mRNA_D-dichotoma_M_contig100.97.1 (mRNA) Dictyota dichotoma ODC1387m male
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig100.97.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI) HSP 1 Score: 565 bits (1455), Expect = 1.990e-182 Identity = 487/857 (56.83%), Postives = 601/857 (70.13%), Query Frame = 2 Query: 470 LPTFKEVKMSLLPMTTIVEKNLSGGGAGGGKCVYLASLVSGNNVERRNGSGPDGAGGIGGYYGMSTSVDIAAAKXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXARASAVGEAADLYATAKAFLLEYPEFHYVWVASACMPPHMRQEKSAGAVPGVNGSNMFDHFHPSALLACESMLVVPPERENLVWLPEQRERYSDLEIFSMSPWKALEGTIGSLIGTVTYYAFRLGETLLFIGPYGPAPPSSEPSPLGRTHVRRLSLSASPGSRGDGDGXXXXXXXXXXXXXXXXXXSP-GGR-SSETPVSRAKAVATGAAKVLLARGWGGTKMLQSSGFAGGVNKDHERGALGEEVAGEYGRAGGDCFGSRTTTAPPSELSAGGRRWGDSG----------FEGARIERAVSDALDRFGVNGSGTSPERNWRGVIRPCLLLRKAREDVEKFSDARGALKQAMCTMSVTREQAEEFFGVWRHLGIMGQVTARDRLATLNLLLFSLAVADGYYNPRRSPEYVSQAVEESLVTPDHLDLWMKDMSPDDSREILKSINLSGKKLAKLTIGSSHTGGAGVGSFLRGHATLKELEVEWEGVRDLTLIAGALADHKSLVRLNLTHNEIGPQGAVQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDSKRALHDAWSQREADAGLTQSGMLLEQPTVGAISSRGRWVNGIPLGNGLMNLEED----VEEGVGVLVSPTRAER-------EPPHGGGTNGGGPGERTGGGSGGLLPRFSPVNDTFVRRPLW 2971 +P+ +E K L P+ ++ +K G GK +YL S G+++E+R + G + SVD+A+ K XXXXXXXXXXXXXXXXXXXX XXXXXXX +ASA GEAADLYATA+AFL+E PEF ++WV++ACMPP +R++K GAVP GSNMF+H HP AL+AC+++LV PPERE++ ++ EQR RYSDLE++S SPWKALEG I L+ +V++YAFRLG+ L+F GPY P +PSPL +RR S AS SP GGR ++E+PV RAKA AAK++ ++G T+M +S E G G G + TTA S+ S G +G G EG+RIERAV++ALDR G+NG+ + PERNWRGV++PC +LRK R+DVEK+SDA+GALKQAMC++SV+ +QAEEFF VW++L +G + DRLA LNLL+F+++VADGY PRR ++V + + ESLVTP HLDLWMKD+SPDDSR IL++++ +GKKL+ LT+GSSHT GAGVGSFLRGH +L+ELE+EWEGVRDL+ IA AL +HKSL RLNLTHNEIGP+GA+Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKRAL DAWS+RE + G ++SGM L+Q G S RG W + +PL G+ V G G+LVSPTR +R +PP G +G G RTGG GGLLPRFSPV + F R+PLW Sbjct: 1 MPSHEEAKPHLRPVLSLTDKKRYP--MGSGKALYL-SHSQGDHLEKRW---------VPGDPPKTASVDVAS-KAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIAKQASAAGEAADLYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHLHPGALVACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVIMQLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPL---DLRRGSAPAS----------------------IVGADSPVGGRMATESPVDRAKA----AAKLMFSKG---TRMGWNSKSDMSAGDSLEDGRWNGWDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGGGDVSRRRRSTPTEGSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYLASLGPCASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGHLDLWMKDLSPDDSRNILRAVSAAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRALQDAWSERELEDGESRSGMFLDQAAEGTASGRG-WNSTLPLAEGVFVSTRPGLGPVGIGGGILVSPTRDQRGSETSMMKPPTGSSDDGNG--SRTGGDDGGLLPRFSPVGEQFARKPLW 809
BLAST of mRNA_D-dichotoma_M_contig100.97.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA) HSP 1 Score: 126 bits (316), Expect = 9.370e-26 Identity = 92/240 (38.33%), Postives = 120/240 (50.00%), Query Frame = 2 Query: 1712 RNWRGVIRPCLLLRKAREDVEKFSDARGALKQAMCTMSVTREQAEEFFGVWRHLGIMGQVTA----RDRLATLNLLLFSLAVADGYYNPRRSPEYVSQAVEESL-VTPDH------LDLWMK-------------DMSPDDSREILKSINL------------SGKK---LAKLTIGSSHTGGAGVGSFLRGHATLKELEVEWEGVRDLTLIAGALADHKSLVRLNLTHNEIGPQGAVQL 2314 +NW L+ R+DV A GAL+QA+C+MSVT+ QA EF W H + G+ A +RLA LNLL F +A + P R+P Y + ESL P+ LDLWM D+SP D +L++ GK + +LT+GSSH+GGAGVG FL + L LE+EWE VRD+ I L L+ LNLTHN IG +G VQL Sbjct: 284 KNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTW-HALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQL 522 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig100.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig100.97.1 >prot_D-dichotoma_M_contig100.97.1 ID=prot_D-dichotoma_M_contig100.97.1|Name=mRNA_D-dichotoma_M_contig100.97.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=896bp MGNLASLSDESSHRDDGGRRSRAERWALVKKYISLLEVPFPAVSLESVFVback to top mRNA from alignment at D-dichotoma_M_contig100:477207..523653- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig100.97.1 ID=mRNA_D-dichotoma_M_contig100.97.1|Name=mRNA_D-dichotoma_M_contig100.97.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=46447bp|location=Sequence derived from alignment at D-dichotoma_M_contig100:477207..523653- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig100:477207..523653- >mRNA_D-dichotoma_M_contig100.97.1 ID=mRNA_D-dichotoma_M_contig100.97.1|Name=mRNA_D-dichotoma_M_contig100.97.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=5376bp|location=Sequence derived from alignment at D-dichotoma_M_contig100:477207..523653- (Dictyota dichotoma ODC1387m male)back to top |