mRNA_D-herbacea_M_contig97.16106.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig97.16106.1
Unique NamemRNA_D-herbacea_M_contig97.16106.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig97.16106.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.660e-12
Identity = 57/148 (38.51%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:  130 TNLADWGQALGEALGSDPEVSRFTTLGKYGVVLSLGEGSERTFEPPVVDFGDVATVAVV------AGGRRREFSG------------------------GAGGDRQAVEGCMNGDVFGAEVEREEQLEEPKYMPDGYDFVGERRAVIN 483
            + L  W  +LG AL S+ EV  + T GKYGVVLSLGE  E    PPVVDFGDVATV          GGR ++                           GAG  +   +   NG + G E +R+E+ E+ +Y+P GY+F  ERRAV++
Sbjct:   95 SKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPE----PPVVDFGDVATVVPSPREGGRGGGRGQQPLAENGEDQAAERPSEWGATQHDDSVWGAGWGQNGQQTLGNGGMQGRE-DRDEEEEDGEYLPQGYNFSRERRAVMH 237
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BLAST of mRNA_D-herbacea_M_contig97.16106.1 vs. uniprot
Match: A0A6H5L991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L991_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-7
Identity = 44/87 (50.57%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:   40 SPQPQPGRSGGSVLLNGASSSSDLSESPRYTNLAD-WGQALGEALGSDPEVSRFTTLGKYGVVLSLGEGSERTFEPPVVDFGDVATV 297
            SP   P   GG   L   SS  D  +S   ++  D W  +LG AL S+ EV  + T GKYGVVLSLGE  E    PPVVDFGDVATV
Sbjct:  295 SPNCSPASPGGFRPLPLGSSVGD--DSGHVSSKLDRWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPE----PPVVDFGDVATV 375
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig97.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRN2_ECTSI2.660e-1238.51RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5L991_9PHAE1.150e-750.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig97contigD-herbacea_M_contig97:256495..257881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog2880.D7FRN2
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756,ko:K13983,ko:K18422
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG1112@1,KOG1804@2759
EC3.6.4.13,4.3.2.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Exons3
Model size655
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig97.16106.1prot_D-herbacea_M_contig97.16106.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig97 256497..257881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935796.1509414-CDS-D-herbacea_M_contig97:256496..2567011622935796.1509414-CDS-D-herbacea_M_contig97:256496..256701Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 256497..256701 -
1690880707.9136486-CDS-D-herbacea_M_contig97:256496..2567011690880707.9136486-CDS-D-herbacea_M_contig97:256496..256701Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 256497..256701 -
1622935796.1699922-CDS-D-herbacea_M_contig97:257121..2573811622935796.1699922-CDS-D-herbacea_M_contig97:257121..257381Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 257122..257381 -
1690880707.93293-CDS-D-herbacea_M_contig97:257121..2573811690880707.93293-CDS-D-herbacea_M_contig97:257121..257381Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 257122..257381 -
1622935796.2414658-CDS-D-herbacea_M_contig97:257695..2578811622935796.2414658-CDS-D-herbacea_M_contig97:257695..257881Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 257696..257881 -
1690880707.942627-CDS-D-herbacea_M_contig97:257695..2578811690880707.942627-CDS-D-herbacea_M_contig97:257695..257881Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 257696..257881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig97.16106.1

>prot_D-herbacea_M_contig97.16106.1 ID=prot_D-herbacea_M_contig97.16106.1|Name=mRNA_D-herbacea_M_contig97.16106.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=217bp
QGQGTGEAGRHFVSPQPQPGRSGGSVLLNGASSSSDLSESPRYTNLADWG
