mRNA_D-herbacea_F_contig102.344.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.344.1
Unique NamemRNA_D-herbacea_F_contig102.344.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:235066..236695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog2880.D8LKT1
KEGG koko:K09054,ko:K14165,ko:K14819
KEGG Pathwayko04141,ko05010,map04141,map05010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03000,ko03009
Exons2
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927432.773689-CDS-D-herbacea_F_contig102:235065..2351311622927432.773689-CDS-D-herbacea_F_contig102:235065..235131Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 235066..235131 -
1690790167.5835593-CDS-D-herbacea_F_contig102:235065..2351311690790167.5835593-CDS-D-herbacea_F_contig102:235065..235131Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 235066..235131 -
1622927432.788186-CDS-D-herbacea_F_contig102:236407..2366951622927432.788186-CDS-D-herbacea_F_contig102:236407..236695Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 236408..236695 -
1690790167.5965538-CDS-D-herbacea_F_contig102:236407..2366951690790167.5965538-CDS-D-herbacea_F_contig102:236407..236695Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 236408..236695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.344.1prot_D-herbacea_F_contig102.344.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 235066..236695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.344.1

>prot_D-herbacea_F_contig102.344.1 ID=prot_D-herbacea_F_contig102.344.1|Name=mRNA_D-herbacea_F_contig102.344.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=118bp
SSFSLSFASCLLEGHVDEMSSLTAVLSQDDGGRDSSITGRSGAQSPGTGI
AVDPVVSKELLPANVLYTCKMCRRVVFNEGDVESHEAAQQSFHRRKLKGA
ASKGVCSSVFLAELLPW*
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mRNA from alignment at D-herbacea_F_contig102:235066..236695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.344.1 ID=mRNA_D-herbacea_F_contig102.344.1|Name=mRNA_D-herbacea_F_contig102.344.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1630bp|location=Sequence derived from alignment at D-herbacea_F_contig102:235066..236695- (Desmarestia herbacea DmunF female)
TCCAGCTTCTCTCTTTCTTTCGCCTCTTGTTTACTTGAGGGACACGTGGA
TGAGATGTCTTCTCTAACAGCAGTGCTTTCTCAGGACGATGGAGGGCGGG
ACTCGAGTATAACAGGACGAAGCGGTGCCCAAAGTCCTGGCACCGGCATC
GCTGTTGATCCCGTTGTTTCTAAAGAGTTGCTGCCGGCGAACGTGCTGTA
CACTTGCAAGATGTGCAGGCGTGTGGTGTTCAACGAGGGCGACGTGGAGA
GCCACGAAGCGGCGCAGCAGAGCTTTCACCGAAGAAAGGTGCTACACCAA
