mRNA_D-dichotoma_M_contig1000.102.1 (mRNA) Dictyota dichotoma ODC1387m male
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 8.680e-17 Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -1 Query: 6 VDWNVFHASVGHMSKELLAASAKSTGVTLTGHLYPCEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 302 +D N FH H + LL +AK G L G ++ C GC +K IR+ I T+ RS+K+LGRV+ DL G K + GGK Y ++ +DD +R +Y+L Sbjct: 130 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFL 228
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A6H5GLM3_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GLM3_9HEMI) HSP 1 Score: 67.8 bits (164), Expect = 3.840e-10 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = -1 Query: 3 EVDWNVFHASVGHMSKELLAASAKSTGVTLTGHLYP--CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYLA 305 E+ W+ A + H S +LL S G++ T P CE C+ K R+P P ++++L V+ DL GP Q G RY +VF DD +R + VY+LA Sbjct: 126 EMVWHQRLAHLNHFSMKLLRDELAS-GISYTSEKEPKLCESCIRGKHARKPFPKEKTKLADQKLALVHTDLCGPFQVNSWSGARYMLVFLDDHTRKLWVYFLA 227
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A6H5JV54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV54_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 4.170e-10 Identity = 40/90 (44.44%), Postives = 45/90 (50.00%), Query Frame = -1 Query: 132 VSESVCETPDKPGEPPDQACRAVVAPARTPPKEVDWNVFHASVGHMSKELLAASAKSTGVTLTGHLYPCEGCLAAKGIRRPIPNTTETRS 401 V+E D GE R V AR VD N FH + GH + LL AK G TL G L C GCLAAKGI +PIPN T R+ Sbjct: 306 VAEEALVVGDISGECHKVVGRGGVEQARRGSTPVDINDFHCAHGHSHEVLLRTMAKQQGTTLVGELRECLGCLAAKGISKPIPNKTSIRA 395
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A225UGU7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGU7_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.290e-9 Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = -1 Query: 6 DWNVFHASVGHMSKELLAASA-KSTGVTLTGHLYP--CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299 +W ++HA +GH++ + L + +TG+ T + C GC+ K P+ + T + + L V+ D+ GP +T + G RY +VF DD SR + VY+L Sbjct: 102 EWELWHARMGHLNDDSLTKTRLATTGLPKTQRIIKTLCGGCMKGKQTVSHFPSRSFTATTRPLELVHTDVMGPMKTRSKEGARYVLVFVDDYSRYVVVYFL 202
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5KL99_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KL99_ZINOF) HSP 1 Score: 64.3 bits (155), Expect = 6.680e-9 Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = -1 Query: 6 DWNVFHASVGHMSKELLAA-SAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299 D +++H GH++++ LA KS V L CEGC+ K R P PNT+ R++ L V+ D+ GP QT G +RY ++F DD +R++ +Y+L Sbjct: 493 DSHLWHLRYGHLNRKGLALLKQKSMVVGLPSIQVAEGDVCEGCVFGKHHRLPFPNTS-WRAQAPLELVHADICGPTQTPSLGNRRYFLLFVDDYTRMIWIYFL 594
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5FRX0_ZINOF (Integrase catalytic domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FRX0_ZINOF) HSP 1 Score: 64.3 bits (155), Expect = 6.890e-9 Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = -1 Query: 6 DWNVFHASVGHMSKELLAA-SAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299 D +++H GH++++ LA KS V L CEGC+ K R P PNT+ R++ L V+ D+ GP QT G +RY ++F DD +R++ +Y+L Sbjct: 493 DSHLWHLRYGHLNRKGLALLKQKSMVVGLPSIQVAEGDVCEGCVFGKHHRLPFPNTS-WRAQAPLELVHADICGPTQTPSLGNRRYFLLFVDDYTRMIWIYFL 594
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A396GM31_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GM31_MEDTR) HSP 1 Score: 58.5 bits (140), Expect = 6.380e-7 Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = -1 Query: 6 DWNVFHASVGHMSKELLAASAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 299 D ++H GH++ + L + V + CEGC+ K R P P T RS+ L V+ D+ GP +T G KRY ++F DD +R++ +Y+L Sbjct: 472 DSYLWHLRYGHLNNKGLQLLKQKNMVVGLPEIKTDNAVCEGCIYGKMHRLPFPRTA-WRSQAPLELVHSDICGPTRTPSLGNKRYFLLFVDDYTRIIWIYFL 572
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF) HSP 1 Score: 58.5 bits (140), Expect = 6.580e-7 Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = -1 Query: 6 NVFHASVGHMSKELLAASAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 293 +++H GH+ L + V + P CEGC+ K + P P T+ +++ L V+ D+ GP QT G KRY I+F DD +R+M +Y+L Sbjct: 448 SLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPKTS-WQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFL 546
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF) HSP 1 Score: 58.5 bits (140), Expect = 6.860e-7 Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = -1 Query: 6 NVFHASVGHMSKELLAASAKSTGVTLTGHLYP----CEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 293 +++H GH+ L + V + P CEGC+ K + P P T+ +++ L V+ D+ GP QT G KRY I+F DD +R+M +Y+L Sbjct: 418 SLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPKTS-WQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFL 516
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Match: A0A821XQ83_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821XQ83_9NEOP) HSP 1 Score: 57.4 bits (137), Expect = 1.020e-6 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = -1 Query: 6 VDWNVFHASVGH-----MSKELLAASAKSTGVTLTGHLYPCEGCLAAKGIRRPIPNTTETRSEKRLGRVYCDLAGPKQTMGRGGKRYAIVFRDDLSRLMRVYYL 302 V +V+H +GH ++K +A + + C C K R P P+ + R + LG V+ D+ GP + GG RY I+F DD SR++ VY+L Sbjct: 100 VSGDVWHRRLGHVNSTYLNKMSIAVEGMDLQEKVDINKSSCPVCCEGKQCRLPFPSGS--RCNELLGLVHTDICGPMEHESLGGSRYYILFIDDFSRMIAVYFL 201 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1000.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1000.102.1 >prot_D-dichotoma_M_contig1000.102.1 ID=prot_D-dichotoma_M_contig1000.102.1|Name=mRNA_D-dichotoma_M_contig1000.102.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=101bp MTGQRYARGFRRRCKQFLTHMTYRSMEHVPIYFFRRSSSRCNNSSTCLIRback to top mRNA from alignment at D-dichotoma_M_contig1000:130902..131410+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1000.102.1 ID=mRNA_D-dichotoma_M_contig1000.102.1|Name=mRNA_D-dichotoma_M_contig1000.102.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=509bp|location=Sequence derived from alignment at D-dichotoma_M_contig1000:130902..131410+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1000:130902..131410+ >mRNA_D-dichotoma_M_contig1000.102.1 ID=mRNA_D-dichotoma_M_contig1000.102.1|Name=mRNA_D-dichotoma_M_contig1000.102.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=606bp|location=Sequence derived from alignment at D-dichotoma_M_contig1000:130902..131410+ (Dictyota dichotoma ODC1387m male)back to top |