QALGEALGSDPEVSRFTTLGKYGVVLSLGEGSERTFEPPVVDFGDVATVA
VVAGGRRREFSGGAGGDRQAVEGCMNGDVFGAEVEREEQLEEPKYMPDGY
DFVGERRAVINNRPSSSHAPALLPHATPMAPVGSRSDARTRRGNINSVDR
APSRPAMNLAERGNGLG
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mRNA from alignment at D-herbacea_M_contig97:256495..257881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig97.16106.1 ID=mRNA_D-herbacea_M_contig97.16106.1|Name=mRNA_D-herbacea_M_contig97.16106.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1387bp|location=Sequence derived from alignment at D-herbacea_M_contig97:256495..257881- (Desmarestia herbacea DmunM male)
CAAGGGCAGGGTACGGGGGAAGCGGGGAGACACTTCGTGTCTCCGCAGCC
ACAGCCGGGGCGGTCGGGTGGTTCAGTGTTGTTGAACGGGGCGAGCAGTA
GCAGCGACTTATCTGAGTCGCCGCGGTACACTAACTTGGCCGACTGGGGG
CAGGCTCTGGGAGAGGCGCTTGGGTCCGACCCAGAGGTGATGGGCGCATA
ATTCCTTTCTCTTCCGTGTATAGTGCCGTGCTGTAACGCCTAAAATTAAA
AATTTGCGTGTGTGTGTTTGAGGGTGTGTGTGTGGTTGCTATAGAATACC
GGATGCATGCATACATGTATGTAAGTTTGTAAACTGTTTTTACGCCTTGG
TTGCACCAGGTGTCGTATTTAAATTGGCAGGCAAGAAGCGGTTACAATGT
TGATTGTATTCGGCCGCAATTTATCCGAAGGTCTAAAACGGTTGCTTTTT
CCTCATTGGTTCGGACACGTCGCCTTGGTTGTCCGTTTCCCCGCGGCCAG
GTGAGCCGCTTCACGACCCTCGGGAAGTACGGTGTTGTTCTCAGCCTAGG
AGAGGGCTCGGAACGGACCTTCGAACCTCCTGTGGTTGATTTTGGTGACG
TCGCCACCGTTGCCGTGGTGGCCGGTGGAAGGCGCCGAGAATTTTCTGGT
GGCGCTGGTGGTGACAGGCAGGCAGTGGAAGGATGCATGAACGGGGACGT
GTTTGGCGCGGAAGTGGAGAGGGAAGAGCAGCTAGAGGAACCGAAGTACA
TGCCTGATGGGTGAGGAAAAATGTCCAGGAAACATGCGACGAAAGTGGAA
ATTGCGTGTGGGGTGTGTGTGTGTGTGTGTGTGTGTTTGCCTGGACCCGA
CTCTGTGGAACCGAGAAATGTTGTGCTTTTTGTTAACTTGCGTCCTTTCA
TTCTTGTGGCGAGATTCATGTTGCCTCAAGTTTCTAAATAAGAAATGTAG
TCATCTGAATTACTGTTGTTGTCTTCGTCAGCAGCAACGCGCTCTGTTTT
TTTGTCGTGCGTAGGCTTTAGTCGTAAACGTGACCTCGCAACAGGGAGCG
GTACGGTACAGCACAGCACAGTATCTCTTTGAGGAGATCGCCTATGGAGC
ACATAGCCACTAACGGTTGTGCCGCCTCGATGGTTTTTTCGCCTCCTTTG
AAATGTGTGTCCATTCTTGTCGAACAAAAGGTACGACTTTGTGGGAGAAC
GGAGGGCCGTGATCAACAACAGGCCCTCTTCCTCTCACGCCCCAGCGCTG
CTGCCACACGCGACACCGATGGCTCCGGTGGGGTCACGAAGCGATGCTCG
CACACGAAGAGGGAACATCAACAGTGTTGATCGCGCTCCGAGCCGTCCCG
CGATGAATCTCGCTGAACGAGGGAATGGACTTGGGGG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig97:256495..257881-

>mRNA_D-herbacea_M_contig97.16106.1 ID=mRNA_D-herbacea_M_contig97.16106.1|Name=mRNA_D-herbacea_M_contig97.16106.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1302bp|location=Sequence derived from alignment at D-herbacea_M_contig97:256495..257881- (Desmarestia herbacea DmunM male)
CAAGGGCAGGGTACGGGGGAAGCGGGGAGACACTTCGTGTCTCCGCAGCC
ACAGCCGGGGCGGTCGGGTGGTTCAGTGTTGTTGAACGGGGCGAGCAGTA
GCAGCGACTTATCTGAGTCGCCGCGGTACACTAACTTGGCCGACTGGGGG
CAGGCTCTGGGAGAGGCGCTTGGGTCCGACCCAGAGCAAGGGCAGGGTAC
GGGGGAAGCGGGGAGACACTTCGTGTCTCCGCAGCCACAGCCGGGGCGGT
CGGGTGGTTCAGTGTTGTTGAACGGGGCGAGCAGTAGCAGCGACTTATCT
GAGTCGCCGCGGTACACTAACTTGGCCGACTGGGGGCAGGCTCTGGGAGA
GGCGCTTGGGTCCGACCCAGAGGTGAGCCGCTTCACGACCCTCGGGAAGT
ACGGTGTTGTTCTCAGCCTAGGAGAGGGCTCGGAACGGACCTTCGAACCT
CCTGTGGTTGATTTTGGTGACGTCGCCACCGTTGCCGTGGTGGCCGGTGG
AAGGCGCCGAGAATTTTCTGGTGGCGCTGGTGGTGACAGGCAGGCAGTGG
AAGGATGCATGAACGGGGACGTGTTTGGCGCGGAAGTGGAGAGGGAAGAG
CAGCTAGAGGAACCGAAGTACATGCCTGATGGGTGAGCCGCTTCACGACC
CTCGGGAAGTACGGTGTTGTTCTCAGCCTAGGAGAGGGCTCGGAACGGAC
CTTCGAACCTCCTGTGGTTGATTTTGGTGACGTCGCCACCGTTGCCGTGG
TGGCCGGTGGAAGGCGCCGAGAATTTTCTGGTGGCGCTGGTGGTGACAGG
CAGGCAGTGGAAGGATGCATGAACGGGGACGTGTTTGGCGCGGAAGTGGA
GAGGGAAGAGCAGCTAGAGGAACCGAAGTACATGCCTGATGGGTACGACT
TTGTGGGAGAACGGAGGGCCGTGATCAACAACAGGCCCTCTTCCTCTCAC
GCCCCAGCGCTGCTGCCACACGCGACACCGATGGCTCCGGTGGGGTCACG
AAGCGATGCTCGCACACGAAGAGGGAACATCAACAGTGTTGATCGCGCTC
CGAGCCGTCCCGCGATGAATCTCGCTGAACGAGGGAATGGACTTGGGGTA
CGACTTTGTGGGAGAACGGAGGGCCGTGATCAACAACAGGCCCTCTTCCT
CTCACGCCCCAGCGCTGCTGCCACACGCGACACCGATGGCTCCGGTGGGG
TCACGAAGCGATGCTCGCACACGAAGAGGGAACATCAACAGTGTTGATCG
CGCTCCGAGCCGTCCCGCGATGAATCTCGCTGAACGAGGGAATGGACTTG
GG
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