGGAGGTGATGCAGCCAGCACTGGCGGGGGCAGGAACCTTGGA
GGGAATCGACAGTTGGTGAACAACACATTGGCCGCAGACACAATGGCGTC
AGCAAAGACTGAACAGTCGACGTGTACACGCGCCACGTGGAAGGAAGATT
CAGGCTCTGAATTGCCCAGGGCTATCGCGCCGAGCTCATTGACATCGAAG
GGTGACTTGTGGATGAAGCAAACGCTGAAGAAGGAAGCAGAGGGCATACC
TGGAACGGATGGGATGTCCGACGCTAACGTTTCGGACGATGAGCGTTTAA
AATGCCCCAGAGGGGATATTCGTGCGATACCAAGGCTGGAGATTGTGCAG
ATGCTGCGCCGACAGCAGTTATTAAGGACGAGGGCTCTGGCGTCCGGTGC
CTTACGCCCCATCGTATCTGACGATCATTTCATAAAGGGATGTCTTTCGC
GCAGCGCGCGCATTGTTATCAGGCCATACGGCGTCTCTGAGCCAGGCATC
GACAACCGATCCAAATTCATTGAGCATGGAATCAAGCCTGGAGTCTGGTG
CAGATACGAGTCGTCCGGAACAACATGGAGGAGGTGATGCAGCCAGCACT
GGCGGGGGCAGGAACCTTGGAGGGAATCGACAGTTGGTGAACAACACATT
GGCCGCAGACACAATGGCGTCAGCAAAGACTGAACAGTCGACGTGTACAC
GCGCCACGTGGAAGGAAGATTCAGGCTCTGAATTGCCCAGGGCTATCGCG
CCGAGCTCATTGACATCGAAGGGTGACTTGTGGATGAAGCAAACGCTGAA
GAAGGAAGCAGAGGGCATACCTGGAACGGATGGGATGTCCGACGCTAACG
TTTCGGACGATGAGCGTTTAAAATGCCCCAGAGGGGATATTCGTGCGATA
CCAAGGCTGGAGATTGTGCAGATGCTGCGCCGACAGCAGTTATTAAGGAC
GAGGGCTCTGGCGTCCGGTGCCTTACGCCCCATCGTATCTGACGATCATT
TCATAAAGGCGTTCCTGTCTCATCCAGCTTCGGAAGATGGTAAGCTCACA
GAGGATGAATTCGTCCTTTTCGGGCTGGTGGCAGCGGAGGTTCATCCCTG
GTATAAGGCGTTCCTGTCTCATCCAGCTTCGGAAGATGGTAAGCTCACAG
AGGATGAATTCGTCCTTTTCGGGCTGGTGGCAGCGGAGGTTCATCCCTGG
TATAAG
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