mRNA_D-dichotoma_M_contig1000.102.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1000.102.1
Unique NamemRNA_D-dichotoma_M_contig1000.102.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.680e-17
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -1
Query:    6 VDWNVFHASVGHMSKELLAASAKSTGVTLTGHLYPCEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 302
            +D N FH    H  + LL  +AK  G  L G ++ C GC  +K IR+ I   T+ RS+K+LGRV+ DL G K +   GGK Y ++ +DD +R   +Y+L
Sbjct:  130 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFL 228          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A6H5GLM3_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GLM3_9HEMI)

HSP 1 Score: 67.8 bits (164), Expect = 3.840e-10
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = -1
Query:    3 EVDWNVFHASVGHMSKELLAASAKSTGVTLTGHLYP--CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYLA 305
            E+ W+   A + H S +LL     S G++ T    P  CE C+  K  R+P P      ++++L  V+ DL GP Q     G RY +VF DD +R + VY+LA
Sbjct:  126 EMVWHQRLAHLNHFSMKLLRDELAS-GISYTSEKEPKLCESCIRGKHARKPFPKEKTKLADQKLALVHTDLCGPFQVNSWSGARYMLVFLDDHTRKLWVYFLA 227          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A6H5JV54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV54_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.170e-10
Identity = 40/90 (44.44%), Postives = 45/90 (50.00%), Query Frame = -1
Query:  132 VSESVCETPDKPGEPPDQACRAVVAPARTPPKEVDWNVFHASVGHMSKELLAASAKSTGVTLTGHLYPCEGCLAAKGIRRPIPNTTETRS 401
            V+E      D  GE      R  V  AR     VD N FH + GH  + LL   AK  G TL G L  C GCLAAKGI +PIPN T  R+
Sbjct:  306 VAEEALVVGDISGECHKVVGRGGVEQARRGSTPVDINDFHCAHGHSHEVLLRTMAKQQGTTLVGELRECLGCLAAKGISKPIPNKTSIRA 395          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A225UGU7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGU7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.290e-9
Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = -1
Query:    6 DWNVFHASVGHMSKELLAASA-KSTGVTLTGHLYP--CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299
            +W ++HA +GH++ + L  +   +TG+  T  +    C GC+  K      P+ + T + + L  V+ D+ GP +T  + G RY +VF DD SR + VY+L
Sbjct:  102 EWELWHARMGHLNDDSLTKTRLATTGLPKTQRIIKTLCGGCMKGKQTVSHFPSRSFTATTRPLELVHTDVMGPMKTRSKEGARYVLVFVDDYSRYVVVYFL 202          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5KL99_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KL99_ZINOF)

HSP 1 Score: 64.3 bits (155), Expect = 6.680e-9
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = -1
Query:    6 DWNVFHASVGHMSKELLAA-SAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299
            D +++H   GH++++ LA    KS  V L          CEGC+  K  R P PNT+  R++  L  V+ D+ GP QT   G +RY ++F DD +R++ +Y+L
Sbjct:  493 DSHLWHLRYGHLNRKGLALLKQKSMVVGLPSIQVAEGDVCEGCVFGKHHRLPFPNTS-WRAQAPLELVHADICGPTQTPSLGNRRYFLLFVDDYTRMIWIYFL 594          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5FRX0_ZINOF (Integrase catalytic domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FRX0_ZINOF)

HSP 1 Score: 64.3 bits (155), Expect = 6.890e-9
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = -1
Query:    6 DWNVFHASVGHMSKELLAA-SAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299
            D +++H   GH++++ LA    KS  V L          CEGC+  K  R P PNT+  R++  L  V+ D+ GP QT   G +RY ++F DD +R++ +Y+L
Sbjct:  493 DSHLWHLRYGHLNRKGLALLKQKSMVVGLPSIQVAEGDVCEGCVFGKHHRLPFPNTS-WRAQAPLELVHADICGPTQTPSLGNRRYFLLFVDDYTRMIWIYFL 594          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A396GM31_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GM31_MEDTR)

