mRNA_D-herbacea_F_contig1022.373.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI) HSP 1 Score: 270 bits (690), Expect = 1.730e-82 Identity = 175/411 (42.58%), Postives = 237/411 (57.66%), Query Frame = 1
Query: 1 ADWQTFEIQLDSDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDTYYVASPRMEEWDGSLYPEFVGEGRSDQEAIMGAICAVKKASFDGVDCVGEDPTANGTVQLLWIRAGWVSYATCSSLLLRFCNPTRDGISPGELANTDPFRLRKRDI-PSTFTTCVLRLQVEFIEEVQPEEIPVKSFDTP-DNIGESSM---ETVSPFRLGNAIKCMLPNVEYTYGWIENMDGDAIVVRDSQLVSIDAGPYDDAKYLVSLSALEPCSESKPYWVSSNRGTGLLVDNSEDVYIRRHAVSMHFARSVMIINYSTIYRGDDEGDGYVGSLDGQQPIEVIVESSTSVIFEDMSVRSANDPVMTVSADSSDVFFDNCGFSSVDAGTCVIQTEDPNVVNVDDDELELV--DTCYVKV 1212
A +Q+F++ +DQ VT + + MKGTGSGA GF ++D +G DNP+DT+YV S +E W G+ P+FVG G DQ AI GAICAVKK +FDGVDC+ D TA GTV L W+R W + ++CS N R + P EL++ D R + R I P L + + E+PV +F ++ ++S+ +V P L ++ L NV I GDA+VVRDS LVSIDAG YD+ + + S+ KP S +R GL + + V +R S H + + +R EG G VGS+DGQQPIEVIVESS+ V F+D V+S NDPVMT++ DS+ V F N G+S+V +GTC IQ +DP+ V +D DE ELV TCYVKV
Sbjct: 97 AGFQSFDLTGFADQYVTSIGIEMKGTGSGAPGFAVLDPMVLGAKIDNPSDTFYVGSTFIEFWSGNGLPDFVGTGSGDQNAINGAICAVKKGTFDGVDCIDMDETATGTVDLSWVRTSWTATSSCSLAFSSSANRRR--VDPRELSSRDRHRQQSRRIWPRIDLPLGCELPDFVVARLTLMEMPVTAFSASLHSLPKASLCLVPSVPP--LHRSMPNTLQNVTCEGVDIRYCSGDALVVRDSTLVSIDAGRYDEHEGVPSVDY-----RPKPRHRSDSRHVGLRLSSPAHVTRQRRGGSPHHGLEQFYLRSN--HRRGPEGAGNVGSVDGQQPIEVIVESSSLVKFQDKPVQSVNDPVMTIT-DSTTVSFTNGGYSNVPSGTCTIQADDPSTVTIDADEDELVLEGTCYVKV 495
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 281 bits (720), Expect = 7.460e-82 Identity = 187/427 (43.79%), Postives = 240/427 (56.21%), Query Frame = 1
Query: 7 WQTFEIQLDSDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDTYYVASPRMEEWDGSLYPEFVGEGRSDQEAIMGAICAVKKASFDGVDCVGEDPTANGTVQL----------LWIRAGWVSYATCSSLLLRFCNPTRDGISPGELANTDPFRLRKRDIPSTFTTCVLRLQVEFIEEVQPEEIPVKSFDTP--DNIGESSMETVSPFRLGNAIKCMLPNVEYTYGWIENMDGDAIVVRDSQLVSIDAGPYDDAKYLVSLSALEPCSESKPYWVSSNRGTGLLVDNSEDVYIRRHAVS------MHFARSVMIINYSTIYRG---DD---EGDGYVGSLDGQQPIEVIVESSTSVIFEDMSVRSANDPVMTVSADSSDVFFDNCGFSSVDAGTCVIQTEDPNVVNVDDD-ELELVDTCYVKV 1212
WQ FE+ D VT V +IMKGTGSGA GF L +ARF+GT DNP++T+YV S +E W YP+FV EG DQ+AIMGAICAVKKASFDGVDCVG D A G V + +++++G Y S + T + G TD + D S + + + E S DTP D +G + N+ Y + + DGDA+VVRDS++V+IDAGPYD+ E +P+ + +RGTG++VD+S+ V+IRR+ S +H + S +TI DD EG+G VGSLDGQQPIEVIVESST V F+DM V+S NDPVMTVS SS V FDNCGFS+V++GTCVIQT+ + V DD EL L TCYVKV
