mRNA_D-herbacea_F_contig1.13.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.13.1
Unique NamemRNA_D-herbacea_F_contig1.13.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:596539..596976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.13.1prot_D-herbacea_F_contig1.13.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 596655..596975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.6266966-UTR-D-herbacea_F_contig1:596538..5966541622927383.6266966-UTR-D-herbacea_F_contig1:596538..596654Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 596539..596654 +
1690790135.7195723-UTR-D-herbacea_F_contig1:596538..5966541690790135.7195723-UTR-D-herbacea_F_contig1:596538..596654Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 596539..596654 +
1622927383.6462588-UTR-D-herbacea_F_contig1:596975..5969761622927383.6462588-UTR-D-herbacea_F_contig1:596975..596976Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 596976..596976 +
1690790135.7705817-UTR-D-herbacea_F_contig1:596975..5969761690790135.7705817-UTR-D-herbacea_F_contig1:596975..596976Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 596976..596976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.6356099-CDS-D-herbacea_F_contig1:596654..5969751622927383.6356099-CDS-D-herbacea_F_contig1:596654..596975Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 596655..596975 +
1690790135.7542386-CDS-D-herbacea_F_contig1:596654..5969751690790135.7542386-CDS-D-herbacea_F_contig1:596654..596975Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 596655..596975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.13.1

>prot_D-herbacea_F_contig1.13.1 ID=prot_D-herbacea_F_contig1.13.1|Name=mRNA_D-herbacea_F_contig1.13.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=107bp
MIALANSCMIWLLRIYSGSQKHHASLAMVLSRHAPSPISSDMAHEGYYCS
PRGGGLGGMYVCVLVSARSCCLSCCLSTPGGAGLCVCVMLRNVFLFCGEY
SHAVTH*
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mRNA from alignment at D-herbacea_F_contig1:596539..596976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.13.1 ID=mRNA_D-herbacea_F_contig1.13.1|Name=mRNA_D-herbacea_F_contig1.13.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=438bp|location=Sequence derived from alignment at D-herbacea_F_contig1:596539..596976+ (Desmarestia herbacea DmunF female)
AAGCTCCACACAAAAACGATGCCGATGCTGGCTTGGCTGCTATCACTGCT
GGTGGTGCTGCTGCTCGCCGCATACCATCACCCTCTGATGGCAGCAGTGC
GCCGTACCGATGATCTATGATAGCTCTTGCCAACAGCTGCATGATCTGGC
TGCTGCGTATATATTCGGGGTCCCAAAAGCATCATGCAAGCCTGGCGATG
GTTCTCAGTAGACACGCACCATCACCAATCTCGTCGGATATGGCCCACGA
AGGTTATTATTGTAGCCCGCGAGGAGGAGGATTAGGAGGTATGTATGTGT
GTGTGTTGGTGTCTGCCAGGAGCTGCTGCCTCAGCTGCTGTCTCAGCACG
CCAGGAGGAGCTGGGCTGTGTGTGTGTGTCATGTTGCGAAACGTTTTTTT
GTTTTGTGGAGAGTACAGTCATGCTGTGACACACTGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:596539..596976+

>mRNA_D-herbacea_F_contig1.13.1 ID=mRNA_D-herbacea_F_contig1.13.1|Name=mRNA_D-herbacea_F_contig1.13.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=642bp|location=Sequence derived from alignment at D-herbacea_F_contig1:596539..596976+ (Desmarestia herbacea DmunF female)
ATGATAGCTCTTGCCAACAGCTGCATGATCTGGCTGCTGCGTATATATTC
GGGGTCCCAAAAGCATCATGCAAGCCTGGCGATGGTTCTCAGTAGACACG
CACCATCACCAATCTCGTCGGATATGGCCCACGAAGGTTATTATTGTAGC
CCGCGAGGAGGAGGATTAGGAGGTATGTATGTGTGTGTGTTGGTGTCTGC
CAGGAGCTGCTGCCTCAGCTGCTGTCTCAGCACGCCAGGAGGAGCTGGGC
TGTGTGTGTGTGTCATGTTGCGAAACGTTTTTTTGTTTTGTGGAGAGTAC
AGTCATGCTGTGACACACTGAATGATAGCTCTTGCCAACAGCTGCATGAT
CTGGCTGCTGCGTATATATTCGGGGTCCCAAAAGCATCATGCAAGCCTGG
CGATGGTTCTCAGTAGACACGCACCATCACCAATCTCGTCGGATATGGCC
CACGAAGGTTATTATTGTAGCCCGCGAGGAGGAGGATTAGGAGGTATGTA
TGTGTGTGTGTTGGTGTCTGCCAGGAGCTGCTGCCTCAGCTGCTGTCTCA
GCACGCCAGGAGGAGCTGGGCTGTGTGTGTGTGTCATGTTGCGAAACGTT
TTTTTGTTTTGTGGAGAGTACAGTCATGCTGTGACACACTGA
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