mRNA_D-herbacea_M_contig94.15979.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15979.1
Unique NamemRNA_D-herbacea_M_contig94.15979.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:1042793..1043280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935756.4177933-UTR-D-herbacea_M_contig94:1042792..10429771622935756.4177933-UTR-D-herbacea_M_contig94:1042792..1042977Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 1042793..1042977 +
1690880690.8155184-UTR-D-herbacea_M_contig94:1042792..10429771690880690.8155184-UTR-D-herbacea_M_contig94:1042792..1042977Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 1042793..1042977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935756.4319782-CDS-D-herbacea_M_contig94:1042977..10432801622935756.4319782-CDS-D-herbacea_M_contig94:1042977..1043280Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1042978..1043280 +
1690880690.8268847-CDS-D-herbacea_M_contig94:1042977..10432801690880690.8268847-CDS-D-herbacea_M_contig94:1042977..1043280Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 1042978..1043280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15979.1prot_D-herbacea_M_contig94.15979.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 1042978..1043280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15979.1

>prot_D-herbacea_M_contig94.15979.1 ID=prot_D-herbacea_M_contig94.15979.1|Name=mRNA_D-herbacea_M_contig94.15979.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=101bp
MRQCAGGRPGRLMGGGLLRRAPSPTVATVDTVARVCLDPSDLSFGMFCFV
LRDTDGAYATLAHLGLPKKSVILRSPVTRLTGALGGVVTIGSESGVTHRW
Y
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mRNA from alignment at D-herbacea_M_contig94:1042793..1043280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15979.1 ID=mRNA_D-herbacea_M_contig94.15979.1|Name=mRNA_D-herbacea_M_contig94.15979.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=488bp|location=Sequence derived from alignment at D-herbacea_M_contig94:1042793..1043280+ (Desmarestia herbacea DmunM male)
CTTCAACCAGCCCATCGCCGGAGTGGCGTGGCCGGCCTCCATGCAAGAGG
TTATTCAAGTTCGGCGCCATTTAATTCGGATCACCTTGTGGGCACGTTGT
GGATAGAGTGCGTAGCTGTTTGTTAATACGAGTGTCATTTGTGATCGTTT
GGTGCCAAAAATTTGTATTTTTGTTTTGTCCTTGCATGAGGCAGTGCGCG
GGCGGGCGGCCCGGGCGTTTGATGGGAGGGGGACTTTTACGGCGTGCACC
TTCACCCACCGTAGCTACGGTCGATACTGTCGCCCGGGTTTGCCTGGATC
CATCAGACTTATCCTTTGGCATGTTTTGTTTTGTTTTGAGAGACACTGAC
GGCGCCTACGCCACTCTCGCGCACTTAGGCCTCCCAAAAAAGTCTGTTAT
TTTACGGTCGCCAGTAACGCGCTTAACGGGGGCCTTGGGTGGGGTGGTGA
CGATCGGATCGGAATCGGGTGTAACCCACCGCTGGTAC
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:1042793..1043280+

>mRNA_D-herbacea_M_contig94.15979.1 ID=mRNA_D-herbacea_M_contig94.15979.1|Name=mRNA_D-herbacea_M_contig94.15979.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=606bp|location=Sequence derived from alignment at D-herbacea_M_contig94:1042793..1043280+ (Desmarestia herbacea DmunM male)
ATGAGGCAGTGCGCGGGCGGGCGGCCCGGGCGTTTGATGGGAGGGGGACT
TTTACGGCGTGCACCTTCACCCACCGTAGCTACGGTCGATACTGTCGCCC
GGGTTTGCCTGGATCCATCAGACTTATCCTTTGGCATGTTTTGTTTTGTT
TTGAGAGACACTGACGGCGCCTACGCCACTCTCGCGCACTTAGGCCTCCC
AAAAAAGTCTGTTATTTTACGGTCGCCAGTAACGCGCTTAACGGGGGCCT
TGGGTGGGGTGGTGACGATCGGATCGGAATCGGGTGTAACCCACCGCTGG
TACATGAGGCAGTGCGCGGGCGGGCGGCCCGGGCGTTTGATGGGAGGGGG
ACTTTTACGGCGTGCACCTTCACCCACCGTAGCTACGGTCGATACTGTCG
CCCGGGTTTGCCTGGATCCATCAGACTTATCCTTTGGCATGTTTTGTTTT
GTTTTGAGAGACACTGACGGCGCCTACGCCACTCTCGCGCACTTAGGCCT
CCCAAAAAAGTCTGTTATTTTACGGTCGCCAGTAACGCGCTTAACGGGGG
CCTTGGGTGGGGTGGTGACGATCGGATCGGAATCGGGTGTAACCCACCGC
TGGTAC
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