AAAGACGTGCTACAGACAGTAGTAGTACTGTACCAAGAAGTAACAGCAGA
TGTGTGCGTGAGCCCCTTCTGGTTGTGCACCAGATAACCACGCGTTTCTT
GCCTGGCGGGACTGTCAGATTTGAATGTTGCCACTTTTGCCTCAGGCTGT
TTTGTGTTGTGGTATCATCATACTGCTCAACACTGCAGTTGCTGCGTATG
ATAAGAGATAAAGCTCTACGACAAGGTCAATTATTTATAGAGATTCTTCG
AATCCATGTTTATTTAGATGTGTGGTCGGGTAGTATGCTCTGGTGCGCGC
AGTCACTGTCGAAAGTATACATTCAATCGGGTGACGGTGCCTCCCGATAT
TCAAACGAATTCAAACGAAATGAATTGACGTAAAGAAGGCCACAGAGCTG
TCCTACGTGACAACATTAGTATTATAAGTACAGTAGTACAGTAGTATCGA
TAGTATCTATGATACCATATATTATGCTGCAGGTTGTGCGTAGAGCTTTC
GTTGTCGCGGTAGAGGAAGGCTCGTGGGGGTGTTATTTTTGCGTGCATAT
TATGGCTGTTCGTCGTGTATCGCAGGCTGCGTTATTTCTTCTGTGTTTGG
ACTACTATTAACCCAAAGAAAAACAGGCAAGAGATGGCAGACACTAACTG
CTGCATCGGTGTTGCCACCGCATACAGAACATGCACAACAACAACAGTAG
TCAGTGTTGTGTAGACCCACCGCATCTGCGACTGCCCGGAAGCCATCGAG
CCGGCGGCGTACGGCGTACACACCTATTCCCAAGGACTCCGTCAACTGAT
CGTTGGCCCCCGCGTATCCACACGTAGTTGGCCATTTTTGTTGCCGCAAA
GCAGGCAGTGTCAGGACGACCTGATAGGTGTTCGATTGTGTTTCGCCTCT
CAACCCAAACCTGTACGCGACGCATCGGTAGACTCCTGCTGTAGACAGTG
ATTTGGGGTGGCGCGCGCACTGGTGATCCTTTCATTGCATGCACCGGGAG
ATCTCCCTCGCATGCAAGAATTTCCGCTGCTTGCCCGAAGCAAATATCTC
CTCGTAAAACCCTACACAAGGGTCAACTTCCTGCAGAGCTCCAACTAGCG
TTAGGTGGAGCGTTGCTATTGTTTTGTCAGTGAGAAATCGCGACTCCCAA
CTATTGTTGTGCTGAAAATTCATGTTTCCACCCGCTGATGTCTTCACTGT
TACCCCGGCGGTAATTCTTGTCTTTTTCGTTTGGTGCCTCGCCCCCTGTG
AATACCACCTGCAGTTGAAAGGAGCAGCGTCGAAGGGCGTGTGCTCGTCC
GTCTTCCTCGCGGAGCTTTTACCGTGGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:235066..236695-

>mRNA_D-herbacea_F_contig102.344.1 ID=mRNA_D-herbacea_F_contig102.344.1|Name=mRNA_D-herbacea_F_contig102.344.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=708bp|location=Sequence derived from alignment at D-herbacea_F_contig102:235066..236695- (Desmarestia herbacea DmunF female)
TCCAGCTTCTCTCTTTCTTTCGCCTCTTGTTTACTTGAGGGACACGTGGA
TGAGATGTCTTCTCTAACAGCAGTGCTTTCTCAGGACGATGGAGGGCGGG
ACTCGAGTATAACAGGACGAAGCGGTGCCCAAAGTCCTGGCACCGGCATC
GCTGTTGATCCCGTTGTTTCTAAAGAGTTGCTGCCGGCGAACGTGCTGTA
CACTTGCAAGATGTGCAGGCGTGTGGTGTTCAACGAGGGCGACGTGGAGA
GCCACGAAGCGGCGCAGCAGAGCTTTCACCGAAGAAAGTCCAGCTTCTCT
CTTTCTTTCGCCTCTTGTTTACTTGAGGGACACGTGGATGAGATGTCTTC
TCTAACAGCAGTGCTTTCTCAGGACGATGGAGGGCGGGACTCGAGTATAA
CAGGACGAAGCGGTGCCCAAAGTCCTGGCACCGGCATCGCTGTTGATCCC
GTTGTTTCTAAAGAGTTGCTGCCGGCGAACGTGCTGTACACTTGCAAGAT
GTGCAGGCGTGTGGTGTTCAACGAGGGCGACGTGGAGAGCCACGAAGCGG
CGCAGCAGAGCTTTCACCGAAGAAAGTTGAAAGGAGCAGCGTCGAAGGGC
GTGTGCTCGTCCGTCTTCCTCGCGGAGCTTTTACCGTGGTGATTGAAAGG
AGCAGCGTCGAAGGGCGTGTGCTCGTCCGTCTTCCTCGCGGAGCTTTTAC
CGTGGTGA
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