mRNA_D-dichotoma_M_contig1000.105.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1000.105.1
Unique NamemRNA_D-dichotoma_M_contig1000.105.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A0S3R1L9_PHAAN (Uncharacterized protein n=2 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0S3R1L9_PHAAN)

HSP 1 Score: 54.3 bits (129), Expect = 9.090e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTK 135
            NP+   R+ HID RFHFI +K+K+G+V + HVE KKQ AD  TK
Sbjct:   68 NPVNHERSKHIDVRFHFIREKLKEGSVELEHVESKKQIADIFTK 111
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A0L9VLM2_PHAAN (Uncharacterized protein n=2 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VLM2_PHAAN)

HSP 1 Score: 53.5 bits (127), Expect = 1.650e-6
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTKNSSEEILRQHRRTL 177
            NP+   R+ HID RFHFI +K+K+G+V + HV  K+Q AD  TK     I  ++R+ +
Sbjct:   62 NPVYHERSKHIDVRFHFIREKIKEGSVELEHVGTKQQIADIFTKPLPAVIFHEYRKLI 119
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A0S3TD48_PHAAN (Uncharacterized protein n=1 Tax=Vigna angularis var. angularis TaxID=157739 RepID=A0A0S3TD48_PHAAN)

HSP 1 Score: 54.3 bits (129), Expect = 2.780e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTK 135
            NP+   R+ HID RFHFI +K+K+G+V + HVE KKQ AD  TK
Sbjct:  139 NPVNHERSKHIDVRFHFIREKLKEGSVELEHVESKKQIADIFTK 182
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A151RAK8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAK8_CAJCA)

HSP 1 Score: 55.1 bits (131), Expect = 3.490e-6
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTK 135
            NPI  +R+ HID R+HFI +KVK+G V + HVE KKQ AD  TK
Sbjct: 1247 NPISHDRSKHIDIRYHFIREKVKEGVVELEHVESKKQIADIFTK 1290
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: UPI0008A0EADB (LOW QUALITY PROTEIN: uncharacterized protein LOC108951439 n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=UPI0008A0EADB)

HSP 1 Score: 54.7 bits (130), Expect = 4.220e-6
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTKNSSEEILRQHRRTLLKLAGW*FSKRLETRDLWYYDSL 246
            NP+   R+ HID RFHFI   +K+  V++ HV+  +Q AD LTK    EI +Q RR L  L G       +   L Y  S+
Sbjct:  346 NPVYHERSKHIDTRFHFIRDHIKNKEVKIHHVKTSEQVADILTKPLKFEIFQQLRRKLGMLDGTSLRGENKIESLSYSSSI 426
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A6H5JJW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.570e-6
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 DNPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTKNSSEEILRQHRRTLLKL 186
            +NP  + R+ HID RFHFIC+  K G +   +V   +Q AD LTK    E L+ H++ L+ L
Sbjct:  319 ENPFSSARSEHIDVRFHFICELFKSGKIAAEYVPTGEQHADMLTKVFGREKLKYHQKALMNL 380
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A8J5HJR4_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HJR4_ZINOF)

HSP 1 Score: 54.3 bits (129), Expect = 6.150e-6
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTKNSSEEILRQHRRTL 177
            NP+   R+ HID RFHFI ++VK+G + + HVE + QAAD  TK  S  +L   +R +
Sbjct:  630 NPVNHGRSKHIDVRFHFIREQVKEGKIELEHVESRTQAADVFTKPLSTTLLENCKRLI 687
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BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A151UFD3_CAJCA (Copia protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UFD3_CAJCA)

HSP 1 Score: 52.0 bits (123), Expect = 9.010e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTK 135
            NPI   R+ HID RFHFI +KVK+G+V + HV  K+Q AD  TK
Sbjct:   80 NPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEQVADIFTK 123
[Close]
BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: A0A151TL22_CAJCA (Copia protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TL22_CAJCA)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTK 135
            NPI   R+ HID RFHFI +KVK+G+V + HV  K+Q AD  TK
Sbjct:  107 NPINHERSKHIDVRFHFIKEKVKEGSVELEHVGSKEQVADIFTK 150
[Close]
BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Match: UPI001FB0DE07 (secreted RxLR effector protein 161-like n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0DE07)

