mRNA_D-herbacea_F_contig111.951.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.951.1
Unique NamemRNA_D-herbacea_F_contig111.951.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig111.951.1 vs. uniprot
Match: A0A6H5KZU5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-12
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = -1 
Query:   28 GLSGPLAFRLMI*SFTTAFTDIDVSRVSTLLSIFSVPVNTPLKQWYAELKALVGGIMLVSDDPPSVASVCKQITASLHAQYPHASFNLAPLIAVSVGHTSVENVFFAL-RACEKSFARAQAAPHLGVSPPLPSFSPTP-----PRVMAV 456
            G+SGP+A +    S     + I VSR+ST+L  F+VP  TP K W+AE++ L+ G+    D  P  +++    T  L  Q+P  + N A  +A     T+    FFAL +    S   AQA  H+G +P   SF PT      PRVM V
Sbjct:  530 GISGPVALQEPTDSMLKMISQIQVSRISTMLQQFNVPEGTPFKTWFAEIRRLIEGLRCFGDRCPEESALIACATECLSIQFPTVAMNFADKLA----KTTTSRGFFALFKGHTSSAIPAQAPTHVGPAPARHSF-PTQSKSQQPRVMMV 673
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BLAST of mRNA_D-herbacea_F_contig111.951.1 vs. uniprot
Match: A0A6H5K8B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.970e-12
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = -1 
Query:   13 GLSGPLAFRLMI*SFTTAFTDIDVSRVSTLLSIFSVPVNTPLKQWYAELKALVGGIMLVSDDPPSVASVCKQITASLHAQYPHASFNLAPLIAVSVGHTSVENVFFALRACEKSFA-RAQAAPHLGVSPPLPSFSPTP-----PRVMAVTNNRY 456
            G+SGP+  + +  S    F+ I VSR+ T+L  F+VP  TP K W+AE++ L+ G+    D  P  +++       L  Q+P  + N A  +A      +    FFAL     S A  AQA  H+G +P   SF PT      PRVM V    Y
Sbjct:  180 GVSGPVGLQELTDSMLKMFSQIQVSRIPTMLQQFNVPEGTPFKTWFAEIRRLIEGLRCFGDRCPEESALIACAIECLSIQFPTVAMNFADKLA----KITTSRGFFALFKDHTSSAIPAQAPTHVGATPARHSF-PTQSKSQQPRVMMVHGGTY 328
[Close]
BLAST of mRNA_D-herbacea_F_contig111.951.1 vs. uniprot
Match: A0A6H5K3K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.350e-8
Identity = 49/149 (32.89%), Postives = 70/149 (46.98%), Query Frame = -1 
Query:   28 GLSGPLAFRLMI*SFTTAFTDIDVSRVSTLLSIFSVPVNTPLKQWYAELKALVGGIMLVSDDPPSVASVCKQITASLHAQYPHASFNLAPLIAVSVGHTSVENVFFALRACEKSFA-RAQAAPHLGVSPPLPSFSPTP-----PRVMAV 456
            G+ GP   + +  S    F+ I VSR+ ++L  F+VP  TP   W  E++ L+ G+    D  P  +++    T  L  Q+P  + N A  +A      +    FFAL     S A  AQA  H+G +P   SF PT      PRVM V
Sbjct:   14 GVLGPAGLQELTDSVLKIFSQIQVSRIPSMLQQFNVPEGTPFMSWSTEIRRLIEGLRWFGDRCPEESALIVCATECLSIQFPTVAMNFADKLA----KITTSRGFFALFEDHTSSAIPAQAPTHVGAAPARHSF-PTQSKSQQPRVMMV 157
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZU5_9PHAE2.360e-1236.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K8B8_9PHAE9.970e-1234.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K5_9PHAE7.350e-832.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:566001..566649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size650
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.879048-CDS-D-herbacea_F_contig111:566000..5666481622927519.879048-CDS-D-herbacea_F_contig111:566000..566648Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 566001..566648 +
1690790213.6345756-CDS-D-herbacea_F_contig111:566000..5666481690790213.6345756-CDS-D-herbacea_F_contig111:566000..566648Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 566001..566648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.951.1prot_D-herbacea_F_contig111.951.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 566001..566648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.951.1