Sbjct: 760 WQRFELGT-IDDPVTEVTIIMKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESWRSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSG--VYLDASFSIDDSPYTTDIILEDGAAGKTDTAAIIVMDGISDARLSEVWIYGHYDSET--------SNDTPAVDGLGSVGLSITGS-----------TNITCRYASVYSSDGDALVVRDSEMVNIDAGPYDE--------------EYRPWTIGQSRGTGIVVDSSDSVWIRRYTTSDNGIAGIHVSGSNNFTFEATIADECWTDDCVLEGEGNVGSLDGQQPIEVIVESSTLVKFQDMKVQSVNDPVMTVSG-SSGVSFDNCGFSNVESGTCVIQTDATSEVTTGDDPELSLDGTCYVKV 1149
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 271 bits (692), Expect = 9.400e-79 Identity = 186/425 (43.76%), Postives = 243/425 (57.18%), Query Frame = 1
Query: 7 WQTFEIQLDSDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDTYYVASPRMEEWDGSLYPEFVGEGRSDQEAIMGAICAVKKASFDGVDCVGEDPTANGTVQLL---WIRAGWVSYATCSSLLLRFC---NP-TRDGI-SPGELANTDPFRLRKRDIPSTFTTCVLRLQVEFIEEVQPEEIPVKSFDTPDNIGESSMETVSPFRLGNAIKCMLPNVEYTY--GWIENMDGDAIVVRDSQLVSIDAGPYDDAKYLVSLSALEPCSESKPYWVSSNRGTGLLVDNSEDVYIRRHAV------SMHFARSVMIINYSTIYR---GDD---EGDGYVGSLDGQQPIEVIVESSTSVIFEDMSVRSANDPVMTVSADSSDVFFDNCGFSSVDAGTCVIQTEDPNVVNVDDD-ELELVDTCYVKV 1212
WQ FE+ D VT + ++MKGTGS A GF L +ARF GT DNP+DT+YV S + EW+ YP+FV EG DQ+AIMGAICAVKKASFDGVDCVG D A G V + W G + + L F +P T D I G TD + D S RL +I + ++D+ E+S +T + LG+ + + T + + DGDA+VVRDSQ+++ID+GPYDD YL P+ + +RGTG++VD+S+ V++RR+ +H + S +TI G+D EG+G VGSLDGQQPIEV+VESST V F+DM V+S NDPV+ VS SS V FDNCGFS+V+ GTCVIQT+ + V DD EL L TCYVKV
Sbjct: 575 WQRFELGT-IDDPVTEIAIVMKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEWNSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVHLHAWFSIDDSPYTTDIILEDGAAGKTDTAAMIVMDNISN-----ARLSNTWI---------IGNYDS-----ETSNDTPTVHGLGSVGLSITGSTNITCIDASVYSSDGDALVVRDSQMINIDSGPYDD-DYL-------------PWTIGQSRGTGIVVDSSDSVWVRRYTTYDNGVAGIHVSGSNNFTFEATIADKCWGEDCVLEGEGNVGSLDGQQPIEVVVESSTLVKFQDMKVQSVNDPVIVVSG-SSGVSFDNCGFSNVETGTCVIQTDTTSEVTTGDDPELSLDGTCYVKV 964
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 266 bits (680), Expect = 2.910e-76 Identity = 176/425 (41.41%), Postives = 239/425 (56.24%), Query Frame = 1
Query: 1 ADWQTFEIQ--LDSDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDTYYVASPRMEEWDG--SLYPEFVGEGRSDQEAIMGAICAVKKASFDGVDCVGEDPTANGTVQL---LWIRAGWVSYATCSSLLLRFC--NPTRDGI--SPGELANTDPFRLRKRDIPSTFTTCVLRLQVEFIEEVQPEEIPVKSFDTP--DNIGESSMETVSPFRLGNAIKCMLPNVEYTYGWIENMDGDAIVVRDSQLVSIDAGPYDDAKYLVSLSALEPCSESKPYWVSSNRGTGLLVDNSEDVYIRRHAVSMHFARSVMII---NYS---TIYRGDDEGDGYVGSLDGQQPIEVIVESSTSVIFEDMSVRSANDPVMTVSADSSDVFFDNCGFSSVDAGTCVIQTEDPNVVNVD--DDELELVDTCYVKV 1212
