mRNA_D-herbacea_F_contig1064.650.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1064.650.1
Unique NamemRNA_D-herbacea_F_contig1064.650.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.080e-23
Identity = 53/81 (65.43%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGVFYVSYCTPGTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADPTV 243
            GLL  A SP+FH TGVFY SY   G SF  NRLSRF YD  SA  T  SEEILIT+SEK+S VHSAGW+GFKPS Y +  V
Sbjct:  137 GLLSMAFSPAFHTTGVFYASYVN-GPSFGTNRLSRFKYDPDSAANTLASEEILITSSEKKSNVHSAGWIGFKPSSYGNDAV 216
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.710e-21
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGVFYVSYCTPGTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYAD 234
            GLL  A SP+FH TGVFY SY   G SF  NRLSRF YD +SA  T  SEE+LI +SEK+S VHSAGW+GFKPS Y +
Sbjct:  224 GLLSMAFSPAFHTTGVFYASYVN-GPSFGTNRLSRFKYDPNSAENTLGSEEVLIISSEKQSNVHSAGWIGFKPSSYGN 300
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.930e-21
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGVFYVSYCTPGTSFAQN---RLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADP 237
            GLLGFA SPSF +TG+FYVSY   G    +N   RLS+FVY +    AT+ SEEIL+T++EK S+VHS+GWVGF PS YADP
Sbjct:  236 GLLGFAFSPSFTETGLFYVSYSVAGVMNPENGLNRLSKFVYYAGDVVATSGSEEILLTSTEKGSSVHSSGWVGFAPSSYADP 317
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.250e-11
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGV---FYVSYCT--PGTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADP 237
            GLL  A  P F D      FYVSY          +NRL+RF Y    A AT  SEE+L+TT  K ++VHSAGW+GFKPS Y  P
Sbjct:   86 GLLDVAFGPMFGDNSYPQYFYVSYTVLLDDGENQRNRLARFTYVPGDAAATRASEEVLLTTVPKYNSVHSAGWLGFKPSAYGSP 169
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.280e-11
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGV---FYVSYCT--PGTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADP 237
            GLL  A  P F D      FYVSY          +NRL++F Y      AT  SEE+L+TT  K +++HSAGW+GFKPSDY +P
Sbjct:  185 GLLDVAFGPMFGDNSYPQYFYVSYTVLLDDGEMQRNRLAKFTYFPEDPVATRASEEVLLTTVPKYNSIHSAGWLGFKPSDYGNP 268
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 5.370e-10
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGV---FYVSYCTPGTS--FAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADPTVR 246
            GLL  A  P F ++G    FYVSY          +NRL+RF Y       T  SEE+L+TT  K +++HSAGW+GFKPS Y + + +
Sbjct:  231 GLLDVAFGPMFSESGYPNYFYVSYTVDLNDDLMQRNRLARFTYIPGDPEGTKASEEVLLTTVPKYNSIHSAGWLGFKPSVYGNSSPQ 317
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-9
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDT---GVFYVSYCTP--GTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADPTVR 246
            GLL  A  P F ++     FYVSY          +NRL+RF Y       T  SEE+L+T++ K +++HSAGW+GFKPS Y + + +
Sbjct:  168 GLLDVAFGPMFSESDYPNYFYVSYTVDLNDGEVQRNRLARFTYIPGDPAGTKASEEVLLTSAPKSTSIHSAGWLGFKPSVYGNASPQ 254
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.590e-9
Identity = 38/86 (44.19%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGV---FYVSYCT--PGTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDYADPTV 243
            GLL  A  P F D      FYVSY          +NRL+RF Y      AT  +EE+L+TT  K ++VHSAGW+GFKPS Y    +
Sbjct:  206 GLLDLAFGPMFGDDSYPQYFYVSYTVLLDDGENQRNRLARFTYVPGDPVATRATEEVLLTTVPKYNSVHSAGWLGFKPSVYGSAEI 291
[Close]
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 8.680e-9
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    1 GLLGFALSPSFHDTGV---FYVSYCT--PGTSFAQNRLSRFVYDSSSAGATAESEEILITTSEKESTVHSAGWVGFKPSDY 228
            GLL     P F        FYVSY          +NRL+RF Y      AT  +EE+L+TT  K +++HSAGW+GFKPSDY
Sbjct:  125 GLLDVVFGPMFSVPSYPSYFYVSYTVLLDDGEMQRNRLARFTYVPGDPVATRATEEVLLTTVPKYNSIHSAGWLGFKPSDY 205
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1064.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KS07_9PHAE4.080e-2365.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJN8_ECTSI1.710e-2164.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP1_ECTSI5.930e-2160.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G960_ECTSI1.250e-1148.81Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G957_ECTSI1.280e-1146.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4P3_ECTSI5.370e-1042.53Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE1.340e-940.23GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G961_ECTSI2.590e-944.19Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5KT40_9PHAE8.680e-944.44GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1064contigD-herbacea_F_contig1064:38370..39824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog2880.D7FJN8
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size254
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.8158042-CDS-D-herbacea_F_contig1064:38369..384501622927474.8158042-CDS-D-herbacea_F_contig1064:38369..38450Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1064 38370..38450 +
1690790190.8551342-CDS-D-herbacea_F_contig1064:38369..384501690790190.8551342-CDS-D-herbacea_F_contig1064:38369..38450Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1064 38370..38450 +
1622927474.8262815-CDS-D-herbacea_F_contig1064:39653..398241622927474.8262815-CDS-D-herbacea_F_contig1064:39653..39824Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1064 39654..39824 +
1690790190.8677132-CDS-D-herbacea_F_contig1064:39653..398241690790190.8677132-CDS-D-herbacea_F_contig1064:39653..39824Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1064 39654..39824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1064.650.1prot_D-herbacea_F_contig1064.650.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1064 38370..39824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1064.650.1

