mRNA_D-dichotoma_M_contig100.90.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig100.90.1
Unique NamemRNA_D-dichotoma_M_contig100.90.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.250e-32
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 3 
Query:   57 MSSTIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQ 275
            MS+ +YE+VAL EM Y D EQMYYYECPCGDKFEISLEDLYDGED APCPSCTLQIKV F E +LPELR + +
Sbjct:    1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEE 73
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 95.1 bits (235), Expect = 5.350e-22
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:   66 TIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQDSP 284
            ++Y++V + +M Y  +EQ+YYY CPCGDKF I+L++LYDGED A CPSC+L ++V F E DLPEL+ D  + P
Sbjct:    2 SVYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEEDDLPELKDDDGEEP 74
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A8K1CL36_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL36_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-21
Identity = 39/73 (53.42%), Postives = 58/73 (79.45%), Query Frame = 3 
Query:   66 TIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQDSP 284
            ++Y++V + +M Y  +EQ+YYY CPCGDKF I+LE+LYDGED A CPSC+L ++V ++E +LPEL+ D ++ P
Sbjct:    2 SVYDEVEIEDMEYNAEEQVYYYPCPCGDKFFITLEELYDGEDEATCPSCSLILRVIYDEDNLPELKEDDEEEP 74
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A662X3X8_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3X8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.190e-21
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 3 
Query:   66 TIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQDS 281
            ++Y++V + +M +  +EQ YYY CPCGDKF I+LEDLYDGED A CPSC+L I+V F+E +LPEL+ + +++
Sbjct:    2 SVYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEDELPELKEEEEEA 73
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.380e-21
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 3 
Query:   66 TIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQDS 281
            ++Y++V + +M +  +EQ YYY CPCGDKF I+LEDLYDGED A CPSC+L I+V F+E +LPEL+ + +++
Sbjct:   26 SVYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEGELPELKEEEEEA 97
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.020e-21
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:   63 STIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQD 278
            S +YE+VAL +MT+   EQMY Y CPCGD FEISLEDL DGED APCPSCTL+I+V ++   LP L+    D
Sbjct:    4 SVVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLYDMESLPPLQQPEGD 75
[Close]
BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A7R9VMJ4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VMJ4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.830e-21
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:   66 TIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRAD 269
            +IYE+V + ++ Y   EQ+Y Y CPCGDKF I+LE+L+DGED A CPSCTLQI V ++E DLPEL  D
Sbjct:    2 SIYEEVEIEDLDYDSTEQLYTYPCPCGDKFRITLEELWDGEDIARCPSCTLQIMVVYDEEDLPELTED 69
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BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP)

HSP 1 Score: 91.7 bits (226), Expect = 1.270e-20
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 3 
Query:   63 STIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELRADAQD 278
            + +Y++V + +M +  +EQ+YYY CPCGD+F I LE+LYDGED A CPSC+L I+V F+E  LPEL+ + ++
Sbjct:    2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEEEEE 73
[Close]
BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A6A4D2K3_9STRA (DPH-type MB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D2K3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.570e-20
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:   63 STIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPELR----ADAQDSPPG 290
            + +Y++V + +M +  +EQ+YYY CPCGD+F I LE+LYDGED A CPSC+L I+V F+E +LPEL+    AD     PG
Sbjct:    2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVVFDEENLPELKEEEDADMDTGGPG 81
[Close]
BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.080e-20
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 3 
Query:   66 TIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIKVTFNERDLPEL----RADAQDSPPGVPPL 302
            ++YE+V L +M Y +   M++Y+CPCGD FEISLE+L+DGED APCPSC+L+I+V + E DLP L     A A+ S   +PP+
Sbjct:    2 SVYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEEEDLPALPTGANAPAERSSKPLPPV 84
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig100.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI1.250e-3276.71DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
K3WTP3_GLOUD5.350e-2254.79DPH-type MB domain-containing protein n=1 Tax=Glob... [more]
A0A8K1CL36_PYTOL1.060e-2153.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662X3X8_9STRA1.190e-2154.17DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A662Y1E6_9STRA2.380e-2154.17DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A835Z4X0_9STRA3.020e-2161.11Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
A0A7R9VMJ4_9STRA6.830e-2160.29Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
G4YJ90_PHYSP1.270e-2051.39DPH-type MB domain-containing protein n=12 Tax=Phy... [more]
A0A6A4D2K3_9STRA1.570e-2051.25DPH-type MB domain-containing protein n=3 Tax=Phyt... [more]
A0A7S2W7Y0_9STRA3.080e-2051.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig100contigD-dichotoma_M_contig100:327651..329069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.7e-26
Seed eggNOG ortholog2880.D7FV69
Preferred nameDPH3
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
EC1.2.4.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, DPH-type
Ec32 orthologEc-12_007340.1
Exons2
Model size691
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig100.90.1prot_D-dichotoma_M_contig100.90.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig100 327707..328707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927477.9186265-UTR-D-dichotoma_M_contig100:327650..3277061622927477.9186265-UTR-D-dichotoma_M_contig100:327650..327706Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig100 327651..327706 +
1690797990.3779268-UTR-D-dichotoma_M_contig100:327650..3277061690797990.3779268-UTR-D-dichotoma_M_contig100:327650..327706Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig100 327651..327706 +
1622927477.9618542-UTR-D-dichotoma_M_contig100:328707..3290691622927477.9618542-UTR-D-dichotoma_M_contig100:328707..329069Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig100 328708..329069 +
1690797990.4146552-UTR-D-dichotoma_M_contig100:328707..3290691690797990.4146552-UTR-D-dichotoma_M_contig100:328707..329069Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig100 328708..329069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927477.9345675-CDS-D-dichotoma_M_contig100:327706..3278921622927477.9345675-CDS-D-dichotoma_M_contig100:327706..327892Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig100 327707..327892 +
1690797990.3905625-CDS-D-dichotoma_M_contig100:327706..3278921690797990.3905625-CDS-D-dichotoma_M_contig100:327706..327892Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig100 327707..327892 +
