mRNA_D-herbacea_F_contig1190.1352.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1190.1352.1
Unique NamemRNA_D-herbacea_F_contig1190.1352.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 410 bits (1054), Expect = 2.880e-125
Identity = 219/448 (48.88%), Postives = 299/448 (66.74%), Query Frame = 1
Query:   10 GPSGLRYSHLQAALCDELVEDLAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGD---GAAAAGLPTPAEA------------LRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNL 1308
            GPSGLR+S LQ++L  EL E +A   +++F    LP  FW LHTSANLSA+G K RP+A GD+ RR++G V CR+YG  LA++F+P GQYGVAV GG E++A  A L  ++G  +L+YD  NAFNS+ R   LPALA+++P ++PYA+N+YAREPPKLL+  DSG + V+ SA GVQQGCNLGPLCYSAG LK+L++FRANPPV GA+ ++FIDD+ V+LP   + + AA   VT W+Q  +   G++LNR KS+ L   G   +   E+ R  ++ T L V   GMR+VGVPVG   + +    +   GEP +L++ +A ++DAQAS QILR SA +RL+ LLR++PP +T +AA+ +D  VE  L +I+ G    G  A   PT   +            +RQA LP+REGGLG+ S+  I G A+IG  ALVL R + A+   NL
Sbjct: 1177 GPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGMA-VIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARALVATNATNL 1623          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 1.280e-124
Identity = 215/444 (48.42%), Postives = 281/444 (63.29%), Query Frame = 1
Query:    1 SAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGR 1278
            SA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FC +Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPGA+ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  +GI L+  KS+ L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT  E                A  Q HLPIREGGLG+TSS  I+ +A++   ALV  +
Sbjct:  136 SAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSK 579          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 3.720e-123
Identity = 216/462 (46.75%), Postives = 290/462 (62.77%), Query Frame = 1
Query:    1 SAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERL 1329
            SA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL
Sbjct:  136 SAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRL 597          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 2.310e-121
Identity = 216/462 (46.75%), Postives = 290/462 (62.77%), Query Frame = 1
Query:    1 SAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERL 1329
            SA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL
Sbjct:  136 SAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRL 597          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 9.350e-120
Identity = 206/444 (46.40%), Postives = 273/444 (61.49%), Query Frame = 1
Query:   49 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERL 1329
            + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +  Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPGA+ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  +GI L+  KS  L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+  L+ ++D Q S+Q+LR+S   RL HLLRT+ PSIT  AA  +D+L+ WA++ I+ G  A   G+PT  E                A  Q HLPIREGGLG+TSS  I+ +A++   ALV  + V AS    +   L +L
Sbjct:    1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQL 444          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 7.390e-113
Identity = 203/445 (45.62%), Postives = 276/445 (62.02%), Query Frame = 1
Query:   49 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERL 1329