>prot_D-herbacea_F_contig1064.650.1 ID=prot_D-herbacea_F_contig1064.650.1|Name=mRNA_D-herbacea_F_contig1064.650.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=84bp
GLLGFALSPSFHDTGVFYVSYCTPGTSFAQNRLSRFVYDSSSAGATAESE
EILITTSEKESTVHSAGWVGFKPSDYADPTVRL*
back to top

mRNA from alignment at D-herbacea_F_contig1064:38370..39824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1064.650.1 ID=mRNA_D-herbacea_F_contig1064.650.1|Name=mRNA_D-herbacea_F_contig1064.650.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1455bp|location=Sequence derived from alignment at D-herbacea_F_contig1064:38370..39824+ (Desmarestia herbacea DmunF female)
GGACTCCTGGGCTTCGCGCTGAGTCCCTCCTTCCATGACACCGGCGTGTT
CTACGTGAGCTATTGCACTCCTGGGACATCTGTGAGTGCAACCAATAGAT
ATCACGTGCACATGGGGTGGGTGTGGGTGAAGAAAGGGCGTTGCATTTTG
AGTCTTGTGTACCCTTCGCTTCTAACTTGTCCAGCTCAGCTCACTTGAGG
TCATCGCTCAGTGCGATTTTCCGAGCAAGCTGTGGCCACAGGTGTCTACC
CCCCCGCCCCCCCCATAAGTGCCTCGGATTTTTATCGCGCACATGGTTAA
GCGTTCCCAAAGCTCGTCAAGGTTTTTCGAGTTGTCGTTACTCGGATTTT
CGTGCTTTCCGCGACTCCGGAAGGCGAGGCATAAAAATGCCACATTTAGT
TTATATCGGGATTCGAACCCCAGACATTCGCCAACAAGGGTGACGCGTAC
AACTATCATACTATACGATTGTGATTACAAACTTCGTTTTTACGCTGGCA
AAACTTTTCCGACCATGAACAGTTTTTTTTTTCAGTTTATGTTATATTGA
CGGTGGTGGCGATGAACGCGTATGTTCAACTAAATACATGTTCGGGTCCA
TACAGTACACAATCTGAGAGCGCCGTTGTTGAGGGTCTCCCCAATCAGCT
TGATTGGATTGTCGGAAGGCGCTCAATCCGAAACACTTGTAACCGTACCC
CGTCAGGATTACATTATAGGAGGATTATACCCCAGGCGTACCATTAATTG
TCGAAGTTGAGGGCGACGCGGAGATGTGCAAGCGTACGCGCGGAGGTCGA
AATCCACCGTGGGTCTTTGAGCACCGCTGTGGCCGCCCATTGACAAACAT
ATATGGCTAACCAGGACGCCAAGCAAGTGTTAAAAGCATGGAGATTTTTA
TTTGACCATTTAAGGTATTTTCGAGCAAAGCAAAGCAGGTGACGACTGTG
ATATAATAGCAACCCGGTGTCATATCATCCTTGCATTCTTGCTGAAGTAC
GCAGATTGGCGGGCCAACAACAAACCAACAATTTTTTCCTCCGTCTCGAC
GTTGTTGGGATGCGACCAGGGTCAATGGGCAACCACTTTGGCATGAGTTT
TTTCGACACACCCCTCCGCGTTGTCGATTGTATTTTCGCTTACGGGGGGG
GGGAGGGGCGTAAGTTACCCCCCCCCTCTTGCTCCGTCTCGAGAGGCATG
CGTGGTCAATGGTCATATGGCCAAGGCAAGCAACAAATGAGTATCCCCTC
CCGCCTCCCGCCTATCTGTCTTTTTTTCTTGCAGTTCGCACAAAACCGAC
TGTCGAGGTTTGTGTATGACTCTTCCAGCGCGGGGGCAACTGCCGAATCG
GAGGAAATTCTCATCACGACCAGCGAGAAGGAATCCACCGTTCACTCCGC
CGGCTGGGTCGGGTTCAAGCCCTCTGACTACGCGGATCCGACGGTAAGGT
TATAA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1064:38370..39824+

>mRNA_D-herbacea_F_contig1064.650.1 ID=mRNA_D-herbacea_F_contig1064.650.1|Name=mRNA_D-herbacea_F_contig1064.650.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=504bp|location=Sequence derived from alignment at D-herbacea_F_contig1064:38370..39824+ (Desmarestia herbacea DmunF female)
GGACTCCTGGGCTTCGCGCTGAGTCCCTCCTTCCATGACACCGGCGTGTT
CTACGTGAGCTATTGCACTCCTGGGACATCTGGACTCCTGGGCTTCGCGC
TGAGTCCCTCCTTCCATGACACCGGCGTGTTCTACGTGAGCTATTGCACT
CCTGGGACATCTTTCGCACAAAACCGACTGTCGAGGTTTGTGTATGACTC
TTCCAGCGCGGGGGCAACTGCCGAATCGGAGGAAATTCTCATCACGACCA
GCGAGAAGGAATCCACCGTTCACTCCGCCGGCTGGGTCGGGTTCAAGCCC
TCTGACTACGCGGATCCGACGGTAAGGTTATAATTCGCACAAAACCGACT
GTCGAGGTTTGTGTATGACTCTTCCAGCGCGGGGGCAACTGCCGAATCGG
AGGAAATTCTCATCACGACCAGCGAGAAGGAATCCACCGTTCACTCCGCC
GGCTGGGTCGGGTTCAAGCCCTCTGACTACGCGGATCCGACGGTAAGGTT
ATAA
back to top