mRNA_D-herbacea_F_contig113.1021.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1021.1
Unique NamemRNA_D-herbacea_F_contig113.1021.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:461641..462103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size463
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.23856-UTR-D-herbacea_F_contig113:461640..4617311622927530.23856-UTR-D-herbacea_F_contig113:461640..461731Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 461641..461731 +
1690790218.0646827-UTR-D-herbacea_F_contig113:461640..4617311690790218.0646827-UTR-D-herbacea_F_contig113:461640..461731Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig113 461641..461731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.254627-CDS-D-herbacea_F_contig113:461731..4621031622927530.254627-CDS-D-herbacea_F_contig113:461731..462103Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 461732..462103 +
1690790218.0745926-CDS-D-herbacea_F_contig113:461731..4621031690790218.0745926-CDS-D-herbacea_F_contig113:461731..462103Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 461732..462103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1021.1prot_D-herbacea_F_contig113.1021.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 461732..462103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1021.1

>prot_D-herbacea_F_contig113.1021.1 ID=prot_D-herbacea_F_contig113.1021.1|Name=mRNA_D-herbacea_F_contig113.1021.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=124bp
MKKNHHFGHSQKHRVRFVRENQAPSIVKRWYDRWLEKSSLFGSSYIIFFA
LTSATSTAAAVSIVRFAVQKRTFPQNNNFVPRRVRSQPSQPFNRANLQKL
WLFQRHTHRRENKPNNTSQPGAT*
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mRNA from alignment at D-herbacea_F_contig113:461641..462103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1021.1 ID=mRNA_D-herbacea_F_contig113.1021.1|Name=mRNA_D-herbacea_F_contig113.1021.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=463bp|location=Sequence derived from alignment at D-herbacea_F_contig113:461641..462103+ (Desmarestia herbacea DmunF female)
CCCAGCCCTCTGCCCGCCAAAAAAAACAAACGCTCCACCACGCACGGTAA
TAAAACCTTAGCACAACACTCACGTACGACCAGAAACACAAATGAAAAAA
AATCACCATTTTGGCCACTCACAAAAACATCGCGTACGGTTTGTGAGGGA
AAACCAAGCACCATCTATCGTAAAGCGCTGGTATGATAGATGGCTTGAAA
AATCTTCGCTTTTTGGCTCCTCTTATATTATTTTTTTTGCTCTCACGTCT
GCTACCTCCACGGCTGCCGCTGTGTCCATTGTGCGGTTTGCCGTCCAAAA
ACGAACGTTTCCACAAAACAATAATTTTGTGCCGCGTCGCGTCAGGTCAC
AACCATCACAACCGTTCAACCGCGCCAACCTCCAAAAACTCTGGCTTTTT
CAGCGCCACACACACCGCAGAGAAAATAAACCCAACAATACGTCCCAACC
GGGTGCGACGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:461641..462103+

>mRNA_D-herbacea_F_contig113.1021.1 ID=mRNA_D-herbacea_F_contig113.1021.1|Name=mRNA_D-herbacea_F_contig113.1021.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=744bp|location=Sequence derived from alignment at D-herbacea_F_contig113:461641..462103+ (Desmarestia herbacea DmunF female)
ATGAAAAAAAATCACCATTTTGGCCACTCACAAAAACATCGCGTACGGTT
TGTGAGGGAAAACCAAGCACCATCTATCGTAAAGCGCTGGTATGATAGAT
GGCTTGAAAAATCTTCGCTTTTTGGCTCCTCTTATATTATTTTTTTTGCT
CTCACGTCTGCTACCTCCACGGCTGCCGCTGTGTCCATTGTGCGGTTTGC
CGTCCAAAAACGAACGTTTCCACAAAACAATAATTTTGTGCCGCGTCGCG
TCAGGTCACAACCATCACAACCGTTCAACCGCGCCAACCTCCAAAAACTC
TGGCTTTTTCAGCGCCACACACACCGCAGAGAAAATAAACCCAACAATAC
GTCCCAACCGGGTGCGACGTGAATGAAAAAAAATCACCATTTTGGCCACT
CACAAAAACATCGCGTACGGTTTGTGAGGGAAAACCAAGCACCATCTATC
GTAAAGCGCTGGTATGATAGATGGCTTGAAAAATCTTCGCTTTTTGGCTC
CTCTTATATTATTTTTTTTGCTCTCACGTCTGCTACCTCCACGGCTGCCG
CTGTGTCCATTGTGCGGTTTGCCGTCCAAAAACGAACGTTTCCACAAAAC
AATAATTTTGTGCCGCGTCGCGTCAGGTCACAACCATCACAACCGTTCAA
CCGCGCCAACCTCCAAAAACTCTGGCTTTTTCAGCGCCACACACACCGCA
GAGAAAATAAACCCAACAATACGTCCCAACCGGGTGCGACGTGA
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