mRNA_D-herbacea_F_contig11.843.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: B5LWG9_9PHYC (Putative PCNA n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG9_9PHYC) HSP 1 Score: 432 bits (1111), Expect = 7.120e-151 Identity = 212/285 (74.39%), Postives = 254/285 (89.12%), Query Frame = 1
Query: 10 SGKELISVGHGEEMEDSVA-ETSKKQPFHDDRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
S K + VGH E MED+++ + +QP H+DRKLI L+RTSQC QFKSL ECLKELLT+VN+EFIE KGIRLVSIDPG +AMVHLV+N+VEYFY GT+TAG+NMAFLY+MIRSLSSGDYMEWRIYED+PH M IEL N++RRT+T++++ LLDLDEV ISIP+VE+DRVVSMPSSEL+KHVREMVA+SNF+T+RGT+STLEF+++G+MASSHITI PTASGLNWK SEDV DIEGKFVV+YLEKF + VE+NVE+FLK ++PLI RYELSIGTLRFV+APVKD
Sbjct: 2 SSKIPVDVGHAETMEDTLSVKNPVQQPMHEDRKLIFLMRTSQCAQFKSLCECLKELLTDVNMEFIENKGIRLVSIDPGRVAMVHLVVNSVEYFYVKGTVTAGMNMAFLYRMIRSLSSGDYMEWRIYEDNPHAMNIELYNSDRRTRTVSSMKLLDLDEVEISIPNVEYDRVVSMPSSELSKHVREMVAVSNFVTVRGTRSTLEFIAEGEMASSHITIHPTASGLNWKFSEDVGDIEGKFVVRYLEKFGRVGVEANVELFLKTDFPLILRYELSIGTLRFVIAPVKD 286
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: Q6XM81_9PHYC (FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM81_9PHYC) HSP 1 Score: 392 bits (1007), Expect = 2.530e-135 Identity = 191/263 (72.62%), Postives = 235/263 (89.35%), Query Frame = 1
Query: 76 KKQPFHDDRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVED-IEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
++QP D RKLI LLRTSQ QFK+L ECLKELLT+VN+EFI+ KGIRLVSIDPG +AMVHLVIN+VEYFYA GT+TAG+NM+FLY+MIR L+SGD MEWR++ED PH M IEL N +RRT+T+++I LLDLDEV+ISIP VE+DR+VSMPSSEL+KHVREM+A+SN++T+R TK+TL+F+++GDMA+SHITI PTASGLNWK+S+DV IEGKFVV+YLEKF + VE+NVE+FLKKN+PLI RYEL+IGTLRFV+APVKD
Sbjct: 5 QEQPTCDGRKLIALLRTSQSTQFKNLCECLKELLTDVNLEFIQDKGIRLVSIDPGRVAMVHLVINSVEYFYAQGTVTAGLNMSFLYRMIRCLTSGDSMEWRVFEDDPHTMHIELYNNDRRTRTVSSIKLLDLDEVDISIPEVEYDRIVSMPSSELSKHVREMIAVSNYVTVRTTKTTLQFIAEGDMATSHITIHPTASGLNWKYSDDVVGTIEGKFVVRYLEKFGRVGVEANVELFLKKNFPLILRYELTIGTLRFVIAPVKD 267
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: D8LPF8_ECTSI (Proliferating cell nuclear antigen n=2 Tax=root TaxID=1 RepID=D8LPF8_ECTSI) HSP 1 Score: 375 bits (963), Expect = 1.970e-128 Identity = 180/261 (68.97%), Postives = 225/261 (86.21%), Query Frame = 1
Query: 79 KQPFHDDRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
+QP + R L+++++TSQCLQFKSL ECLKELL EVN++FIE KGIRLVSIDPG +AM+HLV+N +E FYA GT+TAG+N+ LYKMIRS++S D+MEWRIYED PH+M+IELSN+ERRTKT+ +I LLDLD +I IP VEFDRVVSMPSSEL+KHVREMV +S FI+IR T++TLE VS+G+MA SHITIEPTASGLNWKHSE EDIEGK+ +Y+EKF+K+++ NVE+FLK NYPLI R+E+SIG LRF +AP++D
Sbjct: 18 EQPSYKGRPLVLMMQTSQCLQFKSLIECLKELLCEVNMDFIEGKGIRLVSIDPGRVAMIHLVVNNIESFYAKGTVTAGLNVVVLYKMIRSMTSNDFMEWRIYEDEPHRMEIELSNSERRTKTVTSIKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATQTTLELVSEGEMAKSHITIEPTASGLNWKHSEKGEDIEGKYFARYIEKFTKNSLAINVELFLKANYPLILRFEISIGCLRFCIAPIQD 278
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A836CHQ2_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ2_9STRA) HSP 1 Score: 187 bits (474), Expect = 3.280e-54 Identity = 107/264 (40.53%), Postives = 170/264 (64.39%), Query Frame = 1
Query: 97 DRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYM-EWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNW------KHSEDVED--IEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