            + D   E LA F+  VF     LP   W LHTSANLSALG+K RP+A G VLRR+I   F R+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A + P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL
Sbjct:    1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRL 445          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.540e-75
Identity = 134/262 (51.15%), Postives = 172/262 (65.65%), Query Frame = 1
Query:    1 SAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQAL 780
            SA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L
Sbjct:  136 SAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 9.800e-70
Identity = 127/279 (45.52%), Postives = 173/279 (62.01%), Query Frame = 1
Query:  493 LDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRV 1281
            ++ G  E+V S RGVQQGCNLG   +S G L  +KEF   PPVPGA+ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  +GI L+  KS+ L  +G     LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT  E                A  Q HLPIREGGLG+TSS  I+ +A++   ALV  ++
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALVFSKI 279          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 4.560e-56
Identity = 109/263 (41.44%), Postives = 159/263 (60.46%), Query Frame = 1
Query:  592 LKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE-----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERL 1329
            +KEF   PPVPG + + ++DD+   LPP ++ ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+P GTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G  A +  +PT  E                 A  Q HLP+REGGLG+TS+  I+ +A++   ALV  + V AS    +   L RL
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRL 263          
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.390e-53
Identity = 112/262 (42.75%), Postives = 155/262 (59.16%), Query Frame = 1
Query:  592 LKEFRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAE----------------ALRQAHLPIREGGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERL 1329
            +KEF   PPVPGA+ + ++DD+ V LPP ++ +I AI  VT W+Q+ L  + I L+  KS+ L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT  PSIT  AA  +D L+ WA++ I+ G  A   G+PT  E                A  Q HLPIREGGL +T S  I+ +A++   ALV  + V AS    +   L +L
Sbjct:    1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAFVAGQALVFSKSVQASTGLTIEQCLPQL 262          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1190.1352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN2.880e-12548.88Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KGJ4_9PHAE1.280e-12448.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE3.720e-12346.75Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE2.310e-12146.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE9.350e-12046.40Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE7.390e-11345.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE1.540e-7551.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K541_9PHAE9.800e-7045.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLD7_9PHAE4.560e-5641.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL76_9PHAE1.390e-5342.75Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1190contigD-herbacea_F_contig1190:813..2195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue4e-22
Seed eggNOG ortholog400682.PAC_15702057
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1332
Cds size1332
