mRNA_D-herbacea_F_contig119.1333.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig119.1333.1
Unique NamemRNA_D-herbacea_F_contig119.1333.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig119.1333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig119contigD-herbacea_F_contig119:545314..551281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1730
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.9060235-UTR-D-herbacea_F_contig119:545313..5453601622927574.9060235-UTR-D-herbacea_F_contig119:545313..545360Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 545314..545360 +
1690790240.585734-UTR-D-herbacea_F_contig119:545313..5453601690790240.585734-UTR-D-herbacea_F_contig119:545313..545360Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 545314..545360 +
1622927575.001451-UTR-D-herbacea_F_contig119:550591..5512811622927575.001451-UTR-D-herbacea_F_contig119:550591..551281Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 550592..551281 +
1690790240.6337373-UTR-D-herbacea_F_contig119:550591..5512811690790240.6337373-UTR-D-herbacea_F_contig119:550591..551281Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig119 550592..551281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.9207416-CDS-D-herbacea_F_contig119:545360..5454891622927574.9207416-CDS-D-herbacea_F_contig119:545360..545489Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 545361..545489 +
1690790240.5943406-CDS-D-herbacea_F_contig119:545360..5454891690790240.5943406-CDS-D-herbacea_F_contig119:545360..545489Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 545361..545489 +
1622927574.9336772-CDS-D-herbacea_F_contig119:546860..5469771622927574.9336772-CDS-D-herbacea_F_contig119:546860..546977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 546861..546977 +
1690790240.6025538-CDS-D-herbacea_F_contig119:546860..5469771690790240.6025538-CDS-D-herbacea_F_contig119:546860..546977Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 546861..546977 +
1622927574.9476092-CDS-D-herbacea_F_contig119:547437..5475571622927574.9476092-CDS-D-herbacea_F_contig119:547437..547557Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 547438..547557 +
1690790240.610379-CDS-D-herbacea_F_contig119:547437..5475571690790240.610379-CDS-D-herbacea_F_contig119:547437..547557Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 547438..547557 +
1622927574.9751492-CDS-D-herbacea_F_contig119:548966..5490881622927574.9751492-CDS-D-herbacea_F_contig119:548966..549088Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 548967..549088 +