1622927477.949565-CDS-D-dichotoma_M_contig100:328620..3287071622927477.949565-CDS-D-dichotoma_M_contig100:328620..328707Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig100 328621..328707 +
1690797990.4019969-CDS-D-dichotoma_M_contig100:328620..3287071690797990.4019969-CDS-D-dichotoma_M_contig100:328620..328707Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig100 328621..328707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig100.90.1

>prot_D-dichotoma_M_contig100.90.1 ID=prot_D-dichotoma_M_contig100.90.1|Name=mRNA_D-dichotoma_M_contig100.90.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=91bp
MSSTIYEDVALHEMTYVDDEQMYYYECPCGDKFEISLEDLYDGEDTAPCP
SCTLQIKVTFNERDLPELRADAQDSPPGVPPLPLLVAVHG*
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mRNA from alignment at D-dichotoma_M_contig100:327651..329069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig100.90.1 ID=mRNA_D-dichotoma_M_contig100.90.1|Name=mRNA_D-dichotoma_M_contig100.90.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at D-dichotoma_M_contig100:327651..329069+ (Dictyota dichotoma ODC1387m male)
CAGAAACGTCTCACCGTTCGACGTTAGCTCAAGGTAGAGGCAGATTGCAC
TTGAGCATGTCTTCCACTATCTATGAGGATGTGGCTCTACATGAGATGAC
TTACGTGGATGATGAACAGATGTACTACTACGAATGCCCATGTGGTGACA
AGTTTGAAATTTCCTTGGAAGACTTGTACGATGGTGAAGACACTGCACCA
TGTCCAAGTTGCACCTTACAGATCAAAGTCACATTCAACGAGGTGAGATG
CTCTTCTTATAGGAAAACTCACTCAAATCCATGCGAGAATCTTTTGCGTA
CATTTCCACCTCGGCGTTCCTTTCTAACCATTGTGCAAAGAAGCCGTGGT
GTCGATGTTTGGTCGAGGATTCAGTTTGAATTATTTCTGTGCAGTATCTA
AGCAGAGTGTTGACCTGTCACTCAAGGGTGACGGTGGAGACTGAGTGTTT
CTCTGTCGAGAAGAACAATGACGGAAGAGGACTCCGATAGTTTTCCACAG
GGAGAAGACTCGAGGTCTCCGTGCTTTCTTTGTTGGAGCCATTGCGGGAT
ATTTCAATCGGTCATGTTCCTGAGCAGTTATGTACGATGGAAGCTCGTCC
TGCCCACAGTCCACTCGTGGTGCGACACACCACGAGTTCCAACTACATAA
ATGCACAAGGGTGTAACGGAGTACGTGAGGAAAAAAACAGTCCAAACCTG
GCCCCACAACATTTCTCACGAACATGGTCGGATCTAAATTTCATGAAAAC
ATAAAAGCACTTCAAATCTGGCCTGAAGTTTTTGGTCGCATTTTTTGGGG
GCCAGAATTGGACTGTTCTTTTCTCACGTATTCCGTTACACCCGTGAGCA
CCACTGTATTACGAATGTTGATAATGCTGGCACTGATTTCCTCCTCTGTA
GTCAGATGAACGCCACGTCGTTTGCATTTACGCCCGTCCTTGCTGCCAAA
TGACTTCGCCACTGCCACAGAGAGACCTCCCGGAGCTTCGAGCCGACGCA
CAAGATAGTCCACCAGGCGTACCTCCGTTGCCGCTCCTGGTGGCAGTACA
CGGGTAGACGACTGGCAATACTGTACCAATGATAATATGAATAAATCCAT
CTCAACGGAGCGATCACCTGAAAGACTACCAACAAGTTGGCAACAAGTTT
GGATCCCTTATTGTAGAGATGGGTAGCAACTGCACGTGAGCTTATTGGAA
GGCGACTGCATCTCAAGTTTCCTGACGATATCGATCCGTCAGTACCATTA
GAAGAGAGGGCTGATCGATACCCTCGTGGGTATTGCTGCTAGCCGGATAA
CCGAGTATGAACGTTATACAGTCGAACCTCCATATTAAGACACCTACGGG
ACGTGCCCTAATTTAGAAGGTGCCTTAATCTAGCCAAGGGACAGCCGAGT
AATTTCGGAATGAAGCACA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig100:327651..329069+

>mRNA_D-dichotoma_M_contig100.90.1 ID=mRNA_D-dichotoma_M_contig100.90.1|Name=mRNA_D-dichotoma_M_contig100.90.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=546bp|location=Sequence derived from alignment at D-dichotoma_M_contig100:327651..329069+ (Dictyota dichotoma ODC1387m male)
ATGTCTTCCACTATCTATGAGGATGTGGCTCTACATGAGATGACTTACGT
GGATGATGAACAGATGTACTACTACGAATGCCCATGTGGTGACAAGTTTG
AAATTTCCTTGGAAGACTTGTACGATGGTGAAGACACTGCACCATGTCCA
AGTTGCACCTTACAGATCAAAGTCACATTCAACGAGATGTCTTCCACTAT
CTATGAGGATGTGGCTCTACATGAGATGACTTACGTGGATGATGAACAGA
TGTACTACTACGAATGCCCATGTGGTGACAAGTTTGAAATTTCCTTGGAA
GACTTGTACGATGGTGAAGACACTGCACCATGTCCAAGTTGCACCTTACA
GATCAAAGTCACATTCAACGAGAGAGACCTCCCGGAGCTTCGAGCCGACG
CACAAGATAGTCCACCAGGCGTACCTCCGTTGCCGCTCCTGGTGGCAGTA
CACGGGTAGAGAGACCTCCCGGAGCTTCGAGCCGACGCACAAGATAGTCC
ACCAGGCGTACCTCCGTTGCCGCTCCTGGTGGCAGTACACGGGTAG
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