mRNA_D-herbacea_F_contig100.229.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.229.1
Unique NamemRNA_D-herbacea_F_contig100.229.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:527675..528139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.1827273-CDS-D-herbacea_F_contig100:527674..5280041622927411.1827273-CDS-D-herbacea_F_contig100:527674..528004Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 527675..528004 +
1690790155.911549-CDS-D-herbacea_F_contig100:527674..5280041690790155.911549-CDS-D-herbacea_F_contig100:527674..528004Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 527675..528004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.195641-UTR-D-herbacea_F_contig100:528004..5281391622927411.195641-UTR-D-herbacea_F_contig100:528004..528139Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 528005..528139 +
1690790155.922715-UTR-D-herbacea_F_contig100:528004..5281391690790155.922715-UTR-D-herbacea_F_contig100:528004..528139Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 528005..528139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.229.1prot_D-herbacea_F_contig100.229.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 527675..528004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.229.1

>prot_D-herbacea_F_contig100.229.1 ID=prot_D-herbacea_F_contig100.229.1|Name=mRNA_D-herbacea_F_contig100.229.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=110bp
TKTNSPDDRYKQKEAAHVVAISYADARKHRTLYKVTAKTKRNKKNASQFE
LSVRSIHTPHRTLPKKRCQNRRIHFDVSTPQAQPLPSIHTHKHTHKHPSP
HQKQTLGTA*
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mRNA from alignment at D-herbacea_F_contig100:527675..528139+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.229.1 ID=mRNA_D-herbacea_F_contig100.229.1|Name=mRNA_D-herbacea_F_contig100.229.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=465bp|location=Sequence derived from alignment at D-herbacea_F_contig100:527675..528139+ (Desmarestia herbacea DmunF female)
ACAAAAACAAACAGCCCCGACGACAGATATAAACAAAAGGAAGCAGCGCA
TGTTGTTGCCATTTCCTACGCCGACGCACGGAAACATCGCACTCTCTACA
AAGTAACAGCGAAAACAAAAAGAAACAAAAAAAACGCGAGCCAGTTTGAA
CTGTCTGTCCGTAGCATACACACACCACATCGCACCCTCCCCAAAAAAAG
GTGCCAAAACCGACGTATTCACTTCGATGTCTCAACACCTCAAGCACAGC
CGCTGCCCTCCATACACACACACAAACACACACACAAACACCCATCGCCC
CATCAAAAACAAACTCTCGGTACAGCATAGCCCACCCGACATCACGCCAA
AAAAATAGCGGCGCAATCGAAAAAACAAACAACACACGGACGGAGCACTC
TTAACAGCATAGTTTTTCTACGCTCTTTTCCTGCGTTCAACACAACCCGC
ACCGGGTATAACCAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:527675..528139+

>mRNA_D-herbacea_F_contig100.229.1 ID=mRNA_D-herbacea_F_contig100.229.1|Name=mRNA_D-herbacea_F_contig100.229.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=660bp|location=Sequence derived from alignment at D-herbacea_F_contig100:527675..528139+ (Desmarestia herbacea DmunF female)
ACAAAAACAAACAGCCCCGACGACAGATATAAACAAAAGGAAGCAGCGCA
TGTTGTTGCCATTTCCTACGCCGACGCACGGAAACATCGCACTCTCTACA
AAGTAACAGCGAAAACAAAAAGAAACAAAAAAAACGCGAGCCAGTTTGAA
CTGTCTGTCCGTAGCATACACACACCACATCGCACCCTCCCCAAAAAAAG
GTGCCAAAACCGACGTATTCACTTCGATGTCTCAACACCTCAAGCACAGC
CGCTGCCCTCCATACACACACACAAACACACACACAAACACCCATCGCCC
CATCAAAAACAAACTCTCGGTACAGCATAGACAAAAACAAACAGCCCCGA
CGACAGATATAAACAAAAGGAAGCAGCGCATGTTGTTGCCATTTCCTACG
CCGACGCACGGAAACATCGCACTCTCTACAAAGTAACAGCGAAAACAAAA
AGAAACAAAAAAAACGCGAGCCAGTTTGAACTGTCTGTCCGTAGCATACA
CACACCACATCGCACCCTCCCCAAAAAAAGGTGCCAAAACCGACGTATTC
ACTTCGATGTCTCAACACCTCAAGCACAGCCGCTGCCCTCCATACACACA
CACAAACACACACACAAACACCCATCGCCCCATCAAAAACAAACTCTCGG
TACAGCATAG
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