1690790240.6184177-CDS-D-herbacea_F_contig119:548966..5490881690790240.6184177-CDS-D-herbacea_F_contig119:548966..549088Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 548967..549088 +
1622927574.9901938-CDS-D-herbacea_F_contig119:550086..5505911622927574.9901938-CDS-D-herbacea_F_contig119:550086..550591Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 550087..550591 +
1690790240.6261213-CDS-D-herbacea_F_contig119:550086..5505911690790240.6261213-CDS-D-herbacea_F_contig119:550086..550591Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig119 550087..550591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig119.1333.1prot_D-herbacea_F_contig119.1333.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig119 545361..550591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig119.1333.1

>prot_D-herbacea_F_contig119.1333.1 ID=prot_D-herbacea_F_contig119.1333.1|Name=mRNA_D-herbacea_F_contig119.1333.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=331bp
MGLAPSRPNHENTFYSRERLAQLTEALERASPNQKINVQLVSQMSPGDVV
GDTSKGPTVFLYDVRRPPHVDTSSLNDGTEEPDLSGMDAGRRRVRSSSPS
HREHRSSSPSSRRSRTGSLDRNVVEIQANRFERGKLARRLLGAIMLFVLV
GVVLFGSYFEVSRWSAVVNNNNEHAPPVLSTVTTAPTNAAAASEGDDNPS
PRWMSSISSIFSRGKTVVVADSAIKDASLGDVAVGKEGVHSTGGSAGKTD
RKQKLANSSSSADDKKAGRATGGGGAGAGAVTSGRKARKGMLLRHVRRGT
TQWLKKARHAVGSWRALHKEDGEAFLSGDK*
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mRNA from alignment at D-herbacea_F_contig119:545314..551281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig119.1333.1 ID=mRNA_D-herbacea_F_contig119.1333.1|Name=mRNA_D-herbacea_F_contig119.1333.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5968bp|location=Sequence derived from alignment at D-herbacea_F_contig119:545314..551281+ (Desmarestia herbacea DmunF female)
AGGCGACCGAGGAAATCGCCCAGAACAGGCATACGACCACCGGGGCGATG GGTCTCGCCCCAAGCCGCCCCAACCACGAGAATACATTTTACTCTCGGGA GCGCCTCGCTCAACTGACCGAAGCCCTTGAGCGTGCTAGCCCTAACCAGA AGATCAATGTGCAGCTTGTTTCCCAGGTATTTTACTCGTACCTATACAAC AAGATAAGAGTGAGTGGTGTTTGCGCGTGGTTCGTTTGGTAAACGCTATT TTTGTCATCATGTTCTTGTTATCGGGTCCACCGTAGAAGAAGTGCATCAT GTCCATGGGAACGGGCTTAGTGCGAGAAACAACAACAACAACAGCAGCCC ATTGTGTTCATCATTTATTATTGGTAGCTCCGTTGTTGTTGTTGTTGTTG TCGTGTGATTGAAGCCTTTCTTATACATACTTCGTATATATATGCTGTCG CTTGCTGTTGTATGGGAAGGTTTTAATGAATTTTTCTGTTGGAGGGATTC GCGAACCTCAGTCGGTTTAAGCTTCTTCTTTTTTTTCGTTTTCGAGGGGT GCATCGTCCTGGGAGTTTGTATGTATGCTCAACCGTGTTAACAATATAAG ATACAAAGATAGCACCTACGACTATAATAATAGCGCGGCACCAAGGTTAG ATATAAAAGCAATGCCCCGACAGTATACTTGCCAACCTACATAATAAACT GTCACAGGTCCAATGGTCTAGTGATTAGGGTGTTCGCCTCTGTTGGCGGA AGTTGGGGGTTCGATCCCCGGTGGCACTTTTCTGTGCCATCTTCCGTCGC