mRNA_D-dichotoma_M_contig101.159.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig101.159.1
Unique NamemRNA_D-dichotoma_M_contig101.159.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig101.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig101contigD-dichotoma_M_contig101:71421..72039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size464
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig101.159.1prot_D-dichotoma_M_contig101.159.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig101 71580..71968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.340105-UTR-D-dichotoma_M_contig101:71420..715791622927488.340105-UTR-D-dichotoma_M_contig101:71420..71579Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig101 71421..71579 -
1690797997.7255833-UTR-D-dichotoma_M_contig101:71420..715791690797997.7255833-UTR-D-dichotoma_M_contig101:71420..71579Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig101 71421..71579 -
1622927488.3797796-UTR-D-dichotoma_M_contig101:71968..720391622927488.3797796-UTR-D-dichotoma_M_contig101:71968..72039Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig101 71969..72039 -
1690797997.7577055-UTR-D-dichotoma_M_contig101:71968..720391690797997.7577055-UTR-D-dichotoma_M_contig101:71968..72039Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig101 71969..72039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.3527994-CDS-D-dichotoma_M_contig101:71579..717621622927488.3527994-CDS-D-dichotoma_M_contig101:71579..71762Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 71580..71762 -
1690797997.736692-CDS-D-dichotoma_M_contig101:71579..717621690797997.736692-CDS-D-dichotoma_M_contig101:71579..71762Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 71580..71762 -
1622927488.367569-CDS-D-dichotoma_M_contig101:71917..719681622927488.367569-CDS-D-dichotoma_M_contig101:71917..71968Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 71918..71968 -
1690797997.747666-CDS-D-dichotoma_M_contig101:71917..719681690797997.747666-CDS-D-dichotoma_M_contig101:71917..71968Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 71918..71968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig101.159.1

>prot_D-dichotoma_M_contig101.159.1 ID=prot_D-dichotoma_M_contig101.159.1|Name=mRNA_D-dichotoma_M_contig101.159.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=78bp
MTALKSQRRLESPVLGSPSKDFRGGVVNIKEFLSNAKNSVSFSISGVVQM
GTELFAVYEVGQDSEESGSDDMEGDSS*
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mRNA from alignment at D-dichotoma_M_contig101:71421..72039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig101.159.1 ID=mRNA_D-dichotoma_M_contig101.159.1|Name=mRNA_D-dichotoma_M_contig101.159.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=619bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:71421..72039- (Dictyota dichotoma ODC1387m male)
AGACTTCAGCACTGTCGACGACTTCATCCCTGTGCCGTTAGAAGGTAGTT
TTGAGGTTTACGATAGCTCCGATGACTGCCTTGAAGTCTCAAAGAAGACT
GGAGTCCCCCGTTTTAGGGTCTGCGACAATGTGTCCCCTCTTCTGTCCAA
AAGCGAAGTGGCCAGGCCTACGTCCGCGCTGTATCTAGTCCCTGACCGTA
CTTGTCCTCTCTTCTACATGAACTCGTCGGGGGGAGACGTGGACGTAGAG
AACCTCAAGGCAAGGATTATCCTCAAGCCTAGCAAGGACTTTAGAGGAGG
GGTGGTTAACATCAAGGAGTTTCTTAGTAACGCGAAAAACTCCGTGAGCT
TTAGTATCAGTGGGGTCGTACAAATGGGCACCGAACTTTTCGCCGTTTAC
GAGGTCGGGCAGGATAGCGAAGAAAGTGGCAGTGATGATATGGAAGGAGA
CTCTTCGTAGGGGGGATGCTACGATTGTACACTAGATATCTTGTCGTTTT
CGATCGAGAAAGTTGCTGATCTGGAAGGTGACGTGGAGACTACGACCTGA
TGTACATCTTCTGCTGTTTTTTTGGGGGTAGTGCTGACGGTTTATTGAGG
AAACCTCGCAGTATCGGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig101:71421..72039-

>mRNA_D-dichotoma_M_contig101.159.1 ID=mRNA_D-dichotoma_M_contig101.159.1|Name=mRNA_D-dichotoma_M_contig101.159.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=468bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:71421..72039- (Dictyota dichotoma ODC1387m male)
ATGACTGCCTTGAAGTCTCAAAGAAGACTGGAGTCCCCCGTTTTAGGGTC
TATGACTGCCTTGAAGTCTCAAAGAAGACTGGAGTCCCCCGTTTTAGGGT
CTCCTAGCAAGGACTTTAGAGGAGGGGTGGTTAACATCAAGGAGTTTCTT
AGTAACGCGAAAAACTCCGTGAGCTTTAGTATCAGTGGGGTCGTACAAAT
GGGCACCGAACTTTTCGCCGTTTACGAGGTCGGGCAGGATAGCGAAGAAA
GTGGCAGTGATGATATGGAAGGAGACTCTTCGTAGCCTAGCAAGGACTTT
AGAGGAGGGGTGGTTAACATCAAGGAGTTTCTTAGTAACGCGAAAAACTC
CGTGAGCTTTAGTATCAGTGGGGTCGTACAAATGGGCACCGAACTTTTCG
CCGTTTACGAGGTCGGGCAGGATAGCGAAGAAAGTGGCAGTGATGATATG
GAAGGAGACTCTTCGTAG
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