D I+ +R+SQ Q++ L + LK+L+TE + F + G++L+S+DP +A++HL + E++Y IT G+N+ LYKM+R+L++G YM E+ + + I+L N+++RT T N + LL L + + IP F RV+S+PS++L +HVRE+ A+SN I I+ T L ++G M SS I I PTASG++W + SE D +EG + K+LE+FS+ ++ EIF+K+NYPL+ RY LS T+R V+APV++
Sbjct: 32 DPDCILCMRSSQTSQWRLLVDFLKDLITECPISF-SQDGMKLISLDPIKVALLHLQAKS-EFYYCKSEITVGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 292
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835Z7L8_9STRA (Proliferating cell nuclear antigen n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L8_9STRA) HSP 1 Score: 181 bits (460), Expect = 4.300e-52 Identity = 103/252 (40.87%), Postives = 163/252 (64.68%), Query Frame = 1
Query: 133 CLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYM-EWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNW------KHSEDVED--IEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
C Q++ L + LK+L+TE + F + G++L+S+DP +A++HL + E++Y IT G+N+ LYKM+R+L++G YM E+ + + I+L N+++RT T N + LL L + + IP F RV+S+PS++L +HVRE+ A+SN I I+ T L ++G M SS I I PTASG++W + SE D +EG + K+LE+FS+ ++ EIF+K+NYPL+ RY LS T+R V+APV++
Sbjct: 46 CSQWRLLVDFLKDLITECPISF-NQDGMKLISLDPIKVALLHLQAKS-EFYYCKSEITIGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 294
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835YX88_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX88_9STRA) HSP 1 Score: 182 bits (462), Expect = 5.140e-52 Identity = 102/256 (39.84%), Postives = 171/256 (66.80%), Query Frame = 1
Query: 106 LIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDY-MEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKH--SEDVEDI-EGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
++V +RT Q+++L + LK+L++E V F G++LVS+DP ++A+V+L I + E++Y IT G+N+A LYKM+R+L++G Y +E + ED P +++ +SN ++RT+T N LL L + I+IP F RV+S+PS++ +++RE+ +SN I IR T+ L ++G S+ I I PTASG++W+ SE +++ EG F +Y+E+F++ ++S VEIF+K+ YPL+ RY+L T+R V+A D
Sbjct: 66 ILVCMRTHHTQQWRTLTDALKDLISESPVTF-GPAGMKLVSMDPAHVALVNLQIQS-EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARP-LDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTD 318
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835Z117_9STRA (Proliferating cell nuclear antigen n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z117_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.130e-51 Identity = 97/254 (38.19%), Postives = 165/254 (64.96%), Query Frame = 1
Query: 109 IVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYM-EWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKH------SEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVA 849
+V +RT Q+++L + LK+L+ E V F G++L+S+DP ++A+++L + + E++Y T G+N+A LY+M+R+L++G Y+ E + E P + I ++N E+RT+T N + LL L E I+IP F RV+S+PS++ +++RE+ +SN I+IR TK L + G M ++ I + PTASG++W+H E+ E +EG ++ KYLE+FS+ ++ VEIF++ YPL+ RY +S +R V+A
Sbjct: 49 VVCMRTHHTQQWRTLIDALKDLIPESPVTF-GASGMKLISMDPAHVALINLQVCS-EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRP-LDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 299
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835Z2Q5_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q5_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.950e-48 Identity = 93/259 (35.91%), Postives = 170/259 (65.64%), Query Frame = 1
Query: 109 IVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAV-EYFYALGTITAGINMAFLYKMIRSLSSGDY-MEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNW------KHSEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
