mRNA_D-herbacea_F_contig112.974.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig112.974.1
Unique NamemRNA_D-herbacea_F_contig112.974.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig112contigD-herbacea_F_contig112:117714..117993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size269
Cds size177
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig112.974.1prot_D-herbacea_F_contig112.974.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig112 117714..117903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.548987-CDS-D-herbacea_F_contig112:117713..1178661622927526.548987-CDS-D-herbacea_F_contig112:117713..117866Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 117714..117866 +
1690790216.1122959-CDS-D-herbacea_F_contig112:117713..1178661690790216.1122959-CDS-D-herbacea_F_contig112:117713..117866Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 117714..117866 +
1622927526.561419-CDS-D-herbacea_F_contig112:117879..1179031622927526.561419-CDS-D-herbacea_F_contig112:117879..117903Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 117880..117903 +
1690790216.1233292-CDS-D-herbacea_F_contig112:117879..1179031690790216.1233292-CDS-D-herbacea_F_contig112:117879..117903Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 117880..117903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.5708833-UTR-D-herbacea_F_contig112:117903..1179931622927526.5708833-UTR-D-herbacea_F_contig112:117903..117993Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig112 117904..117993 +
1690790216.1318896-UTR-D-herbacea_F_contig112:117903..1179931690790216.1318896-UTR-D-herbacea_F_contig112:117903..117993Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig112 117904..117993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig112.974.1

>prot_D-herbacea_F_contig112.974.1 ID=prot_D-herbacea_F_contig112.974.1|Name=mRNA_D-herbacea_F_contig112.974.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=59bp
SVLPSLCCAGVWVAVVCNKFCISCETRIVKVKTQGVAELPPACEIANFSR
RHQWVGPM*
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mRNA from alignment at D-herbacea_F_contig112:117714..117993+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig112.974.1 ID=mRNA_D-herbacea_F_contig112.974.1|Name=mRNA_D-herbacea_F_contig112.974.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=280bp|location=Sequence derived from alignment at D-herbacea_F_contig112:117714..117993+ (Desmarestia herbacea DmunF female)
TCTGTGCTGCCCTCTCTCTGTTGTGCTGGCGTGTGGGTTGCGGTAGTTTG
CAACAAATTTTGCATCTCATGTGAAACAAGAATCGTTAAGGTCAAAACAC
AGGGTGTTGCCGAACTTCCCCCGGCGTGCGAAATCGCGAACTTTTCCAGG
CGTGCGAAACCACGAGCACCAGTGGGTCGGGCCTATGTAGATCTTTCGTT
CAAGCACGTGTTCGCCGTGATCCGTGCTGAAATGGCCGCGTTCGATGTCA
AAAACCGGAAAAAGCCGGTTAGAAAAAACG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig112:117714..117993+

>mRNA_D-herbacea_F_contig112.974.1 ID=mRNA_D-herbacea_F_contig112.974.1|Name=mRNA_D-herbacea_F_contig112.974.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=354bp|location=Sequence derived from alignment at D-herbacea_F_contig112:117714..117993+ (Desmarestia herbacea DmunF female)
TCTGTGCTGCCCTCTCTCTGTTGTGCTGGCGTGTGGGTTGCGGTAGTTTG
CAACAAATTTTGCATCTCATGTGAAACAAGAATCGTTAAGGTCAAAACAC
AGGGTGTTGCCGAACTTCCCCCGGCGTGCGAAATCGCGAACTTTTCCAGG
CGTTCTGTGCTGCCCTCTCTCTGTTGTGCTGGCGTGTGGGTTGCGGTAGT
TTGCAACAAATTTTGCATCTCATGTGAAACAAGAATCGTTAAGGTCAAAA
CACAGGGTGTTGCCGAACTTCCCCCGGCGTGCGAAATCGCGAACTTTTCC
AGGCGTCACCAGTGGGTCGGGCCTATGTAGCACCAGTGGGTCGGGCCTAT
GTAG
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