mRNA_D-herbacea_F_contig1077.697.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1077.697.1
Unique NamemRNA_D-herbacea_F_contig1077.697.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1077.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1077contigD-herbacea_F_contig1077:2399..3251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size531
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1077.697.1prot_D-herbacea_F_contig1077.697.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1077 2399..3248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.9117641-CDS-D-herbacea_F_contig1077:2398..25581622927482.9117641-CDS-D-herbacea_F_contig1077:2398..2558Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1077 2399..2558 -
1690790194.7767463-CDS-D-herbacea_F_contig1077:2398..25581690790194.7767463-CDS-D-herbacea_F_contig1077:2398..2558Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1077 2399..2558 -
1622927482.9253583-CDS-D-herbacea_F_contig1077:2880..32481622927482.9253583-CDS-D-herbacea_F_contig1077:2880..3248Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1077 2881..3248 -
1690790194.7869086-CDS-D-herbacea_F_contig1077:2880..32481690790194.7869086-CDS-D-herbacea_F_contig1077:2880..3248Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1077 2881..3248 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.9434485-UTR-D-herbacea_F_contig1077:3248..32511622927482.9434485-UTR-D-herbacea_F_contig1077:3248..3251Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1077 3249..3251 -
1690790194.7979627-UTR-D-herbacea_F_contig1077:3248..32511690790194.7979627-UTR-D-herbacea_F_contig1077:3248..3251Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1077 3249..3251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1077.697.1

>prot_D-herbacea_F_contig1077.697.1 ID=prot_D-herbacea_F_contig1077.697.1|Name=mRNA_D-herbacea_F_contig1077.697.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=176bp
MKMVLEIGSPSEAWRALTKIADETENVAYDRAKREFETLEIGMNETVTEY
FARVNIVLMKLERYNIVTPEREIKRVVLSSLTSRFPSETCLYAMKGDFEL
KDLETGLARAEKFQSEQKRRSASSPTPGAAGKDHHEQRRGRGPHQRRSHH
RGGDQSHQQRVMCPQCGKEEHFPADC
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mRNA from alignment at D-herbacea_F_contig1077:2399..3251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1077.697.1 ID=mRNA_D-herbacea_F_contig1077.697.1|Name=mRNA_D-herbacea_F_contig1077.697.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=853bp|location=Sequence derived from alignment at D-herbacea_F_contig1077:2399..3251- (Desmarestia herbacea DmunF female)
ATAATGAAGATGGTATTAGAGATAGGTTCCCCCTCTGAGGCATGGCGAGC
ACTCACAAAAATAGCGGACGAGACCGAGAACGTCGCATACGACAGGGCAA
AAAGAGAATTTGAGACCCTGGAAATAGGAATGAACGAGACTGTAACCGAG
TACTTCGCCCGCGTGAACATTGTCCTGATGAAACTAGAGAGATACAATAT
AGTAACGCCCGAACGAGAGATCAAGCGCGTGGTACTGAGTAGCTTGACCT
CCCGCTTCCCGAGTGAGACTTGTCTGTATGCAATGAAAGGTGACTTCGAA
CTAAAAGACCTGGAAACTGGGCTGGCTCGCGCGGAGAAGTTCCAGTCAGA
ACAGAAGAGAAGGAGCGCCTCGTCCCATGCGTTAGCCGTTGCCCATGCGG
GCGGCGGCCAAACCGGGACTGGAGGTGGAGCCCGTGGACGAGGCCGGCAT
GGCAGGCACTCAGGCGGGCGCCACGACGATGGTCGTGGCCGCAATCAGCA
ACAAGGACATCCGTGGCAGATGTACCCCAGGCAGCAGCACCAGCCACCCG
CGTCGCTGCCACAACAGTCGCCCGCATGGCAGCAGCAACACCAGCACCAG
CACCAGCCGCGATTTCCGCAGCCACAACAGCAGGGACCGCGGCACCAGCA
GTCCAACCCCTGGAGCAGCTGGGAGACAACACCCCACCATCAGCAGCCCA
ACCCCTGGAGCAGCTGGGAAAGACCACCACGAACAGCGGCGAGGAAGAGG
GCCTCACCAGCGGAGATCGCATCATCGCGGAGGAGATCAGTCGCATCAGC
AGCGCGTCATGTGTCCGCAGTGCGGAAAGGAGGAGCACTTCCCCGCAGAC
TGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1077:2399..3251-

>mRNA_D-herbacea_F_contig1077.697.1 ID=mRNA_D-herbacea_F_contig1077.697.1|Name=mRNA_D-herbacea_F_contig1077.697.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1056bp|location=Sequence derived from alignment at D-herbacea_F_contig1077:2399..3251- (Desmarestia herbacea DmunF female)
ATGAAGATGGTATTAGAGATAGGTTCCCCCTCTGAGGCATGGCGAGCACT
CACAAAAATAGCGGACGAGACCGAGAACGTCGCATACGACAGGGCAAAAA
GAGAATTTGAGACCCTGGAAATAGGAATGAACGAGACTGTAACCGAGTAC
TTCGCCCGCGTGAACATTGTCCTGATGAAACTAGAGAGATACAATATAGT
AACGCCCGAACGAGAGATCAAGCGCGTGGTACTGAGTAGCTTGACCTCCC
GCTTCCCGAGTGAGACTTGTCTGTATGCAATGAAAGGTGACTTCGAACTA
AAAGACCTGGAAACTGGGCTGGCTCGCGCGGAGAAGTTCCAGTCAGAACA
GAAGAGAAGGAGCGCCTCATGAAGATGGTATTAGAGATAGGTTCCCCCTC
TGAGGCATGGCGAGCACTCACAAAAATAGCGGACGAGACCGAGAACGTCG
CATACGACAGGGCAAAAAGAGAATTTGAGACCCTGGAAATAGGAATGAAC
GAGACTGTAACCGAGTACTTCGCCCGCGTGAACATTGTCCTGATGAAACT
AGAGAGATACAATATAGTAACGCCCGAACGAGAGATCAAGCGCGTGGTAC
TGAGTAGCTTGACCTCCCGCTTCCCGAGTGAGACTTGTCTGTATGCAATG
AAAGGTGACTTCGAACTAAAAGACCTGGAAACTGGGCTGGCTCGCGCGGA
GAAGTTCCAGTCAGAACAGAAGAGAAGGAGCGCCTCCAGCCCAACCCCTG
GAGCAGCTGGGAAAGACCACCACGAACAGCGGCGAGGAAGAGGGCCTCAC
CAGCGGAGATCGCATCATCGCGGAGGAGATCAGTCGCATCAGCAGCGCGT
CATGTGTCCGCAGTGCGGAAAGGAGGAGCACTTCCCCGCAGACTGCCAGC
CCAACCCCTGGAGCAGCTGGGAAAGACCACCACGAACAGCGGCGAGGAAG
AGGGCCTCACCAGCGGAGATCGCATCATCGCGGAGGAGATCAGTCGCATC
AGCAGCGCGTCATGTGTCCGCAGTGCGGAAAGGAGGAGCACTTCCCCGCA
GACTGC
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