mRNA_D-dichotoma_M_contig101.158.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig101.158.1
Unique NamemRNA_D-dichotoma_M_contig101.158.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig101.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig101contigD-dichotoma_M_contig101:39850..40637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size232
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig101.158.1prot_D-dichotoma_M_contig101.158.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig101 39950..40637 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.273135-UTR-D-dichotoma_M_contig101:39849..399491622927488.273135-UTR-D-dichotoma_M_contig101:39849..39949Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig101 39850..39949 +
1690797997.6890888-UTR-D-dichotoma_M_contig101:39849..399491690797997.6890888-UTR-D-dichotoma_M_contig101:39849..39949Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig101 39850..39949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.288434-CDS-D-dichotoma_M_contig101:39949..400181622927488.288434-CDS-D-dichotoma_M_contig101:39949..40018Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 39950..40018 +
1690797997.7023044-CDS-D-dichotoma_M_contig101:39949..400181690797997.7023044-CDS-D-dichotoma_M_contig101:39949..40018Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 39950..40018 +
1622927488.3001764-CDS-D-dichotoma_M_contig101:40574..406371622927488.3001764-CDS-D-dichotoma_M_contig101:40574..40637Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 40575..40637 +
1690797997.7135203-CDS-D-dichotoma_M_contig101:40574..406371690797997.7135203-CDS-D-dichotoma_M_contig101:40574..40637Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig101 40575..40637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig101.158.1

>prot_D-dichotoma_M_contig101.158.1 ID=prot_D-dichotoma_M_contig101.158.1|Name=mRNA_D-dichotoma_M_contig101.158.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=44bp
MNHPSSFAVKEGTLCGGPGHVTRNGRVSLRKRRPCEGLAEPNEE
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mRNA from alignment at D-dichotoma_M_contig101:39850..40637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig101.158.1 ID=mRNA_D-dichotoma_M_contig101.158.1|Name=mRNA_D-dichotoma_M_contig101.158.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=788bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:39850..40637+ (Dictyota dichotoma ODC1387m male)
CGCCACATGATGCAGTCAGCACCACCAGGACAGACTATCCACGCCAAACG
TAGTAGGTTGCGCATGTCCGACGAATCAATTGCACTTGATTTTCACTAGA
ATGAATCATCCGTCATCGTTTGCAGTCAAAGAGGGAACCTTGTGTGGAGG
ACCAGGGCACGTCACCCGGGTGAAAAAAGCATTGAGATGACCGTGAAACA
AGCCTCATCCCTTTCGAACTTTATGGTTCTCGCGGATAGTAATTCAGAGT
CGCCTCAGCGAACATAAAGTTAACCACACAGAGAGTTTTTTCGGAGGTTG
TGCCATGAAGTTAGAGCCGGAAGGTCTAATGCGCCCCGTCGAGCAGGAGG
TGCTTCAGCGTGGTGAGAGTCTCGCAACCACCAGTGCTCTGGACCAAATG
ACACCCCAAGCATCTTAATGTATAGACCACGTCACTACAGCACTAGGCGT
TTACTTCCCCAACAACGGCACCGCAACTAGCGATCATTCTAAGCCAGACA
CAACAATAGTATACCCCACACGCAACATTCTGTCGCTCAAGGCCCCAAGA
AGCTTTAGTCCCTCATAATGATGAGGAGAGTATCCGTCAGTCGCCACTGC
CTTGTACACACCCGTCCTCCATGACGAACGCAAGTCACAGCTTGGTGAAA
TGGGAACAAGTCAAGCAATAAATAACAGCAGTATATGAAAAGCAGCCACT
CTTCGTCTTCATTGCTAATTGGCAGAATGGGAGGGTCTCACTGAGGAAGA
GAAGGCCGTGCGAAGGGCTTGCAGAGCCAAACGAGGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig101:39850..40637+

>mRNA_D-dichotoma_M_contig101.158.1 ID=mRNA_D-dichotoma_M_contig101.158.1|Name=mRNA_D-dichotoma_M_contig101.158.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=264bp|location=Sequence derived from alignment at D-dichotoma_M_contig101:39850..40637+ (Dictyota dichotoma ODC1387m male)
ATGAATCATCCGTCATCGTTTGCAGTCAAAGAGGGAACCTTGTGTGGAGG
ACCAGGGCACGTCACCCGGATGAATCATCCGTCATCGTTTGCAGTCAAAG
AGGGAACCTTGTGTGGAGGACCAGGGCACGTCACCCGGAATGGGAGGGTC
TCACTGAGGAAGAGAAGGCCGTGCGAAGGGCTTGCAGAGCCAAACGAGGA
GAATGGGAGGGTCTCACTGAGGAAGAGAAGGCCGTGCGAAGGGCTTGCAG
AGCCAAACGAGGAG
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