ADWQ+F++ LD+DQ +T + ++++GTGSGA GF ++D R MGT DNPTDT YV S +E W G YP+FV EG DQ+ IM AIC VKKASFDGVDCVG D A GTV L W G + + L F +P GI G TD + D S T + ++ + P S DTP +G + + V N+ I +DGDA+VVRDS ++SIDAG Y++ P+ ++S+RGTGL+VD+ + +Y+RRH + + + I+ N++ TI G+G VG+LDGQQPI+VI+ESST V F D+ V+S+NDP+M VS DSS V F+N G S V+A CVIQ +DP+ V +D +DEL L +CYVKV
Sbjct: 764 ADWQSFDLSQHLDADQFLTEINIVVQGTGSGAPGFAMLDIRVMGTAIDNPTDTVYVGSTFIERWTGLTDRYPDFVAEGTGDQKIIMEAICTVKKASFDGVDCVGGDDAATGTVVLPQGSWYVDGNIFMKSGVFLDGSFSEDSPYFTGIILEEGAAGKTDIDAMVVMDGISNAMTDNIWIRGHYD--------PDTSNDTPAVPGLGSTGLSVVGS-----------TNITLRDAEIRFLDGDALVVRDSNMISIDAGEYEELY--------------SPWSLASSRGTGLIVDSCDSIYVRRHTLYENGVAGIHIVGTNNFTFDATIGEESTVGEGNVGNLDGQQPIDVIIESSTLVTFNDLRVQSSNDPIMMVS-DSSTVSFNNLGLSLVEADACVIQADDPSTVTIDADEDELTLDGSCYVKV 1154
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 244 bits (623), Expect = 2.130e-68 Identity = 168/411 (40.88%), Postives = 239/411 (58.15%), Query Frame = 1
Query: 34 SDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDTYYVASPRMEEWDGSLYPEFVGEGRSDQEAIMGAICAVKKASFDGVDCVGEDPTANGTVQLLWIRAGWVS---YATCSSLLLRFCNPTRDGISPGELANTDPFR----LRKRDIPSTFTTCVLRLQVEFIEEVQPEEIPVKSFDTPDNIGESSMETVSPFRLGNAIKCMLPNVEYTYGWIE--NMDGDAIVVRDSQLVSIDAGPYDDAKYLVSLSALEPCSESKPYWVSSNRGTGLLVDNSEDVYIRR-----HAVS-MHFARSVMIINYSTIYRGD-DEGDGYVGSLDGQQPIEVIVESSTSVIFEDMSVRSANDPVMTVSADSSDVFFDNCGFSSVDAGTCVIQTEDPNVVNVDDDELELV--DTCYVKV 1212
++Q VT + + MKGTGSGA GF ++DA +GT DNP+DT++V S +E W G YP+FVG G DQ AI GAIC VKK ++DGV+CV D TA GTV L W A +V+ + LLL G + DP L + +T ++ + + I + E++ ++ P+ G S++ LG+A ++ + T ++ GDA+VVRDS LV+IDAG YD+ +YL P+ + + GTGL+VD S+ +++RR +AV+ +H S +TI + EG+G VGS+DGQQPIEVIV +S+ V F+DM V+S NDPVMT++ DS+ V F N G+S+V +GTC IQT+DP+ V +D DE ELV TCYVKV
Sbjct: 787 ANQYVTSIGIEMKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYWGGDGYPDFVGSGSGDQNAINGAICGVKKGTYDGVNCVDVDDTATGTVDLSW-GAYYVNGNIFMQSGVLLL------------GSFGDDDPHTTDIVLEEGAEGNTDIDAIVVM--DGIRDAWIEKVWIQGNYDPETDGISAVSG-----LGSACLSVVNSQNITCEGVDIRYCSGDALVVRDSTLVNIDAGRYDE-EYL-------------PWTIGLSGGTGLIVDTSDSIWVRRTTFYENAVAGLHIMGSNNFTFEATIASEEGSEGEGNVGSVDGQQPIEVIVGTSSLVTFQDMKVQSVNDPVMTIT-DSTTVSFTNGGYSNVPSGTCTIQTDDPSTVTIDADEDELVLEGTCYVKV 1162
