mRNA_D-herbacea_M_contig96.16046.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig96.16046.1
Unique NamemRNA_D-herbacea_M_contig96.16046.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig96.16046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig96contigD-herbacea_M_contig96:350023..350964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size667
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig96.16046.1prot_D-herbacea_M_contig96.16046.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig96 350023..350803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935780.1527503-CDS-D-herbacea_M_contig96:350022..3503581622935780.1527503-CDS-D-herbacea_M_contig96:350022..350358Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 350023..350358 +
1690880701.122665-CDS-D-herbacea_M_contig96:350022..3503581690880701.122665-CDS-D-herbacea_M_contig96:350022..350358Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 350023..350358 +
1622935780.1688964-CDS-D-herbacea_M_contig96:350635..3508031622935780.1688964-CDS-D-herbacea_M_contig96:350635..350803Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 350636..350803 +
1690880701.1561213-CDS-D-herbacea_M_contig96:350635..3508031690880701.1561213-CDS-D-herbacea_M_contig96:350635..350803Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 350636..350803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935780.1895535-UTR-D-herbacea_M_contig96:350803..3509641622935780.1895535-UTR-D-herbacea_M_contig96:350803..350964Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 350804..350964 +
1690880701.1743739-UTR-D-herbacea_M_contig96:350803..3509641690880701.1743739-UTR-D-herbacea_M_contig96:350803..350964Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig96 350804..350964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig96.16046.1

>prot_D-herbacea_M_contig96.16046.1 ID=prot_D-herbacea_M_contig96.16046.1|Name=mRNA_D-herbacea_M_contig96.16046.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=168bp
ASIGFTLTLEHRSKAQGGNKKGKTGGAIENNKRYGAKGVLPKQRRWREGK
LAGSVKIRRHLLSRCAVKSGSSRTHGSALGGSSSPDGPSTSIGGAGVAES
THSSTSVGESAQATRCRLSFARATQCGCMMVKLGHASVVVSWRRCMMISA
LLLHVEHNNLRAREHDD*
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mRNA from alignment at D-herbacea_M_contig96:350023..350964+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig96.16046.1 ID=mRNA_D-herbacea_M_contig96.16046.1|Name=mRNA_D-herbacea_M_contig96.16046.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=942bp|location=Sequence derived from alignment at D-herbacea_M_contig96:350023..350964+ (Desmarestia herbacea DmunM male)
GCGAGCATTGGGTTCACCCTAACCCTCGAGCATAGGTCAAAAGCACAAGG
AGGGAACAAGAAGGGCAAGACGGGAGGAGCGATAGAGAACAATAAACGGT
ACGGGGCAAAAGGTGTGCTCCCCAAGCAACGACGATGGCGGGAAGGGAAA
CTCGCAGGTTCTGTGAAAATACGTAGACACCTCTTGTCAAGGTGCGCGGT
CAAGTCAGGCTCCTCGCGTACGCATGGCTCCGCTTTAGGTGGTAGCTCTT
CGCCAGATGGGCCGTCAACCTCTATTGGCGGAGCTGGCGTTGCCGAAAGC
ACACACAGCAGTACGAGCGTGGGCGAGAGTGCCCAGGTAGGTTGGATGGG
TTCGAGTACAAATACGTACTCCGCTCGAGGGACTTACTCTGTAAAATAGC
CTCTTCGTCAGAAAGAAGTACGTTTTTTGTATCCATACTACTTCGTATGA
GTATACTGCTGCTGTACTTCAAGTTTTTGAAGTATCATATTACTCTGCTG
TGCTTGTATTATAGTCTATATGCCCTTTCTTCGAAAACAGTAGTGTAGTT
ACTCGTACCTACTACTTCTGATGTTGTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGTAGTACAGGCAACAAGGTGCAGGCTGTCCTTCGCTAGAGCCACCC
AGTGCGGATGTATGATGGTGAAGTTGGGCCACGCGAGTGTCGTTGTCTCT
TGGCGCCGGTGTATGATGATATCTGCTTTGCTATTGCACGTAGAGCACAA
CAACCTGAGAGCCCGGGAGCATGATGACTGAACCATGACAAAAAAAACGG
ACATAGACGACGTTTGTGTTTCGTTGACTAAGGAGGTCTTGGGTATTTCT
CGTTGACATGCAGGACCCGCCCCTGGCAAGGGGCGGCCGCGCCGGGATTG
CCCTAGTTATTGCATGCACTTCAGAAGATAACAGGGTTTTAT
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Coding sequence (CDS) from alignment at D-herbacea_M_contig96:350023..350964+

>mRNA_D-herbacea_M_contig96.16046.1 ID=mRNA_D-herbacea_M_contig96.16046.1|Name=mRNA_D-herbacea_M_contig96.16046.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1008bp|location=Sequence derived from alignment at D-herbacea_M_contig96:350023..350964+ (Desmarestia herbacea DmunM male)
GCGAGCATTGGGTTCACCCTAACCCTCGAGCATAGGTCAAAAGCACAAGG
AGGGAACAAGAAGGGCAAGACGGGAGGAGCGATAGAGAACAATAAACGGT
ACGGGGCAAAAGGTGTGCTCCCCAAGCAACGACGATGGCGGGAAGGGAAA
CTCGCAGGTTCTGTGAAAATACGTAGACACCTCTTGTCAAGGTGCGCGGT
CAAGTCAGGCTCCTCGCGTACGCATGGCTCCGCTTTAGGTGGTAGCTCTT
CGCCAGATGGGCCGTCAACCTCTATTGGCGGAGCTGGCGTTGCCGAAAGC
ACACACAGCAGTACGAGCGTGGGCGAGAGTGCCCAGGCGAGCATTGGGTT
CACCCTAACCCTCGAGCATAGGTCAAAAGCACAAGGAGGGAACAAGAAGG
GCAAGACGGGAGGAGCGATAGAGAACAATAAACGGTACGGGGCAAAAGGT
GTGCTCCCCAAGCAACGACGATGGCGGGAAGGGAAACTCGCAGGTTCTGT
GAAAATACGTAGACACCTCTTGTCAAGGTGCGCGGTCAAGTCAGGCTCCT
CGCGTACGCATGGCTCCGCTTTAGGTGGTAGCTCTTCGCCAGATGGGCCG
TCAACCTCTATTGGCGGAGCTGGCGTTGCCGAAAGCACACACAGCAGTAC
GAGCGTGGGCGAGAGTGCCCAGGCAACAAGGTGCAGGCTGTCCTTCGCTA
GAGCCACCCAGTGCGGATGTATGATGGTGAAGTTGGGCCACGCGAGTGTC
GTTGTCTCTTGGCGCCGGTGTATGATGATATCTGCTTTGCTATTGCACGT
AGAGCACAACAACCTGAGAGCCCGGGAGCATGATGACTGAGCAACAAGGT
GCAGGCTGTCCTTCGCTAGAGCCACCCAGTGCGGATGTATGATGGTGAAG
TTGGGCCACGCGAGTGTCGTTGTCTCTTGGCGCCGGTGTATGATGATATC
TGCTTTGCTATTGCACGTAGAGCACAACAACCTGAGAGCCCGGGAGCATG
ATGACTGA
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