HSP 1 Score: 52.8 bits (125), Expect = 1.450e-5
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 NPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTKNSSEEILRQHRRTL 177
            NPI   R+ HID RFHFI ++VK+G V + HVE + QAAD  TK     +L   +R +
Sbjct:  187 NPINHGRSKHIDVRFHFIREQVKEGKVELEHVESRAQAADIFTKPLPTTLLESCKRLI 244
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1000.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A0S3R1L9_PHAAN9.090e-756.82Uncharacterized protein n=2 Tax=Phaseolus angulari... [more]
A0A0L9VLM2_PHAAN1.650e-643.10Uncharacterized protein n=2 Tax=Phaseolus angulari... [more]
A0A0S3TD48_PHAAN2.780e-656.82Uncharacterized protein n=1 Tax=Vigna angularis va... [more]
A0A151RAK8_CAJCA3.490e-659.09Retrovirus-related Pol polyprotein from transposon... [more]
UPI0008A0EADB4.220e-639.51LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A6H5JJW3_9PHAE5.570e-641.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5HJR4_ZINOF6.150e-644.83Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A151UFD3_CAJCA9.010e-656.82Copia protein n=1 Tax=Cajanus cajan TaxID=3821 Rep... [more]
A0A151TL22_CAJCA1.090e-556.82Copia protein n=1 Tax=Cajanus cajan TaxID=3821 Rep... [more]
UPI001FB0DE071.450e-546.55secreted RxLR effector protein 161-like n=2 Tax=Im... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1000contigD-dichotoma_M_contig1000:188389..188775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927480.0549486-CDS-D-dichotoma_M_contig1000:188388..1885861622927480.0549486-CDS-D-dichotoma_M_contig1000:188388..188586Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1000 188389..188586 +
1690797991.776157-CDS-D-dichotoma_M_contig1000:188388..1885861690797991.776157-CDS-D-dichotoma_M_contig1000:188388..188586Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1000 188389..188586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927480.0711608-UTR-D-dichotoma_M_contig1000:188586..1887751622927480.0711608-UTR-D-dichotoma_M_contig1000:188586..188775Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1000 188587..188775 +
1690797991.7912722-UTR-D-dichotoma_M_contig1000:188586..1887751690797991.7912722-UTR-D-dichotoma_M_contig1000:188586..188775Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1000 188587..188775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1000.105.1prot_D-dichotoma_M_contig1000.105.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1000 188389..188586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1000.105.1

>prot_D-dichotoma_M_contig1000.105.1 ID=prot_D-dichotoma_M_contig1000.105.1|Name=mRNA_D-dichotoma_M_contig1000.105.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=66bp
DNPICTNRANHIDARFHFICQKVKDGTVRVVHVEYKKQAADGLTKNSSEE
ILRQHRRTLLKLAGW*
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mRNA from alignment at D-dichotoma_M_contig1000:188389..188775+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1000.105.1 ID=mRNA_D-dichotoma_M_contig1000.105.1|Name=mRNA_D-dichotoma_M_contig1000.105.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=387bp|location=Sequence derived from alignment at D-dichotoma_M_contig1000:188389..188775+ (Dictyota dichotoma ODC1387m male)
GACAACCCTATTTGCACGAATAGGGCTAACCATATTGATGCAAGGTTTCA
TTTTATTTGCCAGAAGGTGAAGGATGGAACAGTAAGAGTAGTCCACGTTG
AATATAAGAAGCAGGCGGCTGATGGTTTGACGAAGAATTCGTCTGAGGAG
ATCCTCAGACAGCATCGCAGGACTTTGTTGAAGTTGGCGGGCTGGTGATT
TTCGAAGCGCCTGGAGACAAGGGACCTATGGTACTATGATTCACTCACCA
AGGGGGTGTCGAGTTAAGTGGTTCGTGAACATGGTACATGACCAATGGGA
ACATTCTAGGAAGAATAATGTGTTAGGAGCTCGGTATAACGGAAGTACCG
TAGAATGATCAAGTGAGAAAAGCGGAGAAAACGGGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1000:188389..188775+

>mRNA_D-dichotoma_M_contig1000.105.1 ID=mRNA_D-dichotoma_M_contig1000.105.1|Name=mRNA_D-dichotoma_M_contig1000.105.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=396bp|location=Sequence derived from alignment at D-dichotoma_M_contig1000:188389..188775+ (Dictyota dichotoma ODC1387m male)
GACAACCCTATTTGCACGAATAGGGCTAACCATATTGATGCAAGGTTTCA
TTTTATTTGCCAGAAGGTGAAGGATGGAACAGTAAGAGTAGTCCACGTTG
AATATAAGAAGCAGGCGGCTGATGGTTTGACGAAGAATTCGTCTGAGGAG
ATCCTCAGACAGCATCGCAGGACTTTGTTGAAGTTGGCGGGCTGGTGAGA
CAACCCTATTTGCACGAATAGGGCTAACCATATTGATGCAAGGTTTCATT
TTATTTGCCAGAAGGTGAAGGATGGAACAGTAAGAGTAGTCCACGTTGAA
TATAAGAAGCAGGCGGCTGATGGTTTGACGAAGAATTCGTCTGAGGAGAT
CCTCAGACAGCATCGCAGGACTTTGTTGAAGTTGGCGGGCTGGTGA
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