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.590e-53 Identity = 153/412 (37.14%), Postives = 212/412 (51.46%), Query Frame = 1
Query: 1 ADWQTFEIQLDSDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDTYYVASPRMEEWDGSLYPEFVGEGRSDQEAIMGAICAVKKASFDGVDCVGEDPTANGTVQLLWIRAGWVSYATCSSLLLR----FCNPTRDGISPGELANTDPFRLRKRDIPSTFTTCVLRLQVEFIEEVQPEEIPVKSFDTPDNIGESSMETVSPFRLGNAIKCMLPNVEYTYG--WIENMDGDAIVVRDSQLVSIDAGPYDDAKYLVSLSALEPCSESKPYWVSSNRGTGLLVDNSEDVYIRRHAVSMHFARSVMIINYSTIYRGDDEGDGYVGSLDGQQPIEVIVESSTSVIFEDMSVRSANDPVMTVSADSSDVFFDNCGFSSVDAGTCVIQTEDPNVVNVDDDELELV--DTCYVKV 1212
A++Q+ ++ + Q VT + + ++G SG S F LIDAR +GT DNPTDT+YV S + EW G P+FVG+G DQ AI AICAVKK ++DGVDCVG D +A GTV L + Y ++ ++ R SP N D F + P T + ++ I + + ++ + PD +S LG+ ++ + T W++ DGDA+VVR S +V+IDAG YD+ K + C+ P + S IY G G VGSL+GQQPIEVIVE S+ + F++M VRS NDPVMT+S DS+ V F N G SV +GTC+IQT+DP+ V +D DE EL+ TCYVKV
Sbjct: 606 AEYQSIDLTGFAGQYVTSIAVHVEG--SGGSEFPLIDARILGTKIDNPTDTFYVGSTFIPEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVVL-----AFGEYHVDGNIFMKSGVFLKGRYRFDDSP---YNIDIFL--EEGAPGN-TDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVP----GLGSTGVSIVDSQNITCADTWVDFCDGDAMVVRSSSVVNIDAGYYDEYK----ATGWRVCTSWTPTTLPSK---------------------------------PPIYVGSQ---GQVGSLEGQQPIEVIVEGSSLINFQEMWVRSVNDPVMTIS-DSTAVSFTNDGSYSVASGTCIIQTDDPSTVTIDPDEDELILEGTCYVKV 959 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1022.373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1022.373.1 >prot_D-herbacea_F_contig1022.373.1 ID=prot_D-herbacea_F_contig1022.373.1|Name=mRNA_D-herbacea_F_contig1022.373.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=405bp ADWQTFEIQLDSDQTVTGVRLIMKGTGSGASGFHLIDARFMGTGADNPTDback to top mRNA from alignment at D-herbacea_F_contig1022:35798..66383+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1022.373.1 ID=mRNA_D-herbacea_F_contig1022.373.1|Name=mRNA_D-herbacea_F_contig1022.373.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=30586bp|location=Sequence derived from alignment at D-herbacea_F_contig1022:35798..66383+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1022:35798..66383+ >mRNA_D-herbacea_F_contig1022.373.1 ID=mRNA_D-herbacea_F_contig1022.373.1|Name=mRNA_D-herbacea_F_contig1022.373.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2430bp|location=Sequence derived from alignment at D-herbacea_F_contig1022:35798..66383+ (Desmarestia herbacea DmunF female)back to top |