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927581.650808-CDS-D-herbacea_F_contig1190:812..9771622927581.650808-CDS-D-herbacea_F_contig1190:812..977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1190 813..977 -
1690790243.5227807-CDS-D-herbacea_F_contig1190:812..9771690790243.5227807-CDS-D-herbacea_F_contig1190:812..977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1190 813..977 -
1622927581.6653373-CDS-D-herbacea_F_contig1190:1028..21951622927581.6653373-CDS-D-herbacea_F_contig1190:1028..2195Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1190 1029..2195 -
1690790243.5314941-CDS-D-herbacea_F_contig1190:1028..21951690790243.5314941-CDS-D-herbacea_F_contig1190:1028..2195Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1190 1029..2195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1190.1352.1prot_D-herbacea_F_contig1190.1352.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1190 813..2195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1190.1352.1

>prot_D-herbacea_F_contig1190.1352.1 ID=prot_D-herbacea_F_contig1190.1352.1|Name=mRNA_D-herbacea_F_contig1190.1352.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=444bp
SAAGPSGLRYSHLQAALCDELVEDLAAFATLVFSSRVLPQVFWTLHTSAN
LSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGG
VEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYA
SNLYAREPPKLLFALDSGGSEVVESARGVQQGCNLGPLCYSAGSLKILKE
FRANPPVPGARAVSFIDDITVILPPEISLDIAAIGKVTEWLQERLGIEGI
SLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTE
QFQRDFLQEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTV
PPSITGQAAASYDALVEWALASIIAGDGAAAAGLPTPAEALRQAHLPIRE
GGLGLTSSSSIKGAAYIGCHALVLGRVVAASARGNLPSLLERLP
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mRNA from alignment at D-herbacea_F_contig1190:813..2195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1190.1352.1 ID=mRNA_D-herbacea_F_contig1190.1352.1|Name=mRNA_D-herbacea_F_contig1190.1352.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1383bp|location=Sequence derived from alignment at D-herbacea_F_contig1190:813..2195- (Desmarestia herbacea DmunF female)
AGCGCGGCAGGTCCGTCTGGACTACGCTACAGCCATCTGCAGGCCGCGCT GTGCGATGAACTGGTCGAGGACCTCGCGGCGTTCGCGACGCTTGTTTTTT CCAGCCGTGTTTTGCCCCAAGTGTTCTGGACACTGCACACGAGCGCTAAC CTTTCCGCGTTGGGGCAGAAGGCGAGACCAGTGGCGTGCGGCGATGTCTT GCGGAGAGTTATTGGCGCTGTTTTCTGCCGCCGATACGGCAGGAAACTGG CGGACTACTTCCAGCCCTGGGGCCAGTACGGCGTAGCAGTTTCAGGCGGA GTAGAGATAATGGCCCTCACAGCGACACTGGGTTTCGAAGAGGGTTGCAC CATTCTCTCATACGACGGAGCAAACGCCTTTAACAGCATATACCGCCACA GGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCTCAGTGGTCCCCTACGCA TCAAACCTGTACGCACGGGAACCCCCAAAACTTTTGTTTGCACTAGACAG TGGAGGTTCCGAAGTGGTTGAGTCAGCTCGGGGAGTACAACAAGGATGTA ATCTAGGTCCACTTTGCTACAGCGCAGGCTCACTGAAGATCCTAAAAGAA TTCAGAGCCAATCCACCGGTGCCAGGAGCGAGAGCGGTCTCGTTCATCGA CGACATCACCGTTATTCTACCACCGGAAATTTCTCTCGATATTGCGGCTA TAGGAAAAGTTACTGAATGGCTGCAGGAACGCCTGGGGATAGAAGGTATC TCGCTGAACCGAAGGAAATCACAGGCCCTGCTAGCAGATGGAGTGGGGCC AGAACAACTGACGGAAGAGCAGCGAGTTGCAATGGATACTACAGGGCTTA CGGTGGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGTCGGAACAGAA CAGTTCCAGCGCGATTTCTTACAGGAGGCGGTTAATGGAGAGCCAGCTGA GCTCGTGAGGGCGCTGGCCCCAATGGAGGATGCCCAAGCGAGCTTTCAGA TTTTGCGTCTATCTGCCACCTCTCGCCTCTCGCACCTGCTCCGAACAGTC CCGCCCTCCATAACAGGCCAAGCTGCAGCAAGCTATGACGCTTTGGTGGA GTGGGCGTTGGCGTCTATCATAGCCGGCGACGGAGCTGCCGCGGCAGGGC TACCAACGCCAGCGGAAGTAGCCCACGACCCCACGGTGTGCCAAAATCAG ACCTACCTGGGACACGAGGCCCTACGGCAGGCCCACCTGCCAATTCGAGA AGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATCAAAGGCGCAGCATATA TCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGTCGCTGCCTCCGCCCGG GGGAACCTTCCATCCCTTCTTGAACGGCTGCCT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1190:813..2195-