>prot_D-herbacea_F_contig111.951.1 ID=prot_D-herbacea_F_contig111.951.1|Name=mRNA_D-herbacea_F_contig111.951.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=216bp
HQLNITVVCNRHDSGRRGGKRRQWWRHPQVGRSLRARKTLLASAQSKKNV
FYRCVANGDCYQRRQIKRRVRILSMQTRGDLFTHGGNGRRIIRNEHDTTY
QGFQLGIPLFQWRVHRHRKNRQKRAHARNVNVRESGRERLDHQPERQRTR
QTRTNLVIDHLKNFVNFHLDIIRAHRSSAHRRQQRSTQRYRPVRVPLLRI
GVARHLAQFPCSPGDL
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mRNA from alignment at D-herbacea_F_contig111:566001..566649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.951.1 ID=mRNA_D-herbacea_F_contig111.951.1|Name=mRNA_D-herbacea_F_contig111.951.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=649bp|location=Sequence derived from alignment at D-herbacea_F_contig111:566001..566649+ (Desmarestia herbacea DmunF female)
CATCAACTCAACATAACGGTTGTTTGTAACCGCCATGACTCGGGGAGGCG
TGGGGGAAAACGACGGCAATGGTGGAGACACCCCCAAGTGGGGCGCAGCC
TGCGCGCGCGCAAAACTCTTCTCGCAAGCGCGCAAAGCAAAAAAAACGTT
TTCTACCGATGTGTGGCCAACGGAGACTGCTATCAACGGCGCCAAATTAA
ACGACGCGTGCGGATACTGAGCATGCAAACTCGCGGTGATCTGTTTACAC
ACGGAGGCAACGGAAGGCGGATCATCAGAAACGAGCATGATACCACCTAC
CAAGGCTTTCAACTCGGCATACCATTGTTTCAATGGCGTGTTCACCGGCA
CCGAAAAAATCGACAAAAGCGTGCTCACGCGAGAAACGTCAATGTCCGTG
AAAGCGGTCGTGAACGATTAGATCATCAACCGGAACGCCAAAGGACCAGA
CAAACCCGCACGAATTTGGTCATCGACCACCTGAAAAATTTCGTCAATTT
TCACCTTGACATCATCCGCGCCCACCGCTCCAGTGCGCACCGTAGACAAC
AACGCTCGACGCAGAGGTACCGACCAGTTCGGGTGCCACTGCTCCGGATC
GGCGTCGCCCGCCATCTCGCGCAATTCCCGTGCAGTCCGGGTGACTTGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:566001..566649+

>mRNA_D-herbacea_F_contig111.951.1 ID=mRNA_D-herbacea_F_contig111.951.1|Name=mRNA_D-herbacea_F_contig111.951.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1296bp|location=Sequence derived from alignment at D-herbacea_F_contig111:566001..566649+ (Desmarestia herbacea DmunF female)
CATCAACTCAACATAACGGTTGTTTGTAACCGCCATGACTCGGGGAGGCG
TGGGGGAAAACGACGGCAATGGTGGAGACACCCCCAAGTGGGGCGCAGCC
TGCGCGCGCGCAAAACTCTTCTCGCAAGCGCGCAAAGCAAAAAAAACGTT
TTCTACCGATGTGTGGCCAACGGAGACTGCTATCAACGGCGCCAAATTAA
ACGACGCGTGCGGATACTGAGCATGCAAACTCGCGGTGATCTGTTTACAC
ACGGAGGCAACGGAAGGCGGATCATCAGAAACGAGCATGATACCACCTAC
CAAGGCTTTCAACTCGGCATACCATTGTTTCAATGGCGTGTTCACCGGCA
CCGAAAAAATCGACAAAAGCGTGCTCACGCGAGAAACGTCAATGTCCGTG
AAAGCGGTCGTGAACGATTAGATCATCAACCGGAACGCCAAAGGACCAGA
CAAACCCGCACGAATTTGGTCATCGACCACCTGAAAAATTTCGTCAATTT
TCACCTTGACATCATCCGCGCCCACCGCTCCAGTGCGCACCGTAGACAAC
AACGCTCGACGCAGAGGTACCGACCAGTTCGGGTGCCACTGCTCCGGATC
GGCGTCGCCCGCCATCTCGCGCAATTCCCGTGCAGTCCGGGTGACTTGCA
TCAACTCAACATAACGGTTGTTTGTAACCGCCATGACTCGGGGAGGCGTG
GGGGAAAACGACGGCAATGGTGGAGACACCCCCAAGTGGGGCGCAGCCTG
CGCGCGCGCAAAACTCTTCTCGCAAGCGCGCAAAGCAAAAAAAACGTTTT
CTACCGATGTGTGGCCAACGGAGACTGCTATCAACGGCGCCAAATTAAAC
GACGCGTGCGGATACTGAGCATGCAAACTCGCGGTGATCTGTTTACACAC
GGAGGCAACGGAAGGCGGATCATCAGAAACGAGCATGATACCACCTACCA
AGGCTTTCAACTCGGCATACCATTGTTTCAATGGCGTGTTCACCGGCACC
GAAAAAATCGACAAAAGCGTGCTCACGCGAGAAACGTCAATGTCCGTGAA
AGCGGTCGTGAACGATTAGATCATCAACCGGAACGCCAAAGGACCAGACA
AACCCGCACGAATTTGGTCATCGACCACCTGAAAAATTTCGTCAATTTTC
ACCTTGACATCATCCGCGCCCACCGCTCCAGTGCGCACCGTAGACAACAA
CGCTCGACGCAGAGGTACCGACCAGTTCGGGTGCCACTGCTCCGGATCGG
CGTCGCCCGCCATCTCGCGCAATTCCCGTGCAGTCCGGGTGACTTG
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