GGAAAACACGAGAGCGTGAGTAAGCACAATTCGATGAAAGTCGACGAGGG AAGAAAGTGCTGCACTCTTCTCGCGACAAAAAATGTAGACACGTACCGTA GTGGGAAGGCGGGAGGAGCGCCTGCTATGTGACCCCGGATCTGAGATACG AAGAGAGATGGAGCTAGAGAAATAATCGGGCGAAGATAATAAATGGGAAA AAAAAAAAAAAAAAAAAAGGTCGTCGCCGATCTTTCCGGTTTTTTAATTG TACCTTGGATGATTGTGACCACATAAAAATATAAATACGTATACTGTAGA TAAGAAGTAAAACAGTTTGTTTGTTTGTTCTTGTTTTTTTTTGTTTTTTT TTGCGCTTTGTACTCAATCAAGTAGTCATTGCATATTTGATTTTGTTTTC GATGTTGTAGTGTTCTAAATTGGATGTAGTAACTGGATTGTTGAAGCCCT GTGAACCAATTCTCAGATAGATGTAGTTATAATGCGGCAATATGTGCTGC ACATTGTAGGATGGCAATATAATAATAATAAAGTAGTCATAGTATCACTT CTTCCTGCACCCACTTATTACCTCGCCAGAATGAAAAAATCCCCTCTTTT TTTCGATAAGTTACCCGCAAAGGCCTAGTGTTCCCGCAGCTCCAAACTTG TAGCGTGCGGTGCCACGACGTCGTGCATTAAAAAAGCCTTAAAAGTGTGT TGAAACGTCCGTTATTGTATTCCTGGTGTTGTTCGGTTTACTGGCAGATG TCTCCAGGCGACGTTGTTGGCGACACCAGCAAGGGACCGACTGTCTTCCT GTACGACGTTCGCCGCCCGCCCCATGTTGACACGAGCTCGCTGAATGACG GAACGGAAGAACCGGTGCGCATTGTATTTCACGGCCTGAACAATACTCTG TACAAGATAGATAGTTGAGAGAGCTAGACGCGAAATTTTTTCTTCTTATC GGACAGCGATGAAGTCTATACTCGTACAGTACGGTGGTCTCTGCCATGCG AGCCAACGTCCGAAAGAGTACGGTGTCCTAAGTGTTGTATCATAGGTGCT CGCTTGAGTACTCCAGGCTGTACCTTCAAATAAAGGTACAGGTAGCTACT TACTACTTCGCTGAGTCTATTGACAAAACCATCATCATTACGATACTATA ACCCAACACCGGTGTCTGCTACAAAAACAACAATCATATACTGCTATGCG TCACGTATCAAAGAGTACCGTCAGGTAAACATTGCTTTTTGCACAGTGCT TTATTCGATTCAGCAGGCCAATAACCCCCCCCGCGCGCGCGCATGTCCAC CTCCTGACCCCACGACTTTGGCAGGATCTGTCTGGCATGGACGCAGGCAG GCGCCGCGTAAGGTCATCAAGCCCGAGCCACCGAGAACATCGATCGTCGT CACCGTCGTCTCGTCGATCAAGAACAGGGTCTCTGGACCGTAACGTAAGT TATTTTTAGTTAGCTTTTTAACGCAAGTTTTACAAATGGTGAGGCTTTTC GTAGATAACAATGGTACTACCATTTTCTATCATTCTTCGAGTACGTATTC CGACAGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCAC ATTAAAAAAGTCGTTCATTCTACCCTACGTCATCCAGTAGCGTACTCAGA GTCTGCACTGGAACTTCCATCCTAGAGAGACACGAAATTCCGTGGTCACA GGCTGCATACAAGAGCTACATAACAATAGCAAAAAATCGCAAATTGAACA ACCAAAAGAATGGAAAATAAATAGAGTACAGTAGACTAGGGAATGGAGAT AATAAATAAGTAATAATTGAGAGATGGAGAGGACAGACATCATCAAACAA ATCGCAAAAAACCTTTATAAAAAAGAAGAAACAATTAAAATAAACAGAAA GAACAACAGCAAGAAAAAAGACGGGGAGGAACAATAAAGAAGTGAGCTAA AATGCCACAGGACAAACGGAGGCAAAACGAAAAAGGAAGGAAGAGCTGAA TGTCAACGATACTTGGGGCTACGGGAGGGAGATACGGGGACTGTTAGTCA CACTGAAACATTTCTACCCGGTTTGCCATCTCCTCCTTACTCTCATCGGA GGCAGTAACGATATTACTGCTGCTACCCCCCCCCCCGATCCCCATCTTGC TACTTCGGGCTTCCCCGGCCCTCTTCACGTGACGTGCACTACTCTTCGCC GCTTCCTCTTTATGCCACGTCTACATGAAGGTTTCTGCTCCTTCCATGAC CCCCCTGTACCACCTTCCCCACTCGACGGCCGCTCTTGTCCACATCACAG TTTCAACTCCAAACACCAGCGACGGTAGAAGGGTAAAGAACGCCTTTAAA AAAAAGCGAAAGATAGCACGACTCTTCAACAAAACAGAGAGAACCTTAAA AACAAAATGTGGAAACTTGAGAGGTTAAAGCTGTAATTTTTTTGTACATT