>mRNA_D-herbacea_F_contig1190.1352.1 ID=mRNA_D-herbacea_F_contig1190.1352.1|Name=mRNA_D-herbacea_F_contig1190.1352.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2664bp|location=Sequence derived from alignment at D-herbacea_F_contig1190:813..2195- (Desmarestia herbacea DmunF female)
AGCGCGGCAGGTCCGTCTGGACTACGCTACAGCCATCTGCAGGCCGCGCT
GTGCGATGAACTGGTCGAGGACCTCGCGGCGTTCGCGACGCTTGTTTTTT
CCAGCCGTGTTTTGCCCCAAGTGTTCTGGACACTGCACACGAGCGCTAAC
CTTTCCGCGTTGGGGCAGAAGGCGAGACCAGTGGCGTGCGGCGATGTCTT
GCGGAGAGTTATTGGCGCTGTTTTCTGCCGCCGATACGGCAGGAAACTGG
CGGACTACTTCCAGCCCTGGGGCCAGTACGGCGTAGCAGTTTCAGGCGGA
GTAGAGATAATGGCCCTCACAGCGACACTGGGTTTCGAAGAGGGTTGCAC
CATTCTCTCATACGACGGAGCAAACGCCTTTAACAGCATATACCGCCACA
GGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCTCAGTGGTCCCCTACGCA
TCAAACCTGTACGCACGGGAACCCCCAAAACTTTTGTTTGCACTAGACAG
TGGAGGTTCCGAAGTGGTTGAGTCAGCTCGGGGAGTACAACAAGGATGTA
ATCTAGGTCCACTTTGCTACAGCGCAGGCTCACTGAAGATCCTAAAAGAA
TTCAGAGCCAATCCACCGGTGCCAGGAGCGAGAGCGGTCTCGTTCATCGA
CGACATCACCGTTATTCTACCACCGGAAATTTCTCTCGATATTGCGGCTA
TAGGAAAAGTTACTGAATGGCTGCAGGAACGCCTGGGGATAGAAGGTATC
TCGCTGAACCGAAGGAAATCACAGGCCCTGCTAGCAGATGGAGTGGGGCC
AGAACAACTGACGGAAGAGCAGCGAGTTGCAATGGATACTACAGGGCTTA
CGGTGGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGTCGGAACAGAA
CAGTTCCAGCGCGATTTCTTACAGGAGGCGGTTAATGGAGAGCCAGCTGA
GCTCGTGAGGGCGCTGGCCCCAATGGAGGATGCCCAAGCGAGCTTTCAGA
TTTTGCGTCTATCTGCCACCTCTCGCCTCTCGCACCTGCTCCGAACAGTC
CCGCCCTCCATAACAGGCCAAGCTGCAGCAAGCTATGACGCTTTGGTGGA
GTGGGCGTTGGCGTCTATCATAGCCGGCGACGGAGCTGCCGCGGCAGGGC
TACCAACGCCAGCGGAAAGCGCGGCAGGTCCGTCTGGACTACGCTACAGC
CATCTGCAGGCCGCGCTGTGCGATGAACTGGTCGAGGACCTCGCGGCGTT
CGCGACGCTTGTTTTTTCCAGCCGTGTTTTGCCCCAAGTGTTCTGGACAC
TGCACACGAGCGCTAACCTTTCCGCGTTGGGGCAGAAGGCGAGACCAGTG
GCGTGCGGCGATGTCTTGCGGAGAGTTATTGGCGCTGTTTTCTGCCGCCG
ATACGGCAGGAAACTGGCGGACTACTTCCAGCCCTGGGGCCAGTACGGCG
TAGCAGTTTCAGGCGGAGTAGAGATAATGGCCCTCACAGCGACACTGGGT
TTCGAAGAGGGTTGCACCATTCTCTCATACGACGGAGCAAACGCCTTTAA
CAGCATATACCGCCACAGGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCT
CAGTGGTCCCCTACGCATCAAACCTGTACGCACGGGAACCCCCAAAACTT
TTGTTTGCACTAGACAGTGGAGGTTCCGAAGTGGTTGAGTCAGCTCGGGG
AGTACAACAAGGATGTAATCTAGGTCCACTTTGCTACAGCGCAGGCTCAC
TGAAGATCCTAAAAGAATTCAGAGCCAATCCACCGGTGCCAGGAGCGAGA
GCGGTCTCGTTCATCGACGACATCACCGTTATTCTACCACCGGAAATTTC
TCTCGATATTGCGGCTATAGGAAAAGTTACTGAATGGCTGCAGGAACGCC
TGGGGATAGAAGGTATCTCGCTGAACCGAAGGAAATCACAGGCCCTGCTA
GCAGATGGAGTGGGGCCAGAACAACTGACGGAAGAGCAGCGAGTTGCAAT
GGATACTACAGGGCTTACGGTGGTCCGACAGGGGATGAGGGTTGTGGGAG
TACCAGTCGGAACAGAACAGTTCCAGCGCGATTTCTTACAGGAGGCGGTT
AATGGAGAGCCAGCTGAGCTCGTGAGGGCGCTGGCCCCAATGGAGGATGC
CCAAGCGAGCTTTCAGATTTTGCGTCTATCTGCCACCTCTCGCCTCTCGC
ACCTGCTCCGAACAGTCCCGCCCTCCATAACAGGCCAAGCTGCAGCAAGC
TATGACGCTTTGGTGGAGTGGGCGTTGGCGTCTATCATAGCCGGCGACGG
AGCTGCCGCGGCAGGGCTACCAACGCCAGCGGAAGCCCTACGGCAGGCCC
ACCTGCCAATTCGAGAAGGCGGCCTTGGGCTCACCAGCAGTAGCTCCATC
AAAGGCGCAGCATATATCGGATGTCACGCCCTGGTCCTGGGGCGGGTCGT
CGCTGCCTCCGCCCGGGGGAACCTTCCATCCCTTCTTGAACGGCTGCCTG
CCCTACGGCAGGCCCACCTGCCAATTCGAGAAGGCGGCCTTGGGCTCACC
AGCAGTAGCTCCATCAAAGGCGCAGCATATATCGGATGTCACGCCCTGGT
CCTGGGGCGGGTCGTCGCTGCCTCCGCCCGGGGGAACCTTCCATCCCTTC
TTGAACGGCTGCCT
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