mRNA_D-herbacea_F_contig102.358.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.358.1
Unique NamemRNA_D-herbacea_F_contig102.358.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:524742..524921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.6208968-CDS-D-herbacea_F_contig102:524741..5248201622927430.6208968-CDS-D-herbacea_F_contig102:524741..524820Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 524742..524820 +
1690790166.2769458-CDS-D-herbacea_F_contig102:524741..5248201690790166.2769458-CDS-D-herbacea_F_contig102:524741..524820Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 524742..524820 +
1622927430.6303935-CDS-D-herbacea_F_contig102:524841..5249211622927430.6303935-CDS-D-herbacea_F_contig102:524841..524921Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 524842..524921 +
1690790166.286089-CDS-D-herbacea_F_contig102:524841..5249211690790166.286089-CDS-D-herbacea_F_contig102:524841..524921Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 524842..524921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.358.1prot_D-herbacea_F_contig102.358.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 524742..524921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.358.1

>prot_D-herbacea_F_contig102.358.1 ID=prot_D-herbacea_F_contig102.358.1|Name=mRNA_D-herbacea_F_contig102.358.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=53bp
NSSHTSPSIHRPPSPPPPPQTTWRLVSGFRAISRRIYNDPNKHAQVRSEV
VQY
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mRNA from alignment at D-herbacea_F_contig102:524742..524921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.358.1 ID=mRNA_D-herbacea_F_contig102.358.1|Name=mRNA_D-herbacea_F_contig102.358.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=180bp|location=Sequence derived from alignment at D-herbacea_F_contig102:524742..524921+ (Desmarestia herbacea DmunF female)
AATTCATCTCATACTTCACCGTCGATTCATCGTCCTCCATCTCCTCCACC
CCCGCCGCAGACAACGTGGCGTCTCGTTAGTGAAATTGGTGATGGCGCCT
GCGGCTTTCGCGCCATATCAAGACGCATATACAACGACCCCAACAAACAC
GCCCAAGTACGCTCCGAAGTTGTACAGTAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:524742..524921+

>mRNA_D-herbacea_F_contig102.358.1 ID=mRNA_D-herbacea_F_contig102.358.1|Name=mRNA_D-herbacea_F_contig102.358.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=318bp|location=Sequence derived from alignment at D-herbacea_F_contig102:524742..524921+ (Desmarestia herbacea DmunF female)
AATTCATCTCATACTTCACCGTCGATTCATCGTCCTCCATCTCCTCCACC
CCCGCCGCAGACAACGTGGCGTCTCGTTAAATTCATCTCATACTTCACCG
TCGATTCATCGTCCTCCATCTCCTCCACCCCCGCCGCAGACAACGTGGCG
TCTCGTTAGCGGCTTTCGCGCCATATCAAGACGCATATACAACGACCCCA
ACAAACACGCCCAAGTACGCTCCGAAGTTGTACAGTACGCGGCTTTCGCG
CCATATCAAGACGCATATACAACGACCCCAACAAACACGCCCAAGTACGC
TCCGAAGTTGTACAGTAC
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