TTTTAGCCATCCGCCGAAGGATAACAATGGTTAAAAACAATGGTTGATGA CAACAATAGTTATTGAAAACAATGGTTGATGACAACAATAGTTATTGAAA ACAATTGTTGAAAAAAAATATGGTTTCCTGCATATGCCCGAAGCACGCCA CTGTGGCGTCGGCGAAGGGACAGATTTTAGACCCCAGTACCCCCCCCCCC ATTAGAGGGGTGCCTTTTTTTCTTATTCCTACCGCATCCCGTCAACCAAT TGAAGCGCATTCCGGATGGCGGGTGTTCAGTGTGAATGAACAGTTGTAGC GTGCGCGTGTATTGTCCCGGGTCCTCTACGTCATGCATACATCCACCGTT GTCACCGTTCTTTCACGGCTATTTGCCCGGTGAAACGTGCAATCGGGGTA CAGGTGGTGGAAATACAGGCCAACCGTTTCGAGAGGGGGAAACTTGCCCG GCGTCTGCTGGGTGCGATAATGCTTTTCGTGCTCGTGGGCGTTGTACTCT TTGGAAGCTACTTCGAAGTTTCCAGGTAAGGGAAAACACACTTGTTGTGT GATACGAGTAGGTTGCGTGTGTTGCCAGAGGGGTGAAGCACATGCCTCGC ACTTTGTTCAGTATGGTACTCGTCCTAGTGGGCCTTTTTATCGAATCCAA TACATACACGATAAAGAAAATAAACACGACTTCTTCCTCTGTTACGGGCG TTTATTTGTGTTGGGTGCAAGGTGTTGACGATGACCTTATAGTTGGGTCC TATAGAAACATAAAGCGCAGACGAAGCTGACGCATAAAAAAAAAAGAGAG CTCGTTTTCAATATCAAAATCAGGTCAGAATGTACTCCATTTTAGCTTTT TTGAGAATATTTTCGACAACTTTTTTATAATGTTTTTGAGAAGTACAATC AAACACATCGTAAAATGGGCGATAACAACTTTAGTGTGGAGCATACAGGG GTGAGGGCGCGGCAGAAGGCGGGGACGTTGGAAAGGGTGGTCAAATACGA TGAAGATGCCTTTTAACGGGCTTGGGACTTCCTGGCTGATGCTAAGGACG ATCAATAACTTTTTTGTTTTTGTTTTTTTTTCTCCGACACTTTTTTTGCC CCTGGGAAAGGGGCGAAATACGGACTGATTTTTTTGCGGCGGTTCGGCCG CATGGTTCGAGCACGAGCTGCAAAAACAAGATATGGTTCTAACTAAAAAA ATAGCCAAGAAAATTCGAAAAAACATCGGAAAACAGATTAGACACGGGTA AGGGCTCGAACAAAAACATAACCTACCGGACTTTGGGACAGAGGAATAAG TACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT TATTATTATTATTATTATTATTGTAACGAAACCATTTCTAGCTAATCCCG AACGCAACCAACTTGCTTCCCAGGTGGTCCGCCGTGGTCAACAACAACAA CGAGCACGCTCCCCCCGTGCTATCGACGGTAACTACTGCCCCAACCAATG CGGCGGCGGCGTCTGAGGGCGACGACAATCCCTCGCCGCGGTGGATGTCC TCCATATCCTCCATCTTCTCACGCGGCAAGACTGTGGTTGTTGCTGATTC CGCAATCAAAGATGCCTCTTTAGGGGACGTGGCGGTGGGGAAAGAGGGGG TCCACTCGACGGGAGGAAGTGCTGGCAAGACCGACCGCAAACAAAAATTA GCGAACAGCAGTAGTAGTGCCGATGATAAGAAGGCTGGGCGAGCGACGGG GGGGGGCGGTGCTGGTGCTGGTGCTGTAACCTCGGGCCGCAAAGCAAGAA AAGGAATGCTACTCAGGCACGTTCGGAGGGGCACGACGCAATGGCTCAAG AAGGCACGGCACGCCGTGGGATCGTGGCGGGCACTTCACAAAGAGGATGG CGAGGCGTTTTTGTCGGGGGATAAGTAGGCTAACTATTATCAGATGGTTA GGTGTGTGGTATATGGTCGTGGCGGGGCTGCTATGTGTTCCGTGTGCCTA GAGGATTCGGCGTGTGCGTGCATTTCTTCGTCGCAGTGATTGAACGCGAA GAGGGGGGGTGCAGGAGACGCTACACGTATCATAGTTCTTTGACTCTCCA GCTTGTGGCTGTACGGCGGGTATTTTACCATAATCTTGTGTTACCGTAAA TCGCTGTGGATACCTGATGTACGTTAGTTATATGTAAGAGTAGCAAGTGT ATAATGCTTCCTCGCTTGTTTCGTATTGTGTTATATTAATAGTCACTTTG CACGATGTTTGTGGCAGAGGGAAGTAGAAATGATGGCACGCTAAAGGTAA CATTGTGTGAATATTGCAGTTTGCTACATCGCGCGTAAGCATCGTCTCGT AGTAGTAAATCTACGCTTCGAAGTACGATGTTGGAGTCATCAGCGTGCAG TTGGACAACAAGTGGCTGTCTGCTGCAATAAATATCGTGGCGGTGTGGCG TCTTATTTTGGCGGGCGGATACTACACACACTGTCGTCGTCGTTCGACAC TGTTTACGAAAATATTTGCATCATCAGGGATCAAGATCTTGAGTACATCA CGCCTGTTGTCTCGTCGCGTGTCATTTTTCGCTTTGTCGCATAATATAAT GCTCGAAGTGTGTCCCCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig119:545314..551281+

