mRNA_D-herbacea_F_contig10.134.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.134.1
Unique NamemRNA_D-herbacea_F_contig10.134.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:376382..377568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.134.1prot_D-herbacea_F_contig10.134.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 376463..377568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.3681355-UTR-D-herbacea_F_contig10:376381..3764621622927398.3681355-UTR-D-herbacea_F_contig10:376381..376462Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 376382..376462 -
1690790148.0420496-UTR-D-herbacea_F_contig10:376381..3764621690790148.0420496-UTR-D-herbacea_F_contig10:376381..376462Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 376382..376462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.3793561-CDS-D-herbacea_F_contig10:376462..3766491622927398.3793561-CDS-D-herbacea_F_contig10:376462..376649Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 376463..376649 -
1690790148.0552266-CDS-D-herbacea_F_contig10:376462..3766491690790148.0552266-CDS-D-herbacea_F_contig10:376462..376649Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 376463..376649 -
1622927398.38882-CDS-D-herbacea_F_contig10:377461..3775681622927398.38882-CDS-D-herbacea_F_contig10:377461..377568Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 377462..377568 -
1690790148.077336-CDS-D-herbacea_F_contig10:377461..3775681690790148.077336-CDS-D-herbacea_F_contig10:377461..377568Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 377462..377568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.134.1

>prot_D-herbacea_F_contig10.134.1 ID=prot_D-herbacea_F_contig10.134.1|Name=mRNA_D-herbacea_F_contig10.134.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=98bp
RPGAAVTGPGVLFVSWRGWCEPPTVGRLLYDLKKNRSTTTKNRSLQGSST
HLVPKRNRTQLYFRGLNQASARALPPWSPNRGETKGISSSESRVSFL*
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mRNA from alignment at D-herbacea_F_contig10:376382..377568-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.134.1 ID=mRNA_D-herbacea_F_contig10.134.1|Name=mRNA_D-herbacea_F_contig10.134.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1187bp|location=Sequence derived from alignment at D-herbacea_F_contig10:376382..377568- (Desmarestia herbacea DmunF female)
AGGCCGGGTGCTGCCGTGACAGGGCCCGGCGTGCTGTTTGTGTCGTGGCG
CGGTTGGTGTGAGCCTCCGACCGTCGGGAGATTATTATACGACCTGAAGA
AAAACAGGCAAGTTCGTTTGTGGCCTTTTATGTTAGGAGGTGACGTGTTT
ATGCCGTGCTCGAGTTGCTTCCCCCCCACGGTGCTGCAATGGGCGGTGGC
GATGTATTGCGCGAGTGAACTAGGAGTTGAACCTTCGTCTGTGTGCGTCG
ATGACCTCTTTCGCGGTTGTTGTCTCGGCCGCTAGCTGTCGAGCGCTTCG
CGGGGCACATGCGCTAGTAGGGCGAAGGCCCTCCTGGTGTTATATTGTGG
GCTGTGGGGGTCATTTTGCTCTTTCTCGAAAGCGAGTGTCTGTGTCTCCA
TGTGGTCAGTCTAGCAATCCCCCGCGTGCGTTGGTGTTGCGGGCATGTTA
GATGCTCTTGTTGACGTTGCTGAGGTGGAACATTTGCTGGGTTTTTGTGT
TTTCTTCGTGTTGTTCAAGAGGGGAGTGCGCCGCACGTTGATGCCAGCCT
GTCCTTGTCTGAATAAGCTCACCTTCTCTGTATCATAGGCGTTCAACAAC
TTTGGCAGCACTTTAATTGGTGGTAGACAGCCATACCGAAACCAGGACAG
CAGAGAGAGAGCCACGTGCTTGCTCCTTCGCTTTTGCCAGGACTCGCCAG
CCCACAGTCGTTTTCGAACAACGTACAATATATAAATAATACGTTATCCT
ACGCCCGTCGTTTACAACGTGTATCCTTCCTCAAATCCACGACCACAATC
ATGTTATTCCCTCACAGCAGGAGGCACTTTGCACCCCAACCCGCTTTTCT
CGTCTCTCTGTTGATCGTTTGTTTCTCCCACACTGGCTTGACCTCAACTC
CACCTACGTACACACGCAGGTCAACAACAACAAAAAACAGATCCCTTCAA
GGCAGCAGTACTCACTTAGTTCCAAAGCGCAATCGGACACAGCTTTACTT
CCGGGGACTAAACCAAGCAAGCGCCCGCGCGCTCCCCCCCTGGTCACCCA
ACCGGGGGGAGACAAAGGGAATATCATCATCTGAGTCACGGGTATCTTTT
TTATAGCTGTCAGCAGCTCTACTGTGTCTGCGAGTTGCTGCGGCTACTCC
GAAGTATGGAGGAAGAGGGCAAGAATTCCACAGCGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:376382..377568-

>mRNA_D-herbacea_F_contig10.134.1 ID=mRNA_D-herbacea_F_contig10.134.1|Name=mRNA_D-herbacea_F_contig10.134.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=588bp|location=Sequence derived from alignment at D-herbacea_F_contig10:376382..377568- (Desmarestia herbacea DmunF female)
AGGCCGGGTGCTGCCGTGACAGGGCCCGGCGTGCTGTTTGTGTCGTGGCG
CGGTTGGTGTGAGCCTCCGACCGTCGGGAGATTATTATACGACCTGAAGA
AAAACAGAGGCCGGGTGCTGCCGTGACAGGGCCCGGCGTGCTGTTTGTGT
CGTGGCGCGGTTGGTGTGAGCCTCCGACCGTCGGGAGATTATTATACGAC
CTGAAGAAAAACAGGTCAACAACAACAAAAAACAGATCCCTTCAAGGCAG
CAGTACTCACTTAGTTCCAAAGCGCAATCGGACACAGCTTTACTTCCGGG
GACTAAACCAAGCAAGCGCCCGCGCGCTCCCCCCCTGGTCACCCAACCGG
GGGGAGACAAAGGGAATATCATCATCTGAGTCACGGGTATCTTTTTTATA
GGTCAACAACAACAAAAAACAGATCCCTTCAAGGCAGCAGTACTCACTTA
GTTCCAAAGCGCAATCGGACACAGCTTTACTTCCGGGGACTAAACCAAGC
AAGCGCCCGCGCGCTCCCCCCCTGGTCACCCAACCGGGGGGAGACAAAGG
GAATATCATCATCTGAGTCACGGGTATCTTTTTTATAG
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