I+++R++Q Q++S+F+ +K++ TEV +F + +G+ ++++DP IA++ + AV E++Y + GIN+ LY+++R+L+S Y +E ++++ + ++++N ++R+ N I LL L + I+IP FDRV+S+PSS+L +++RE+ ++S+ IT+ T+ L + G + SS IT+ PT+SG+++ KH E V +F +YLEK + ++S+ E+FLKK YPL+ RY L+ T+R V+APV D
Sbjct: 26 ILMMRSTQTSQWRSIFDFVKDVTTEVPFKF-DTEGLSIITLDPLKIALIS--VRAVTEFYYCKAPLNVGINVTVLYRLLRNLTSAGYVLEISMFQNETDVIHVQITNRDKRSVVRNKIKLLRLPDEVITIPSTTFDRVLSIPSSDLQRYIRELSSLSSKITVSSTRDELTLSAQGALGSSEITVRPTSSGVHFLFKDTEKHDEVVS---ARFYSRYLEKLCRP-IDSSTEVFLKKGYPLVLRYNLATATIRVVIAPVND 277
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A6C0K8R3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K8R3_9ZZZZ) HSP 1 Score: 160 bits (404), Expect = 3.660e-44 Identity = 91/255 (35.69%), Postives = 155/255 (60.78%), Query Frame = 1
Query: 103 KLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINA--VEYFYA-LGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKS-NVESNVEIFLKKNYPLIFRYEL-SIGTLRFVVAP 852
+++V T Q K LFE +KE+L +VN+ F +K G+++ ++D A VH+ + E+F L + AG+NM L+K+I+++ S D +++ IY++ P+++ I N+ + T T + + LLD++E SIP VEFD ++MPS + K+ R++ S I IR + LE ++DGD AS H+ I ++ N ++ E +EG + VKYL F+KS N+ + VE++L YPLI Y + ++G L++ +AP
Sbjct: 8 EILVSFHTVQGTTIKGLFESMKEILNDVNMRF-DKTGMKITAMDGNKCACVHIKLEGSKFEHFECNLENVVAGVNMLSLFKLIKTIGSHDTVKFNIYKNKPYELVIMFENSSKNTTTKSVLKLLDINEDIYSIPDVEFDSQINMPSLDFQKYCRDLSIFSEVIKIRSGPAGLELIADGDFASQHVCISQSSDDANMHINKGTEAVEGIYSVKYLNLFTKSTNLSNIVELYLMNEYPLILVYYVGNLGKLQYCLAP 261
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A6C0LE56_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LE56_9ZZZZ) HSP 1 Score: 158 bits (399), Expect = 1.680e-43 Identity = 90/260 (34.62%), Postives = 156/260 (60.00%), Query Frame = 1
Query: 97 DRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVI--NAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITI-EPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKS-NVESNVEIFLKKNYPLIFRYELS-IGTLRFVVAPVKD 861
D IV ++T Q + LFE LK++LT+VN++ +G++++S+D A+V+L + N E FY ++ AG+NM LYK+I+S+ + D + + I S K+QIE+ N E++T + + LLD+DE + IP++EFD V +MPS++ ++RE+ I+N +T+ +T +GD A + I + + + +H G F +KYL F+KS N+ + VEI+LK +PLI Y ++ +G L++ +AP+ +
Sbjct: 3 DSDRIVEIKTVQSNAIRILFEALKDILTDVNLQISSSEGLKIISMDGSKQAVVNLKLEANKFEKFYCKNSMRAGLNMTSLYKIIKSVKNSDIITFYILAGSSTKLQIEIENKEKKTNILTVLKLLDIDEDILDIPNIEFDTVKTMPSNDFQSYIRELSIITNKVTLESKNNTFSLSGEGDFAETKINVGDSNTIDIKTEHHAM-----GTFYIKYLLLFTKSTNLCTTVEIYLKNKFPLILVYNVANLGKLQYCLAPLVE 257 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig11.843.1 >prot_D-herbacea_F_contig11.843.1 ID=prot_D-herbacea_F_contig11.843.1|Name=mRNA_D-herbacea_F_contig11.843.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=288bp MKYSGKELISVGHGEEMEDSVAETSKKQPFHDDRKLIVLLRTSQCLQFKSback to top mRNA from alignment at D-herbacea_F_contig11:831494..832357+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig11.843.1 ID=mRNA_D-herbacea_F_contig11.843.1|Name=mRNA_D-herbacea_F_contig11.843.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=864bp|location=Sequence derived from alignment at D-herbacea_F_contig11:831494..832357+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig11:831494..832357+ >mRNA_D-herbacea_F_contig11.843.1 ID=mRNA_D-herbacea_F_contig11.843.1|Name=mRNA_D-herbacea_F_contig11.843.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1728bp|location=Sequence derived from alignment at D-herbacea_F_contig11:831494..832357+ (Desmarestia herbacea DmunF female)back to top |