mRNA_D-herbacea_F_contig1028.378.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: Q2TUJ5_FUCVE (Ribosomal protein S11 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ5_FUCVE) HSP 1 Score: 333 bits (855), Expect = 1.840e-113 Identity = 171/179 (95.53%), Postives = 174/179 (97.21%), Query Frame = 2
Query: 350 MLIKLYDYRANIYNSKEFVLAENTIKKTFNNSKGMSTKTFVRP--IRFLENEQKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
MLIKLYDYRA I NSKEFVLA NTIKKTFNNSKGMSTKTF+RP IRFLENEQKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKIL+YFTGSNKGRSGVLRSLSKTGI+IYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI
Sbjct: 1 MLIKLYDYRAKICNSKEFVLAVNTIKKTFNNSKGMSTKTFLRPRPIRFLENEQKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILLYFTGSNKGRSGVLRSLSKTGIKIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 179
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A2R4QQ75_9PHAE (Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ75_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.680e-75 Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1
Query: 1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLPVRGQRTHTNAKKRLQFKINVN 357
MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLP RGQRTHTNAKKRLQFKINVN
Sbjct: 1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLPARGQRTHTNAKKRLQFKINVN 119
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A1L2F1H9_9PHAE (Ribosomal protein S11 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H9_9PHAE) HSP 1 Score: 193 bits (491), Expect = 2.540e-58 Identity = 96/137 (70.07%), Postives = 112/137 (81.75%), Query Frame = 2
Query: 473 RPIRFLENEQK-LGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
R IR L + + LG IY+ TKRNIFCTL D SK VKSSCSLRVP YKNEFNERENLYTRGL+LGK FG+K++SLGYKKI++Y G++KGRSGV+RS S+ GI+IYS VLIT+ AHNGCRP K RRKK RTKV+G
Sbjct: 37 RGIRSLSIQSRGLGLIYLKSTKRNIFCTLVDYASKTVKSSCSLRVPVYKNEFNERENLYTRGLLLGKLFGNKIISLGYKKIIVYVAGTSKGRSGVVRSFSRLGIDIYSIVLITRTAHNGCRPVKRRRKKLRTKVRGF 173
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A0G2RKV1_TUROR (Ribosomal protein S11 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKV1_TUROR) HSP 1 Score: 191 bits (484), Expect = 2.310e-57 Identity = 89/126 (70.63%), Postives = 107/126 (84.92%), Query Frame = 2
Query: 503 KLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
KLGSIY+ CTKRNIFCTL D S +K+SCSLRVP+Y+NEFNERENLYTRGL+LGK FGSK++SLGYKKI+++ G++KGR GV+RS S+ GI+I+S VLIT+ AHNGCRP K RRKK RTKV G
Sbjct: 41 KLGSIYLRCTKRNIFCTLVDCKSNVIKTSCSLRVPHYRNEFNERENLYTRGLLLGKLFGSKIISLGYKKIIVHVAGTSKGRFGVVRSFSRLGIDIHSIVLITRTAHNGCRPIKRRRKKLRTKVSGF 166
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A1S5QNP5_9PHAE (Ribosomal protein S11 n=2 Tax=Sargassum TaxID=3015 RepID=A0A1S5QNP5_9PHAE) HSP 1 Score: 191 bits (484), Expect = 2.470e-57 Identity = 90/137 (65.69%), Postives = 112/137 (81.75%), Query Frame = 2
Query: 479 IRFLENE---QKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
+R+L N +KLGS+Y+ CTKRNIFCTL D S +K+SCSLRVP+YKNEFNERENLYTRGL+LGK FG+K++SLGYK+I+++ G++KGR GV+RS SK GI+I+S LIT+ AHNGCRP K RRKK RTKV G
Sbjct: 32 VRYLNNNTRTKKLGSVYLRCTKRNIFCTLVDCKSNIIKTSCSLRVPDYKNEFNERENLYTRGLLLGKLFGNKIISLGYKRIIVHIMGTSKGRFGVVRSFSKLGIDIHSIALITRTAHNGCRPLKRRRKKLRTKVVGF 168
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A1L6KY25_9PHAE (Ribosomal protein S11 n=4 Tax=Sargassum TaxID=3015 RepID=A0A1L6KY25_9PHAE) HSP 1 Score: 190 bits (482), Expect = 4.940e-57 Identity = 89/137 (64.96%), Postives = 113/137 (82.48%), Query Frame = 2
Query: 479 IRFLENE---QKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
+R+L + ++LGS+Y+ CTKRNIFCTL D S +K+SCSLRVP+YKNEFNERENLYTRGL+LGK FG+K++SLGYK+I+++ G++KGR GV+RS SK GI+I+S VLIT+ AHNGCRP K RRKK RTKV G
