mRNA_D-herbacea_M_contig97.16107.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig97.16107.1
Unique NamemRNA_D-herbacea_M_contig97.16107.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig97.16107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig97contigD-herbacea_M_contig97:257927..258435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size509
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig97.16107.1prot_D-herbacea_M_contig97.16107.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig97 258001..258399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935793.5373724-UTR-D-herbacea_M_contig97:257926..2580001622935793.5373724-UTR-D-herbacea_M_contig97:257926..258000Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 257927..258000 +
1690880706.6165051-UTR-D-herbacea_M_contig97:257926..2580001690880706.6165051-UTR-D-herbacea_M_contig97:257926..258000Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 257927..258000 +
1622935793.5684896-UTR-D-herbacea_M_contig97:258399..2584351622935793.5684896-UTR-D-herbacea_M_contig97:258399..258435Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 258400..258435 +
1690880706.6399155-UTR-D-herbacea_M_contig97:258399..2584351690880706.6399155-UTR-D-herbacea_M_contig97:258399..258435Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig97 258400..258435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935793.5519776-CDS-D-herbacea_M_contig97:258000..2583991622935793.5519776-CDS-D-herbacea_M_contig97:258000..258399Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 258001..258399 +
1690880706.6268153-CDS-D-herbacea_M_contig97:258000..2583991690880706.6268153-CDS-D-herbacea_M_contig97:258000..258399Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig97 258001..258399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig97.16107.1

>prot_D-herbacea_M_contig97.16107.1 ID=prot_D-herbacea_M_contig97.16107.1|Name=mRNA_D-herbacea_M_contig97.16107.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=133bp
MARRLSKQEATPCQWGRATILRLDEARAGPASLHAAGAWTVAAATVAALI
AAVDYVDAACPSCPPLRSRRPCAAMLPAFVEVQTPVPEILALARLAEEYP
LKTAVEWARSGAKVAQHQGLALSAALALVAPI*
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mRNA from alignment at D-herbacea_M_contig97:257927..258435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig97.16107.1 ID=mRNA_D-herbacea_M_contig97.16107.1|Name=mRNA_D-herbacea_M_contig97.16107.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=509bp|location=Sequence derived from alignment at D-herbacea_M_contig97:257927..258435+ (Desmarestia herbacea DmunM male)
CCCAGGAACAGAACCCTGCGCGTCGGCCATGGGGTGAGGAACGCTCTGCT
GGAAGAAAGTGTGTGATCCACTCCATGGCGAGACGGTTGTCGAAGCAGGA
GGCGACGCCATGTCAGTGGGGAAGGGCGACGATACTCCGATTGGACGAGG
CAAGGGCCGGGCCTGCCAGCCTACATGCTGCTGGTGCATGGACGGTTGCT
GCTGCAACGGTTGCTGCATTGATTGCTGCTGTTGATTATGTTGATGCTGC
ATGCCCATCGTGCCCGCCGCTCCGTTCCAGGCGCCCGTGTGCGGCGATGC
TCCCTGCGTTTGTGGAGGTCCAGACACCCGTCCCGGAAATCCTTGCGTTG
GCACGGCTTGCCGAGGAGTACCCGCTGAAGACTGCCGTAGAGTGGGCCAG
GTCTGGGGCGAAAGTGGCGCAACACCAGGGACTGGCCCTCTCGGCCGCCT
TGGCCCTTGTGGCACCGATTTAGGCAATATCGAGGGGGGTGGCGGATGGC
ACAGCGGAG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig97:257927..258435+

>mRNA_D-herbacea_M_contig97.16107.1 ID=mRNA_D-herbacea_M_contig97.16107.1|Name=mRNA_D-herbacea_M_contig97.16107.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=798bp|location=Sequence derived from alignment at D-herbacea_M_contig97:257927..258435+ (Desmarestia herbacea DmunM male)
ATGGCGAGACGGTTGTCGAAGCAGGAGGCGACGCCATGTCAGTGGGGAAG
GGCGACGATACTCCGATTGGACGAGGCAAGGGCCGGGCCTGCCAGCCTAC
ATGCTGCTGGTGCATGGACGGTTGCTGCTGCAACGGTTGCTGCATTGATT
GCTGCTGTTGATTATGTTGATGCTGCATGCCCATCGTGCCCGCCGCTCCG
TTCCAGGCGCCCGTGTGCGGCGATGCTCCCTGCGTTTGTGGAGGTCCAGA
CACCCGTCCCGGAAATCCTTGCGTTGGCACGGCTTGCCGAGGAGTACCCG
CTGAAGACTGCCGTAGAGTGGGCCAGGTCTGGGGCGAAAGTGGCGCAACA
CCAGGGACTGGCCCTCTCGGCCGCCTTGGCCCTTGTGGCACCGATTTAGA
TGGCGAGACGGTTGTCGAAGCAGGAGGCGACGCCATGTCAGTGGGGAAGG
GCGACGATACTCCGATTGGACGAGGCAAGGGCCGGGCCTGCCAGCCTACA
TGCTGCTGGTGCATGGACGGTTGCTGCTGCAACGGTTGCTGCATTGATTG
CTGCTGTTGATTATGTTGATGCTGCATGCCCATCGTGCCCGCCGCTCCGT
TCCAGGCGCCCGTGTGCGGCGATGCTCCCTGCGTTTGTGGAGGTCCAGAC
ACCCGTCCCGGAAATCCTTGCGTTGGCACGGCTTGCCGAGGAGTACCCGC
TGAAGACTGCCGTAGAGTGGGCCAGGTCTGGGGCGAAAGTGGCGCAACAC
CAGGGACTGGCCCTCTCGGCCGCCTTGGCCCTTGTGGCACCGATTTAG
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