mRNA_D-dichotoma_M_contig100.92.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig100.92.1
Unique NamemRNA_D-dichotoma_M_contig100.92.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig100.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig100contigD-dichotoma_M_contig100:340215..340810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.0836022-UTR-D-dichotoma_M_contig100:340214..3404891622927475.0836022-UTR-D-dichotoma_M_contig100:340214..340489Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig100 340215..340489 +
1690797988.3410852-UTR-D-dichotoma_M_contig100:340214..3404891690797988.3410852-UTR-D-dichotoma_M_contig100:340214..340489Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig100 340215..340489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.1004775-CDS-D-dichotoma_M_contig100:340489..3408101622927475.1004775-CDS-D-dichotoma_M_contig100:340489..340810Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig100 340490..340810 +
1690797988.3546624-CDS-D-dichotoma_M_contig100:340489..3408101690797988.3546624-CDS-D-dichotoma_M_contig100:340489..340810Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig100 340490..340810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig100.92.1prot_D-dichotoma_M_contig100.92.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig100 340490..340810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig100.92.1

>prot_D-dichotoma_M_contig100.92.1 ID=prot_D-dichotoma_M_contig100.92.1|Name=mRNA_D-dichotoma_M_contig100.92.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=107bp
MRPSLIISLQHKRHEPKHRDAPQRAMMPRTELVPCKLFRLHRHSIPSPGC
FAGPTNGSKAPRKREIRTHPSLKLGHACRDTRQTSIDTHRSIRDNKHHGD
TQTNPGE
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mRNA from alignment at D-dichotoma_M_contig100:340215..340810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig100.92.1 ID=mRNA_D-dichotoma_M_contig100.92.1|Name=mRNA_D-dichotoma_M_contig100.92.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=596bp|location=Sequence derived from alignment at D-dichotoma_M_contig100:340215..340810+ (Dictyota dichotoma ODC1387m male)
CTTTGATCAGCCTTTCCCCCCCTTCCTACACTATCCTTCCATTTCCCCAA
ATATTCCAACTCTGTCACACCGAGGCATCCTTTACAACCACTCCAGACAC
ATCACGTTCGCCGGTCCACCTCTCAAACGGATTATTCACGCTCTTCACAA
GGAGAACACACACGGAATAGCACGCAAGCACGCGTGTCAACTGCCTCAAT
ACACCAAAACCTCCACAAGCACGATTGGCTTTGCAACTCACCACCTCCCC
AGCACGTATTCAACCCGAAACCTCTATGCGGCCCAGTCTCATCATTTCTC
TACAACACAAGAGACACGAACCCAAGCACCGCGACGCACCGCAACGCGCG
ATGATGCCCCGGACAGAGCTCGTTCCATGTAAGTTATTCAGGCTACATCG
GCACTCCATACCTAGCCCAGGCTGTTTTGCAGGACCAACAAACGGAAGCA
AGGCACCGCGCAAGCGAGAAATACGAACTCATCCAAGCCTTAAACTAGGA
CACGCCTGCCGAGATACCCGACAAACATCCATCGATACTCACCGATCCAT
CAGAGACAACAAGCATCACGGGGATACCCAAACCAACCCGGGCGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig100:340215..340810+

>mRNA_D-dichotoma_M_contig100.92.1 ID=mRNA_D-dichotoma_M_contig100.92.1|Name=mRNA_D-dichotoma_M_contig100.92.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=642bp|location=Sequence derived from alignment at D-dichotoma_M_contig100:340215..340810+ (Dictyota dichotoma ODC1387m male)
ATGCGGCCCAGTCTCATCATTTCTCTACAACACAAGAGACACGAACCCAA
GCACCGCGACGCACCGCAACGCGCGATGATGCCCCGGACAGAGCTCGTTC
CATGTAAGTTATTCAGGCTACATCGGCACTCCATACCTAGCCCAGGCTGT
TTTGCAGGACCAACAAACGGAAGCAAGGCACCGCGCAAGCGAGAAATACG
AACTCATCCAAGCCTTAAACTAGGACACGCCTGCCGAGATACCCGACAAA
CATCCATCGATACTCACCGATCCATCAGAGACAACAAGCATCACGGGGAT
ACCCAAACCAACCCGGGCGAGATGCGGCCCAGTCTCATCATTTCTCTACA
ACACAAGAGACACGAACCCAAGCACCGCGACGCACCGCAACGCGCGATGA
TGCCCCGGACAGAGCTCGTTCCATGTAAGTTATTCAGGCTACATCGGCAC
TCCATACCTAGCCCAGGCTGTTTTGCAGGACCAACAAACGGAAGCAAGGC
ACCGCGCAAGCGAGAAATACGAACTCATCCAAGCCTTAAACTAGGACACG
CCTGCCGAGATACCCGACAAACATCCATCGATACTCACCGATCCATCAGA
GACAACAAGCATCACGGGGATACCCAAACCAACCCGGGCGAG
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