HSP 1 Score: 58.5 bits (140), Expect = 6.380e-7
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = -1
Query:    6 DWNVFHASVGHMSKELLAASAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299
            D  ++H   GH++ + L    +   V     +      CEGC+  K  R P P T   RS+  L  V+ D+ GP +T   G KRY ++F DD +R++ +Y+L
Sbjct:  472 DSYLWHLRYGHLNNKGLQLLKQKNMVVGLPEIKTDNAVCEGCIYGKMHRLPFPRTA-WRSQAPLELVHSDICGPTRTPSLGNKRYFLLFVDDYTRIIWIYFL 572          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 58.5 bits (140), Expect = 6.580e-7
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = -1
Query:    6 NVFHASVGHMSKELLAASAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 293
            +++H   GH+    L    +   V     + P    CEGC+  K  + P P T+  +++  L  V+ D+ GP QT   G KRY I+F DD +R+M +Y+L
Sbjct:  448 SLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPKTS-WQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFL 546          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 58.5 bits (140), Expect = 6.860e-7
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = -1
Query:    6 NVFHASVGHMSKELLAASAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 293
            +++H   GH+    L    +   V     + P    CEGC+  K  + P P T+  +++  L  V+ D+ GP QT   G KRY I+F DD +R+M +Y+L
Sbjct:  418 SLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPKTS-WQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFL 516          
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A821XQ83_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821XQ83_9NEOP)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-6
Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = -1
Query:    6 VDWNVFHASVGH-----MSKELLAASAKSTGVTLTGHLYPCEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 302
            V  +V+H  +GH     ++K  +A         +  +   C  C   K  R P P+ +  R  + LG V+ D+ GP +    GG RY I+F DD SR++ VY+L
Sbjct:  100 VSGDVWHRRLGHVNSTYLNKMSIAVEGMDLQEKVDINKSSCPVCCEGKQCRLPFPSGS--RCNELLGLVHTDICGPMEHESLGGSRYYILFIDDFSRMIAVYFL 201          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5L3Y0_9PHAE8.680e-1740.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5GLM3_9HEMI3.840e-1035.92Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JV54_9PHAE4.170e-1044.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225UGU7_9STRA2.290e-932.67Integrase catalytic domain-containing protein (Fra... [more]
A0A8J5KL99_ZINOF6.680e-935.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5FRX0_ZINOF6.890e-935.92Integrase catalytic domain-containing protein n=2 ... [more]
A0A396GM31_MEDTR6.380e-732.35Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
A0A8J5GP83_ZINOF6.580e-733.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F3N7_ZINOF6.860e-733.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A821XQ83_9NEOP1.020e-631.73Hypothetical protein n=1 Tax=Pieris macdunnoughi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1000contigD-dichotoma_M_contig1000:130902..131410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927479.9076965-UTR-D-dichotoma_M_contig1000:130901..1311071622927479.9076965-UTR-D-dichotoma_M_contig1000:130901..131107Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1000 130902..131107 +
1690797991.7363336-UTR-D-dichotoma_M_contig1000:130901..1311071690797991.7363336-UTR-D-dichotoma_M_contig1000:130901..131107Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1000 130902..131107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927479.9244645-CDS-D-dichotoma_M_contig1000:131107..1314101622927479.9244645-CDS-D-dichotoma_M_contig1000:131107..131410Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1000 131108..131410 +
1690797991.7481165-CDS-D-dichotoma_M_contig1000:131107..1314101690797991.7481165-CDS-D-dichotoma_M_contig1000:131107..131410Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1000 131108..131410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1000.102.1prot_D-dichotoma_M_contig1000.102.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1000 131108..131410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1000.102.1

>prot_D-dichotoma_M_contig1000.102.1 ID=prot_D-dichotoma_M_contig1000.102.1|Name=mRNA_D-dichotoma_M_contig1000.102.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=101bp
MTGQRYARGFRRRCKQFLTHMTYRSMEHVPIYFFRRSSSRCNNSSTCLIR
RFTRLVWRFTYRLTHTSKLIAHANITRIFHFKFHVSGHWITRKLVQIILD
W
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mRNA from alignment at D-dichotoma_M_contig1000:130902..131410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1000.102.1 ID=mRNA_D-dichotoma_M_contig1000.102.1|Name=mRNA_D-dichotoma_M_contig1000.102.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=509bp|location=Sequence derived from alignment at D-dichotoma_M_contig1000:130902..131410+ (Dictyota dichotoma ODC1387m male)
TTCGCAAGATAGTAGACCCGCATTAGACGTGACAGGTCATCCCGGAACAC TATCGCATATCGCTTGCCCCCTCTCCCCATCGTCTGTTTAGGGCCCGCCA AATCACAGTAAACGCGGCCCAAACGTTTCTCAGAACGGGTTTCGGTTGTG TTCGGGATTGGTCTTCTGATCCCCTTTGCGGCTAGACAGCCTTCGCATGG ATACAAATGACCGGTCAACGTTACGCCCGTGGATTTCGCCGACGCTGCAA GCAATTCCTTACTCATATGACCTACAGAAGCATGGAACACGTTCCAATCT ACTTCTTTAGGAGGAGTTCGAGCCGGTGCAACAACAGCTCTACATGCTTG ATCAGGAGGTTCACCAGGCTTGTCTGGCGTTTCACATACAGACTCACTCA CACCTCCAAATTGATTGCACATGCGAATATTACCAGAATCTTCCATTTCA AGTTTCATGTTTCTGGTCACTGGATAACCCGCAAACTTGTACAAATTATC CTTGACTGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1000:130902..131410+

>mRNA_D-dichotoma_M_contig1000.102.1 ID=mRNA_D-dichotoma_M_contig1000.102.1|Name=mRNA_D-dichotoma_M_contig1000.102.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=606bp|location=Sequence derived from alignment at D-dichotoma_M_contig1000:130902..131410+ (Dictyota dichotoma ODC1387m male)
ATGACCGGTCAACGTTACGCCCGTGGATTTCGCCGACGCTGCAAGCAATT
CCTTACTCATATGACCTACAGAAGCATGGAACACGTTCCAATCTACTTCT
TTAGGAGGAGTTCGAGCCGGTGCAACAACAGCTCTACATGCTTGATCAGG
AGGTTCACCAGGCTTGTCTGGCGTTTCACATACAGACTCACTCACACCTC
CAAATTGATTGCACATGCGAATATTACCAGAATCTTCCATTTCAAGTTTC
ATGTTTCTGGTCACTGGATAACCCGCAAACTTGTACAAATTATCCTTGAC
TGGATGACCGGTCAACGTTACGCCCGTGGATTTCGCCGACGCTGCAAGCA
ATTCCTTACTCATATGACCTACAGAAGCATGGAACACGTTCCAATCTACT
TCTTTAGGAGGAGTTCGAGCCGGTGCAACAACAGCTCTACATGCTTGATC
AGGAGGTTCACCAGGCTTGTCTGGCGTTTCACATACAGACTCACTCACAC
CTCCAAATTGATTGCACATGCGAATATTACCAGAATCTTCCATTTCAAGT
TTCATGTTTCTGGTCACTGGATAACCCGCAAACTTGTACAAATTATCCTT
GACTGG
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