Sbjct: 32 VRYLSDNTRTKELGSVYLRCTKRNIFCTLVDCKSNVIKTSCSLRVPDYKNEFNERENLYTRGLLLGKLFGNKIISLGYKRIIVHIVGTSKGRFGVVRSFSKLGIDIHSIVLITRTAHNGCRPVKRRRKKLRTKVVGF 168
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A1L1ZK89_9PHAE (Ribosomal protein S11 n=2 Tax=Sargassum TaxID=3015 RepID=A0A1L1ZK89_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.400e-56 Identity = 89/137 (64.96%), Postives = 110/137 (80.29%), Query Frame = 2
Query: 479 IRFLENE---QKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
+R+L + KLGS+Y+ CTKRNIFCTL D S+ +K+SCSLRVP+YKNEFNERENLYTRGL+LGK FG+K++S GY KI+++ G++KGR GV+RS SK GI I+S VLIT+ AHNGCRP K RRKK RTKV G
Sbjct: 32 VRYLNDNTRTNKLGSVYLRCTKRNIFCTLVDCKSRAIKTSCSLRVPDYKNEFNERENLYTRGLLLGKLFGNKIISFGYNKIIVHIMGTSKGRFGVVRSFSKLGINIHSIVLITRTAHNGCRPVKRRRKKLRTKVVGF 168
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: UPI002008ED41 (ribosomal protein S11 n=1 Tax=Myagropsis myagroides TaxID=74101 RepID=UPI002008ED41) HSP 1 Score: 188 bits (478), Expect = 1.980e-56 Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = 2
Query: 503 KLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
KLGS+Y+ CTKRNIFC L D+ SK +K+SCSLRVP YKNEFNERENLYTRGL+LGK FG+K++ LGYK+I+++ G++KGR GV+RS SK GI+I+S VLIT+ AHNGCRPAK RRKK RTKV G
Sbjct: 43 KLGSVYLRCTKRNIFCVLVDSNSKVIKTSCSLRVPYYKNEFNERENLYTRGLLLGKLFGNKIILLGYKQIIVHIVGTSKGRFGVVRSFSKLGIDIHSIVLITRTAHNGCRPAKRRRKKLRTKVVGF 168
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A8K1QUS6_SARHM (Ribosomal protein S11 n=2 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A8K1QUS6_SARHM) HSP 1 Score: 185 bits (470), Expect = 2.990e-55 Identity = 98/169 (57.99%), Postives = 122/169 (72.19%), Query Frame = 2
Query: 383 IYNSKEFVLAENTIKKTFNNSKGMSTKTFVRPIRFLENE---QKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
+ N++ FV EN K +S G V IR+L + +KLGS+Y+ CTKRNIFCTL S +K+SCSLRVP+YKN+FNER NLYTRGL+LGK FG+K++SLGYKKI+++ G+NKGR GV+RS SK GI+I S VL T+ AHNGCRP K RRKK RTKV G
Sbjct: 2 LINNRYFV--ENLFKSV--SSFGQKAVKNVLNIRYLNDNTRTKKLGSVYLKCTKRNIFCTLVGRESNLIKTSCSLRVPDYKNDFNERVNLYTRGLLLGKLFGNKIISLGYKKIIVHIAGTNKGRFGVVRSFSKLGIDINSIVLTTKIAHNGCRPIKRRRKKLRTKVVGF 166
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Match: A0A0U1Z648_9PHAE (Ribosomal protein S11 n=1 Tax=Sargassum thunbergii TaxID=127542 RepID=A0A0U1Z648_9PHAE) HSP 1 Score: 185 bits (470), Expect = 3.190e-55 Identity = 90/137 (65.69%), Postives = 108/137 (78.83%), Query Frame = 2
Query: 479 IRFLENE---QKLGSIYINCTKRNIFCTLTDTLSKKVKSSCSLRVPNYKNEFNERENLYTRGLVLGKFFGSKVVSLGYKKILIYFTGSNKGRSGVLRSLSKTGIEIYSTVLITQKAHNGCRPAKNRRKKFRTKVKGI 880
+R+L + KLGS+Y+ CTKRNIFCTL D S +K+SCSLRVP+YKNEFNER NLYTRGL+LGK FG+K+ SLGYKKI+I+ G+NKGR GV+RS SK I+I+S VL T+ AHNGCRP K RRKK RTKV G
Sbjct: 32 VRYLNDNTRTNKLGSVYLRCTKRNIFCTLVDCESNAIKTSCSLRVPDYKNEFNERVNLYTRGLLLGKLFGNKINSLGYKKIIIHIAGTNKGRFGVVRSFSKLSIDIHSIVLTTRTAHNGCRPIKRRRKKLRTKVMGF 168 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1028.378.1 >prot_D-herbacea_F_contig1028.378.1 ID=prot_D-herbacea_F_contig1028.378.1|Name=mRNA_D-herbacea_F_contig1028.378.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=178bp MLIKLYDYRANIYNSKEFVLAENTIKKTFNNSKGMSTKTFVRPIRFLENEback to top mRNA from alignment at D-herbacea_F_contig1028:76701..77583- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1028.378.1 ID=mRNA_D-herbacea_F_contig1028.378.1|Name=mRNA_D-herbacea_F_contig1028.378.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=883bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:76701..77583- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:76701..77583- >mRNA_D-herbacea_F_contig1028.378.1 ID=mRNA_D-herbacea_F_contig1028.378.1|Name=mRNA_D-herbacea_F_contig1028.378.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1068bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:76701..77583- (Desmarestia herbacea DmunF female)back to top |