>mRNA_D-herbacea_F_contig119.1333.1 ID=mRNA_D-herbacea_F_contig119.1333.1|Name=mRNA_D-herbacea_F_contig119.1333.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1986bp|location=Sequence derived from alignment at D-herbacea_F_contig119:545314..551281+ (Desmarestia herbacea DmunF female)
ATGGGTCTCGCCCCAAGCCGCCCCAACCACGAGAATACATTTTACTCTCG
GGAGCGCCTCGCTCAACTGACCGAAGCCCTTGAGCGTGCTAGCCCTAACC
AGAAGATCAATGTGCAGCTTGTTTCCCAGATGGGTCTCGCCCCAAGCCGC
CCCAACCACGAGAATACATTTTACTCTCGGGAGCGCCTCGCTCAACTGAC
CGAAGCCCTTGAGCGTGCTAGCCCTAACCAGAAGATCAATGTGCAGCTTG
TTTCCCAGATGTCTCCAGGCGACGTTGTTGGCGACACCAGCAAGGGACCG
ACTGTCTTCCTGTACGACGTTCGCCGCCCGCCCCATGTTGACACGAGCTC
GCTGAATGACGGAACGGAAGAACCGATGTCTCCAGGCGACGTTGTTGGCG
ACACCAGCAAGGGACCGACTGTCTTCCTGTACGACGTTCGCCGCCCGCCC
CATGTTGACACGAGCTCGCTGAATGACGGAACGGAAGAACCGGATCTGTC
TGGCATGGACGCAGGCAGGCGCCGCGTAAGGTCATCAAGCCCGAGCCACC
GAGAACATCGATCGTCGTCACCGTCGTCTCGTCGATCAAGAACAGGGTCT
CTGGACCGTAACGATCTGTCTGGCATGGACGCAGGCAGGCGCCGCGTAAG
GTCATCAAGCCCGAGCCACCGAGAACATCGATCGTCGTCACCGTCGTCTC
GTCGATCAAGAACAGGGTCTCTGGACCGTAACGTGGTGGAAATACAGGCC
AACCGTTTCGAGAGGGGGAAACTTGCCCGGCGTCTGCTGGGTGCGATAAT
GCTTTTCGTGCTCGTGGGCGTTGTACTCTTTGGAAGCTACTTCGAAGTTT
CCAGGTGGTGGAAATACAGGCCAACCGTTTCGAGAGGGGGAAACTTGCCC
GGCGTCTGCTGGGTGCGATAATGCTTTTCGTGCTCGTGGGCGTTGTACTC
TTTGGAAGCTACTTCGAAGTTTCCAGGTGGTCCGCCGTGGTCAACAACAA
CAACGAGCACGCTCCCCCCGTGCTATCGACGGTAACTACTGCCCCAACCA
ATGCGGCGGCGGCGTCTGAGGGCGACGACAATCCCTCGCCGCGGTGGATG
TCCTCCATATCCTCCATCTTCTCACGCGGCAAGACTGTGGTTGTTGCTGA
TTCCGCAATCAAAGATGCCTCTTTAGGGGACGTGGCGGTGGGGAAAGAGG
GGGTCCACTCGACGGGAGGAAGTGCTGGCAAGACCGACCGCAAACAAAAA
TTAGCGAACAGCAGTAGTAGTGCCGATGATAAGAAGGCTGGGCGAGCGAC
GGGGGGGGGCGGTGCTGGTGCTGGTGCTGTAACCTCGGGCCGCAAAGCAA
GAAAAGGAATGCTACTCAGGCACGTTCGGAGGGGCACGACGCAATGGCTC
AAGAAGGCACGGCACGCCGTGGGATCGTGGCGGGCACTTCACAAAGAGGA
TGGCGAGGCGTTTTTGTCGGGGGATAAGTAGGTGGTCCGCCGTGGTCAAC
AACAACAACGAGCACGCTCCCCCCGTGCTATCGACGGTAACTACTGCCCC
AACCAATGCGGCGGCGGCGTCTGAGGGCGACGACAATCCCTCGCCGCGGT
GGATGTCCTCCATATCCTCCATCTTCTCACGCGGCAAGACTGTGGTTGTT
GCTGATTCCGCAATCAAAGATGCCTCTTTAGGGGACGTGGCGGTGGGGAA
AGAGGGGGTCCACTCGACGGGAGGAAGTGCTGGCAAGACCGACCGCAAAC
AAAAATTAGCGAACAGCAGTAGTAGTGCCGATGATAAGAAGGCTGGGCGA
GCGACGGGGGGGGGCGGTGCTGGTGCTGGTGCTGTAACCTCGGGCCGCAA
AGCAAGAAAAGGAATGCTACTCAGGCACGTTCGGAGGGGCACGACGCAAT
GGCTCAAGAAGGCACGGCACGCCGTGGGATCGTGGCGGGCACTTCACAAA
GAGGATGGCGAGGCGTTTTTGTCGGGGGATAAGTAG
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